Non-Coding RNA Search

Ss1.1-Liv1-LVR010042F08.5

Sequence:


               
               CAGTCCCCCAAGGGAAGCACTGCTCTCTCGGAGCCAGGCCACCATGGACGCCCTGGTCCG
ACTCCTGCAGCTGCTGGTGCTGCTCCTGACCCTGCCCCTGCACCTCATGGCTCTGCTGGG
CCTCTGGGAGCCCCTGTGCAAGAGCTATTTCCCCTACGTGATGGATGTGCTGACGGCCAA
GAACAACCGCAAGATAGAGAGCAAGAAGCGGGAGCTCTTCAGCCAGATAAAGGGGCTGGC
CGGAGCCTCGGGAAAGGTGGCCCTGCTGGAGCTGGGCTCCGGCACTGGCGCCAACTTCCA
GTTCTACCCAGCAGGCTGCCGGATCACCTGCCTGGACCCGAACCCCCACTTTCAGACGTT
CCTGACAAAGAGTATGGCCGAGAATAGACATCTTGAATACGAACGGTTCGTGGTGGCTTT
TGGAGAGGACATGAAAGAGCTGGCCGATGACTCCATGGATGTGGTGGTCAGCACCTTGGT
ACTGTGCTCAGTGCAGAGCCCGAAGAGGGTCCTGCAGGAGGTTCAGAGAGTGCTGAGGCC
GGGAGGACTGTTCTTCTTCTGGGAGCACATGGCTGAGCCACAGGGAAGCTGGGCCCTCCT
GTGGCAGCAGGTGTTAGAGCCCACCTGGAAACATATTGCGGATGGCTGCTGCCTCACCAG
AGAGACCCGGAAAGACCTGGAAAGTGCCAAGTTCTCTGAACTCCAAATGGAACAGCATCC
CCCTCTCTTGAAGTGGTTACCTGTGGGGCCCCATATCATGGGAAAGGCAGTGAAATAAGC
CCCACCCACCTACCAAGTCTCCCAGCTACTGAGAGGGATCCAGGCAGAGAAAAGCCATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTCCCCCAAGGGAAGCACTGCTCTCTCGGAGCCAGGCCACCATGGACGCCCTGGTCCG
ACTCCTGCAGCTGCTGGTGCTGCTCCTGACCCTGCCCCTGCACCTCATGGCTCTGCTGGG
CCTCTGGGAGCCCCTGTGCAAGAGCTATTTCCCCTACGTGATGGATGTGCTGACGGCCAA
GAACAACCGCAAGATAGAGAGCAAGAAGCGGGAGCTCTTCAGCCAGATAAAGGGGCTGGC
CGGAGCCTCGGGAAAGGTGGCCCTGCTGGAGCTGGGCTCCGGCACTGGCGCCAACTTCCA
GTTCTACCCAGCAGGCTGCCGGATCACCTGCCTGGACCCGAACCCCCACTTTCAGACGTT
CCTGACAAAGAGTATGGCCGAGAATAGACATCTTGAATACGAACGGTTCGTGGTGGCTTT
TGGAGAGGACATGAAAGAGCTGGCCGATGACTCCATGGATGTGGTGGTCAGCACCTTGGT
ACTGTGCTCAGTGCAGAGCCCGAAGAGGGTCCTGCAGGAGGTTCAGAGAGTGCTGAGGCC
GGGAGGACTGTTCTTCTTCTGGGAGCACATGGCTGAGCCACAGGGAAGCTGGGCCCTCCT
GTGGCAGCAGGTGTTAGAGCCCACCTGGAAACATATTGCGGATGGCTGCTGCCTCACCAG
AGAGACCCGGAAAGACCTGGAAAGTGCCAAGTTCTCTGAACTCCAAATGGAACAGCATCC
CCCTCTCTTGAAGTGGTTACCTGTGGGGCCCCATATCATGGGAAAGGCAGTGAAATAAGC
CCCACCCACCTACCAAGTCTCCCAGCTACTGAGAGGGATCCAGGCAGAGAAAAGCCATCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37182139|gb|AAQ88872.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37182139|gb|AAQ88872.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-319, + strand, RNAz p=0.513765

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-319, + strand, RNAz p=0.513765

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-542, gnl|bosTau2|chr5 (35343394-35343931)
               

               
               1-542, gnl|Hg17|chr12 (54361767-54362304)
               

               
               1-542, gnl|Mm7|chr10 (128462743-128462208)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-542, gnl|bosTau2|chr5 (35343394-35343931)
               

               
               1-542, gnl|Hg17|chr12 (54361767-54362304)
               

               
               1-542, gnl|Mm7|chr10 (128462743-128462208)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cli (3.20905)
               

               
               lun (0.150489)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (3.20905)
               

               
               lun (0.150489)

	1-542, gnl\|bosTau2\|chr5 (35343394-35343931)
	1-542, gnl\|Hg17\|chr12 (54361767-54362304)
	1-542, gnl\|Mm7\|chr10 (128462743-128462208)