Ss1.1-Liv1-LVR010042E11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCTGCTGTCTAGACTGCAGCGGTGATGGCGGGCAGACAGTTTGGCTGGAGGCAGCCGG CTCTACTCCAGCTCCTTCTTGGTGTGAACCTGATGGTGATGCCACCTATCCAGGCCCGGA GTCTGCGCTTCGTTACCTTGCTGTACCGACATGGAGACCGCTCGCCAGTAAAGACATATC CCAAGGACCCCTATCAAGAAGACAAATGGCCCCAGGGCTTTGGTCAGCTAACCAAGGAGG GGATGCTACAGCACTGGGAGCTGGGCCGGGCTCTGCGACAGCGATACCTTGGCTTTCTGA ACACCTCCTACCACCGGCAAGAGGTTTATGTTCGAAGCACAGACTTTGACCGGACTCTCA TGAGTGCTGAGGCCAACTTGGCTGGACTCTTCCCCCCTAATGGGATGCAGCGCTTTAATC CAAACATCTCTTGGCAGCCTATTCCTGTCCATACTGTGCCTGTTACCGAGGACAGACTGC TGAAGTTCCCGTTGGGCCCATGTCCCCGTTTTGAGCAGCTGCAGAACGAGACCCGGCGGA CACCAGAGTATCAGAATGAGAGTATTCAGAATGCACAATTTCTGGAAATGGTGGCCAACG AGACAGGGCTTACGGACCTGACACTGGAGACCGTCTGGAATGTCTATGACACACTCTTCT GTGAGCAGACACACGGGCTGGTCCTGCCTCCCTGGGCCTCACCCCAAACCATGCAGCGTC TGAGCCGGCTAAAGGACTTCAGCTTCCGCTTCCTCTTCGGGATCTACGAGCAGGCAGAGA AGGCCCGGCTGCAGGGGGGAGTCCTGCTGGCCCAGATACGGAAGAACCTGACCCTGATGG CAACCACCTCCCAGCTCCCCAAGCTGCTGGTCTACTCAGCGCATGACACCACCCTGGTTG CCCTGCAAATGGCACTGGATGTCTACAACGGTGAACAAGCTCCCTATGCGGCCTGCCACA TATTTGAACTGTACCAGGAAGATAATGGGAATTTCTCAGTGGAGATGTACTTTCGGAATG AGAGTGACAAGGCCCCCTGGCCGCTGATCCTGCCCGGCTGCCCTCACCGCTGCCCGCTGC AGGACTTCCTTCGCCTCACCGAGCCTGTCATACCCAAGGATTGGCAGCAGGAGTGCCAGC TGGCAAGTGGTCCTGCAGACACAGAGGTGATCGTGGCCTTGGCTGTGTGTGGCTCCATCC TCTTCCTTCTCATAGTGCTGCTCCTCACCGTCCTCTTCCGGATGCAGGCCCAGCCTCCCG GGTACCGCCACGTCGCAGATGGGGAAGATCATGCCTGACAACCACTCAGCCCCCTCCCCT CCGCCTCCTAGGAGAGGTGGGCTGGGCCCTTGTTCCTCACCATTGCTGCTCCCCAGCCCA TGCACAGGAGACCCTGGGTTGGGCCTCCCTCTGATTTCCCCAGCCTAGATGAACAATTGG GGCTCAGCTTGGCCCATGGCACCTGTCACTCAGCATTCATGTGCCTGATGTTTACCAAGT ACCGTGTTGGACATCAGCTCTCTCCAAACAGGATTTGCCTCCTCCGTGCTCCTTTCTAAG GGCCTGAAATGTGGGCAAGTATTCAAGTTTCACTCAGGACCTGGGATAAAGACTGAAGGA GCTGGTGCTTGATCTGCTTCACCTCTCCACCAAGCCCTGCTCACTCATCTCCCACCCAGA ATCTTTGGCCAGTGGCCCAGAGGACACAATTTTGCCCCTCAGTGTTTGTTTTAGTGGGAA AAACTGCATGGTATTGGGGGTACAAACATTGGCCATCAAGGGACCAGGTCACCCAGGCAT CAGCCGGCCAAGTTTTCCTTTGTCCAGCTGAAGCCACAATTAGGGCAGACATAATGCTTC CAGCATCTTTGTCACCCCTGCACCCTGAGCAGTTTGGATGTCTGGACTTGGGAGAGATGG GGGAAAGCGGGGAGCACAATGAATTGTGGTACAGAATCATGGAATTACTATCCCTCTCAG CTGGGCTAGGACCTCCAGGGACCCAGGGTAAATGCACGCTGTGAGCTGAACAGCTCTTGA CTGTGGCCCAGAATAGGGCTGAGACAGCTTCCAGAGAATGAAGGTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCTGCTGTCTAGACTGCAGCGGTGATGGCGGGCAGACAGTTTGGCTGGAGGCAGCCGG CTCTACTCCAGCTCCTTCTTGGTGTGAACCTGATGGTGATGCCACCTATCCAGGCCCGGA GTCTGCGCTTCGTTACCTTGCTGTACCGACATGGAGACCGCTCGCCAGTAAAGACATATC CCAAGGACCCCTATCAAGAAGACAAATGGCCCCAGGGCTTTGGTCAGCTAACCAAGGAGG GGATGCTACAGCACTGGGAGCTGGGCCGGGCTCTGCGACAGCGATACCTTGGCTTTCTGA ACACCTCCTACCACCGGCAAGAGGTTTATGTTCGAAGCACAGACTTTGACCGGACTCTCA TGAGTGCTGAGGCCAACTTGGCTGGACTCTTCCCCCCTAATGGGATGCAGCGCTTTAATC CAAACATCTCTTGGCAGCCTATTCCTGTCCATACTGTGCCTGTTACCGAGGACAGACTGC TGAAGTTCCCGTTGGGCCCATGTCCCCGTTTTGAGCAGCTGCAGAACGAGACCCGGCGGA CACCAGAGTATCAGAATGAGAGTATTCAGAATGCACAATTTCTGGAAATGGTGGCCAACG AGACAGGGCTTACGGACCTGACACTGGAGACCGTCTGGAATGTCTATGACACACTCTTCT GTGAGCAGACACACGGGCTGGTCCTGCCTCCCTGGGCCTCACCCCAAACCATGCAGCGTC TGAGCCGGCTAAAGGACTTCAGCTTCCGCTTCCTCTTCGGGATCTACGAGCAGGCAGAGA AGGCCCGGCTGCAGGGGGGAGTCCTGCTGGCCCAGATACGGAAGAACCTGACCCTGATGG CAACCACCTCCCAGCTCCCCAAGCTGCTGGTCTACTCAGCGCATGACACCACCCTGGTTG CCCTGCAAATGGCACTGGATGTCTACAACGGTGAACAAGCTCCCTATGCGGCCTGCCACA TATTTGAACTGTACCAGGAAGATAATGGGAATTTCTCAGTGGAGATGTACTTTCGGAATG AGAGTGACAAGGCCCCCTGGCCGCTGATCCTGCCCGGCTGCCCTCACCGCTGCCCGCTGC AGGACTTCCTTCGCCTCACCGAGCCTGTCATACCCAAGGATTGGCAGCAGGAGTGCCAGC TGGCAAGTGGTCCTGCAGACACAGAGGTGATCGTGGCCTTGGCTGTGTGTGGCTCCATCC TCTTCCTTCTCATAGTGCTGCTCCTCACCGTCCTCTTCCGGATGCAGGCCCAGCCTCCCG GGTACCGCCACGTCGCAGATGGGGAAGATCATGCCTGACAACCACTCAGCCCCCTCCCCT CCGCCTCCTAGGAGAGGTGGGCTGGGCCCTTGTTCCTCACCATTGCTGCTCCCCAGCCCA TGCACAGGAGACCCTGGGTTGGGCCTCCCTCTGATTTCCCCAGCCTAGATGAACAATTGG GGCTCAGCTTGGCCCATGGCACCTGTCACTCAGCATTCATGTGCCTGATGTTTACCAAGT ACCGTGTTGGACATCAGCTCTCTCCAAACAGGATTTGCCTCCTCCGTGCTCCTTTCTAAG GGCCTGAAATGTGGGCAAGTATTCAAGTTTCACTCAGGACCTGGGATAAAGACTGAAGGA GCTGGTGCTTGATCTGCTTCACCTCTCCACCAAGCCCTGCTCACTCATCTCCCACCCAGA ATCTTTGGCCAGTGGCCCAGAGGACACAATTTTGCCCCTCAGTGTTTGTTTTAGTGGGAA AAACTGCATGGTATTGGGGGTACAAACATTGGCCATCAAGGGACCAGGTCACCCAGGCAT CAGCCGGCCAAGTTTTCCTTTGTCCAGCTGAAGCCACAATTAGGGCAGACATAATGCTTC CAGCATCTTTGTCACCCCTGCACCCTGAGCAGTTTGGATGTCTGGACTTGGGAGAGATGG GGGAAAGCGGGGAGCACAATGAATTGTGGTACAGAATCATGGAATTACTATCCCTCTCAG CTGGGCTAGGACCTCCAGGGACCCAGGGTAAATGCACGCTGTGAGCTGAACAGCTCTTGA CTGTGGCCCAGAATAGGGCTGAGACAGCTTCCAGAGAATGAAGGTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 881-976, + strand, RNAz p=0.7703 | |
| 1202-1481, - strand, RNAz p=0.990864 | |
| 1986-2087, - strand, RNAz p=0.999821 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 881-976, + strand, RNAz p=0.7703 | |
| 1202-1481, - strand, RNAz p=0.990864 | |
| 1986-2087, - strand, RNAz p=0.999821 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 5-140, gnl|bosTau2|chr15 (49049772-49049907) | |
| 5-140, gnl|canFam2|chr18 (45380679-45380289) | |
| 5-140, gnl|dasNov1|scaffold_3175 (7703-8084) | |
| 5-140, gnl|echTel1|scaffold_319090 (2859-3160) | |
| 5-140, gnl|hg17|chr11 (47226766-47227158) | |
| 5-140, gnl|Hg17|chr11 (47226938-47226803) | |
| 5-140, gnl|loxAfr1|scaffold_19545 (52783-53189) | |
| 5-140, gnl|mm7|chr2 (91053803-91053397) | |
| 5-140, gnl|Mm7|chr2 (91053629-91053764) | |
| 5-140, gnl|monDom2|scaffold_33 (13121502-13121898) | |
| 5-140, gnl|oryCun1|scaffold_208209 (41439-41052) | |
| 5-140, gnl|panTro1|chr9 (47743333-47743725) | |
| 5-140, gnl|rheMac2|chr14 (24870145-24869753) | |
| 5-140, gnl|rn3|chr3 (75456051-75455646) | |
| 322-475, gnl|bosTau2|chr15 (49051874-49052027) | |
| 322-475, gnl|Hg17|chr11 (47223963-47223810) | |
| 322-475, gnl|Mm7|chr2 (91056470-91056623) | |
| 664-799, gnl|bosTau2|chr15 (49052844-49052979) | |
| 664-799, gnl|Hg17|chr11 (47222996-47222861) | |
| 664-799, gnl|Mm7|chr2 (91057431-91057566) | |
| 881-989, gnl|bosTau2|chr15 (49053966-49054074) | |
| 881-989, gnl|canFam2|chr18 (45385003-45384875) | |
| 881-989, gnl|danRer3|chr7 (34815120-34815250) | |
| 881-989, gnl|dasNov1|scaffold_36230 (4592-4714) | |
| 881-989, gnl|echTel1|scaffold_264008 (1929-1826) | |
| 881-989, gnl|fr1|chrUn (128081215-128081081) | |
| 881-989, gnl|galGal2|chr5 (20440984-20440860) | |
| 881-989, gnl|hg17|chr11 (47221141-47221271) | |
| 881-989, gnl|Hg17|chr11 (47221252-47221144) | |
| 881-989, gnl|loxAfr1|scaffold_7790 (29872-29987) | |
| 881-989, gnl|mm7|chr2 (91058868-91058738) | |
| 881-989, gnl|Mm7|chr2 (91058755-91058863) | |
| 881-989, gnl|monDom2|scaffold_33 (13117874-13118016) | |
| 881-989, gnl|oryCun1|scaffold_208209 (45697-45567) | |
| 881-989, gnl|panTro1|chr9 (47737700-47737830) | |
| 881-989, gnl|rheMac2|chr14 (24875838-24875708) | |
| 881-989, gnl|rn3|chr3 (75461332-75461202) | |
| 881-989, gnl|tetNig1|chr3 (3797622-3797740) | |
| 881-989, gnl|xenTro1|scaffold_922 (244472-244349) | |
| 1163-2087, gnl|bosTau2|chr15 (49056107-49057021) | |
| 1163-2087, gnl|Hg17|chr11 (47218378-47217439) | |
| 1163-2087, gnl|Mm7|chr2 (91061321-91062181) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-140, gnl|bosTau2|chr15 (49049772-49049907) | |
| 5-140, gnl|canFam2|chr18 (45380679-45380289) | |
| 5-140, gnl|dasNov1|scaffold_3175 (7703-8084) | |
| 5-140, gnl|echTel1|scaffold_319090 (2859-3160) | |
| 5-140, gnl|hg17|chr11 (47226766-47227158) | |
| 5-140, gnl|Hg17|chr11 (47226938-47226803) | |
| 5-140, gnl|loxAfr1|scaffold_19545 (52783-53189) | |
| 5-140, gnl|mm7|chr2 (91053803-91053397) | |
| 5-140, gnl|Mm7|chr2 (91053629-91053764) | |
| 5-140, gnl|monDom2|scaffold_33 (13121502-13121898) | |
| 5-140, gnl|oryCun1|scaffold_208209 (41439-41052) | |
| 5-140, gnl|panTro1|chr9 (47743333-47743725) | |
| 5-140, gnl|rheMac2|chr14 (24870145-24869753) | |
| 5-140, gnl|rn3|chr3 (75456051-75455646) | |
| 322-475, gnl|bosTau2|chr15 (49051874-49052027) | |
| 322-475, gnl|Hg17|chr11 (47223963-47223810) | |
| 322-475, gnl|Mm7|chr2 (91056470-91056623) | |
| 664-799, gnl|bosTau2|chr15 (49052844-49052979) | |
| 664-799, gnl|Hg17|chr11 (47222996-47222861) | |
| 664-799, gnl|Mm7|chr2 (91057431-91057566) | |
| 881-989, gnl|bosTau2|chr15 (49053966-49054074) | |
| 881-989, gnl|canFam2|chr18 (45385003-45384875) | |
| 881-989, gnl|danRer3|chr7 (34815120-34815250) | |
| 881-989, gnl|dasNov1|scaffold_36230 (4592-4714) | |
| 881-989, gnl|echTel1|scaffold_264008 (1929-1826) | |
| 881-989, gnl|fr1|chrUn (128081215-128081081) | |
| 881-989, gnl|galGal2|chr5 (20440984-20440860) | |
| 881-989, gnl|hg17|chr11 (47221141-47221271) | |
| 881-989, gnl|Hg17|chr11 (47221252-47221144) | |
| 881-989, gnl|loxAfr1|scaffold_7790 (29872-29987) | |
| 881-989, gnl|mm7|chr2 (91058868-91058738) | |
| 881-989, gnl|Mm7|chr2 (91058755-91058863) | |
| 881-989, gnl|monDom2|scaffold_33 (13117874-13118016) | |
| 881-989, gnl|oryCun1|scaffold_208209 (45697-45567) | |
| 881-989, gnl|panTro1|chr9 (47737700-47737830) | |
| 881-989, gnl|rheMac2|chr14 (24875838-24875708) | |
| 881-989, gnl|rn3|chr3 (75461332-75461202) | |
| 881-989, gnl|tetNig1|chr3 (3797622-3797740) | |
| 881-989, gnl|xenTro1|scaffold_922 (244472-244349) | |
| 1163-2087, gnl|bosTau2|chr15 (49056107-49057021) | |
| 1163-2087, gnl|Hg17|chr11 (47218378-47217439) | |
| 1163-2087, gnl|Mm7|chr2 (91061321-91062181) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| clu (0.837521) | |
| sme (0.305437) | |
| jej (0.296765) | |
| cga (0.279096) | |
| tes (0.207814) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| ctl (0.153069) | |
| cli (0.152812) | |
| cly (0.120642) | |
| eru (0.120048) | |
| med (0.116252) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.837521) | |
| sme (0.305437) | |
| jej (0.296765) | |
| cga (0.279096) | |
| tes (0.207814) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| ctl (0.153069) | |
| cli (0.152812) | |
| cly (0.120642) | |
| eru (0.120048) | |
| med (0.116252) | |
| cty (0.10408) | |
| nbm (0.0993246) |