Non-Coding RNA Search

Ss1.1-Liv1-LVR010042B07.5

Sequence:


               
               AGAGGCGGGTCCTGCACCTCAGGGCGGCGGCGGCGGCGGCGGCAGAGACGGTGGCGGCGG
GGCCGGGGTCTCCTGGGCCCTTTCTCCCTTCCCCACGGACCCCTTGGACTCACTTCCAGG
TCACACCCAGGCTGCTTAGCTTTGGGGATATTTTAATTTTAACGCTCTACAACCACCCCC
ACCCCCGGTCTTTTCCCAGTTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGTGTATG
TTTTTTGTTGTTTGTGTTTTTCGGGAGAAGGTAGTGGCAGCTGCCAGTCAGTGATGGGCA
ATCTAGCAACTACTCTGTGTCGTGCCTCGGATTGACACCGGGCCTTTGTCATGGAAGCGG
GCAGTGTGGACAGCAAGGGGAATGCTACACCAGCCCTTGGTGCGCTCTCCGCAGGGGTTA
ACGGGCGTTTTAGGCCGCAAGGCCTTTCGATGAGCTGGGGGCGGGGTGATGGTGGTGGTG
GTGCGGAGAAGCCCAGGCTTAGGAGCCGTTGCAGGTGCAAAAGGAAATCTCAGCAATTTT
GCTGCTGGATTTGGGAGCAGAAGGAAACAAAATATACTAGGTGGATGGGAACTTTCCACC
GACCTCACTTGGTTTCAAGTGTGCCCAGTGGTGGGAATACTGGCAGGATCGGTTCATCGT
GGCCAGTCAGTGCTGACACTGCTCGCCCTCCACTTTGTGGAGTGACATTTTGACGTGTAG
GTAGCATGTGTTGTCACGAAATTCTTACTGTCGCAAGGAGGACTCTCTGGGGACAGTGCG
GAGAGGATGGCCTGTCTTTTGGCTATAAACGGAATGCAAGGAATCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGCGGGTCCTGCACCTCAGGGCGGCGGCGGCGGCGGCGGCAGAGACGGTGGCGGCGG
GGCCGGGGTCTCCTGGGCCCTTTCTCCCTTCCCCACGGACCCCTTGGACTCACTTCCAGG
TCACACCCAGGCTGCTTAGCTTTGGGGATATTTTAATTTTAACGCTCTACAACCACCCCC
ACCCCCGGTCTTTTCCCAGTTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGTGTATG
TTTTTTGTTGTTTGTGTTTTTCGGGAGAAGGTAGTGGCAGCTGCCAGTCAGTGATGGGCA
ATCTAGCAACTACTCTGTGTCGTGCCTCGGATTGACACCGGGCCTTTGTCATGGAAGCGG
GCAGTGTGGACAGCAAGGGGAATGCTACACCAGCCCTTGGTGCGCTCTCCGCAGGGGTTA
ACGGGCGTTTTAGGCCGCAAGGCCTTTCGATGAGCTGGGGGCGGGGTGATGGTGGTGGTG
GTGCGGAGAAGCCCAGGCTTAGGAGCCGTTGCAGGTGCAAAAGGAAATCTCAGCAATTTT
GCTGCTGGATTTGGGAGCAGAAGGAAACAAAATATACTAGGTGGATGGGAACTTTCCACC
GACCTCACTTGGTTTCAAGTGTGCCCAGTGGTGGGAATACTGGCAGGATCGGTTCATCGT
GGCCAGTCAGTGCTGACACTGCTCGCCCTCCACTTTGTGGAGTGACATTTTGACGTGTAG
GTAGCATGTGTTGTCACGAAATTCTTACTGTCGCAAGGAGGACTCTCTGGGGACAGTGCG
GAGAGGATGGCCTGTCTTTTGGCTATAAACGGAATGCAAGGAATCTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               396-490, - strand, RNAz p=0.596138

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               396-490, - strand, RNAz p=0.596138

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               62-828, gnl|bosTau2|chr17 (37159589-37158852)
               

               
               62-828, gnl|canFam2|chr26 (12969853-12970459)
               

               
               62-828, gnl|dasNov1|scaffold_201973 (3925-3301)
               

               
               62-828, gnl|echTel1|scaffold_234515 (622-1205)
               

               
               62-828, gnl|galGal2|chr15 (6325648-6326162)
               

               
               62-828, gnl|hg17|chr12 (111281343-111281967)
               

               
               62-828, gnl|Hg17|chr12 (111282164-111281439)
               

               
               62-828, gnl|mm7|chr5 (120455669-120454994)
               

               
               62-828, gnl|Mm7|chr5 (120454736-120455573)
               

               
               62-828, gnl|monDom2|scaffold_110 (483300-483981)
               

               
               62-828, gnl|oryCun1|scaffold_172449 (4468-3858)
               

               
               62-828, gnl|panTro1|chr10 (113980945-113981568)
               

               
               62-828, gnl|rheMac2|chr11 (113306569-113307191)
               

               
               62-828, gnl|rn3|chr12 (36329409-36330005)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               62-828, gnl|bosTau2|chr17 (37159589-37158852)
               

               
               62-828, gnl|canFam2|chr26 (12969853-12970459)
               

               
               62-828, gnl|dasNov1|scaffold_201973 (3925-3301)
               

               
               62-828, gnl|echTel1|scaffold_234515 (622-1205)
               

               
               62-828, gnl|galGal2|chr15 (6325648-6326162)
               

               
               62-828, gnl|hg17|chr12 (111281343-111281967)
               

               
               62-828, gnl|Hg17|chr12 (111282164-111281439)
               

               
               62-828, gnl|mm7|chr5 (120455669-120454994)
               

               
               62-828, gnl|Mm7|chr5 (120454736-120455573)
               

               
               62-828, gnl|monDom2|scaffold_110 (483300-483981)
               

               
               62-828, gnl|oryCun1|scaffold_172449 (4468-3858)
               

               
               62-828, gnl|panTro1|chr10 (113980945-113981568)
               

               
               62-828, gnl|rheMac2|chr11 (113306569-113307191)
               

               
               62-828, gnl|rn3|chr12 (36329409-36330005)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	62-828, gnl\|bosTau2\|chr17 (37159589-37158852)
	62-828, gnl\|canFam2\|chr26 (12969853-12970459)
	62-828, gnl\|dasNov1\|scaffold_201973 (3925-3301)
	62-828, gnl\|echTel1\|scaffold_234515 (622-1205)
	62-828, gnl\|galGal2\|chr15 (6325648-6326162)
	62-828, gnl\|hg17\|chr12 (111281343-111281967)
	62-828, gnl\|Hg17\|chr12 (111282164-111281439)
	62-828, gnl\|mm7\|chr5 (120455669-120454994)
	62-828, gnl\|Mm7\|chr5 (120454736-120455573)
	62-828, gnl\|monDom2\|scaffold_110 (483300-483981)
	62-828, gnl\|oryCun1\|scaffold_172449 (4468-3858)
	62-828, gnl\|panTro1\|chr10 (113980945-113981568)
	62-828, gnl\|rheMac2\|chr11 (113306569-113307191)
	62-828, gnl\|rn3\|chr12 (36329409-36330005)