Ss1.1-Liv1-LVR010042G08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGAATTATAATTTTAAAGATTGTCCATAGAAGAATAATTAACAGGTTCCACTCCTTTCT GCTCTTTATGGGTCATCCACCTTATGCGATTCGGGAAGTGAACATAAACAAGTTCTGCAG GATCATCAGTGAGTTTGCCCTGGAGTATCGCACCACCAGGGAGAGGGTTTTGCAGCAGAA ACAGAAACGAGCCAACCACAGAGAGAGAAACAAGACCCGAGGGAAGATGATCACTGATTC TGGCAAGTTCTCTGGCAGTTCCCCGGCACCTTCGAGCCAGCCACAGGGCCTGAGCTACGC GGAGGACGCTGCAGAGCACGAGAACATGAAGGCTGTGCTGAAAACCTCGTCCCCTGCCGT GGAGGATGCCACCCCCGTGCTGGGCGTCCGCACCCGCAGCCGAGCGAGCCGAGGATCCAC TAGTTCATGGACTATGGGAATGGATGACTCGCCTAATGTCACAGATGATGCAGCTGATGA GATCATGGACCGCATCGTCAAGTCAGCCACCCAAGTGCCCAGTCAGCGAGTGGTGCCGCG GGAGAGGAAGCGCTCCCGGGCCAACCGGAAGTCCCTTCGAAGGACCCTGAAGAGTGGCTT GACTCCGGAAGAGGCCAGGGCCCTGGGCCTGGTGGGCACCTCGGAGTTGCAGCTGTGACC CCTATGGTGCCTGTGTACCTGCACAGGGCATGAGCTCCTGCTGGAAGGAACCCCTGCAGT GGGAGGTGAGGAGACTCTTAACACCCAAAGGTTCTGAAAGGGGCACCCATGTCTAGGTGT CACTGGCATGGCTTGTGTCACCAGCGGTGCACTGACATGGATCTCGGAGTCTCCTTCACG TACTTTCTTCATCGTGTCAGCTGTGTTTCTCTTGTTTCCTTGACACTTGGTTTAGTAGTT CCGAAGTGTGACACCTTTTCTGTGCAAGGAACAGCCCTTTTAAGGAGCCAATCACTTCTG TCACAATTACTATGGTTATGAGGCAGTCTGATTAGGTTCACAGACTGGGTCTCTCCACAA CACCAAAATATCCAGATGTAAACTCCAAAGTTGTACACAAAAGAAAGCACAGGTTGTTTA TCAGTTGTGGATTTTAGATGTACTAAATGTTTATACAAATTCATAAATGTACACCATGTT TCAAATATTAAATAAATAGAGTTTAATGCCATAACTGGAAAGTTTTTTTTCTCCTGGGTG TAGGATCTTAAACAACCCCACGGGCTCTCCTCCTTCTGCATCAGCAAAACCTCTTCTCAG AGGTATATCAGAAGGACCCTGGCTCGGAACGGCTTCCAGGCCTTTGGGGTTTCTGTTTTG GTTAATGGAGCGAGAAGAACGGACCATGTGCTCTTTGTAATTCCCAGTTAAGCCAGCATC GGGTCTTTGTGGCAGTATGATTTACCAATAACCTCATGTATATTACCTTACCTGTGTGCT TTGTTTTGCTCCTTTGTGATGTCGAAGCAAAAAATTAGAGTAGCATTTTAAAAATCTAAA CTATTCTGCAGCTTACTCACTTGTTTCTCATATAAAAATTCATTTTCTCCAAAAATTTAC AGTCACCAAAACAAAATAAAACTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGAATTATAATTTTAAAGATTGTCCATAGAAGAATAATTAACAGGTTCCACTCCTTTCT GCTCTTTATGGGTCATCCACCTTATGCGATTCGGGAAGTGAACATAAACAAGTTCTGCAG GATCATCAGTGAGTTTGCCCTGGAGTATCGCACCACCAGGGAGAGGGTTTTGCAGCAGAA ACAGAAACGAGCCAACCACAGAGAGAGAAACAAGACCCGAGGGAAGATGATCACTGATTC TGGCAAGTTCTCTGGCAGTTCCCCGGCACCTTCGAGCCAGCCACAGGGCCTGAGCTACGC GGAGGACGCTGCAGAGCACGAGAACATGAAGGCTGTGCTGAAAACCTCGTCCCCTGCCGT GGAGGATGCCACCCCCGTGCTGGGCGTCCGCACCCGCAGCCGAGCGAGCCGAGGATCCAC TAGTTCATGGACTATGGGAATGGATGACTCGCCTAATGTCACAGATGATGCAGCTGATGA GATCATGGACCGCATCGTCAAGTCAGCCACCCAAGTGCCCAGTCAGCGAGTGGTGCCGCG GGAGAGGAAGCGCTCCCGGGCCAACCGGAAGTCCCTTCGAAGGACCCTGAAGAGTGGCTT GACTCCGGAAGAGGCCAGGGCCCTGGGCCTGGTGGGCACCTCGGAGTTGCAGCTGTGACC CCTATGGTGCCTGTGTACCTGCACAGGGCATGAGCTCCTGCTGGAAGGAACCCCTGCAGT GGGAGGTGAGGAGACTCTTAACACCCAAAGGTTCTGAAAGGGGCACCCATGTCTAGGTGT CACTGGCATGGCTTGTGTCACCAGCGGTGCACTGACATGGATCTCGGAGTCTCCTTCACG TACTTTCTTCATCGTGTCAGCTGTGTTTCTCTTGTTTCCTTGACACTTGGTTTAGTAGTT CCGAAGTGTGACACCTTTTCTGTGCAAGGAACAGCCCTTTTAAGGAGCCAATCACTTCTG TCACAATTACTATGGTTATGAGGCAGTCTGATTAGGTTCACAGACTGGGTCTCTCCACAA CACCAAAATATCCAGATGTAAACTCCAAAGTTGTACACAAAAGAAAGCACAGGTTGTTTA TCAGTTGTGGATTTTAGATGTACTAAATGTTTATACAAATTCATAAATGTACACCATGTT TCAAATATTAAATAAATAGAGTTTAATGCCATAACTGGAAAGTTTTTTTTCTCCTGGGTG TAGGATCTTAAACAACCCCACGGGCTCTCCTCCTTCTGCATCAGCAAAACCTCTTCTCAG AGGTATATCAGAAGGACCCTGGCTCGGAACGGCTTCCAGGCCTTTGGGGTTTCTGTTTTG GTTAATGGAGCGAGAAGAACGGACCATGTGCTCTTTGTAATTCCCAGTTAAGCCAGCATC GGGTCTTTGTGGCAGTATGATTTACCAATAACCTCATGTATATTACCTTACCTGTGTGCT TTGTTTTGCTCCTTTGTGATGTCGAAGCAAAAAATTAGAGTAGCATTTTAAAAATCTAAA CTATTCTGCAGCTTACTCACTTGTTTCTCATATAAAAATTCATTTTCTCCAAAAATTTAC AGTCACCAAAACAAAATAAAACTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 43-238, gnl|bosTau2|chr24 (14944127-14943932) | |
| 43-238, gnl|canFam2|chr7 (56482828-56482620) | |
| 43-238, gnl|danRer3|chr9 (2969729-2969945) | |
| 43-238, gnl|dasNov1|scaffold_744 (78216-78008) | |
| 43-238, gnl|echTel1|scaffold_249420 (7220-7393) | |
| 43-238, gnl|fr1|chrUn (174761961-174762169) | |
| 43-238, gnl|galGal2|chr2 (83340926-83341132) | |
| 43-238, gnl|hg17|chr18 (32589079-32589287) | |
| 43-238, gnl|Hg17|chr18 (32589077-32589272) | |
| 43-238, gnl|loxAfr1|scaffold_53484 (10675-10475) | |
| 43-238, gnl|mm7|chr18 (25504775-25504983) | |
| 43-238, gnl|Mm7|chr18 (25504773-25504968) | |
| 43-238, gnl|monDom2|scaffold_4 (10326177-10325969) | |
| 43-238, gnl|oryCun1|scaffold_205918 (46602-46394) | |
| 43-238, gnl|panTro1|chr17 (28566137-28566345) | |
| 43-238, gnl|rheMac2|chr18 (29685267-29685475) | |
| 43-238, gnl|rn3|chr18 (16967389-16967597) | |
| 43-238, gnl|tetNig1|chr8 (6309847-6309647) | |
| 43-238, gnl|xenTro1|scaffold_906 (168297-168501) | |
| 44-237, gnl|bosTau2|chr18 (28749552-28749745) | |
| 44-237, gnl|canFam2|chr5 (85152529-85152330) | |
| 44-237, gnl|danRer3|chrUn (78913372-78913173) | |
| 44-237, gnl|dasNov1|scaffold_49840 (7264-7464) | |
| 44-237, gnl|echTel1|scaffold_155122 (4997-4833) | |
| 44-237, gnl|fr1|chrUn (105597518-105597319) | |
| 44-237, gnl|galGal2|chr11 (1290846-1290647) | |
| 44-237, gnl|hg17|chr16 (65821714-65821913) | |
| 44-237, gnl|Hg17|chr16 (65821912-65821719) | |
| 44-237, gnl|loxAfr1|scaffold_53484 (10476-10675) | |
| 44-237, gnl|mm7|chr8 (103928730-103928929) | |
| 44-237, gnl|Mm7|chr8 (103928928-103928735) | |
| 44-237, gnl|monDom2|scaffold_23 (19667788-19667589) | |
| 44-237, gnl|oryCun1|scaffold_200187 (56245-56444) | |
| 44-237, gnl|panTro1|chr18 (60081365-60081564) | |
| 44-237, gnl|rheMac2|chr20 (65530850-65531049) | |
| 44-237, gnl|rn3|chr19 (35150066-35150265) | |
| 44-237, gnl|tetNig1|chrUn_random (6325387-6325586) | |
| 44-237, gnl|xenTro1|scaffold_387 (600070-600266) | |
| 239-414, gnl|bosTau2|chr24 (14938788-14938613) | |
| 239-414, gnl|Hg17|chr18 (32594569-32594744) | |
| 239-414, gnl|Mm7|chr18 (25510400-25510575) | |
| 578-1576, gnl|bosTau2|chr24 (14917550-14916597) | |
| 578-1576, gnl|Hg17|chr18 (32613411-32614418) | |
| 578-1576, gnl|Mm7|chr18 (25517570-25518519) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 43-238, gnl|bosTau2|chr24 (14944127-14943932) | |
| 43-238, gnl|canFam2|chr7 (56482828-56482620) | |
| 43-238, gnl|danRer3|chr9 (2969729-2969945) | |
| 43-238, gnl|dasNov1|scaffold_744 (78216-78008) | |
| 43-238, gnl|echTel1|scaffold_249420 (7220-7393) | |
| 43-238, gnl|fr1|chrUn (174761961-174762169) | |
| 43-238, gnl|galGal2|chr2 (83340926-83341132) | |
| 43-238, gnl|hg17|chr18 (32589079-32589287) | |
| 43-238, gnl|Hg17|chr18 (32589077-32589272) | |
| 43-238, gnl|loxAfr1|scaffold_53484 (10675-10475) | |
| 43-238, gnl|mm7|chr18 (25504775-25504983) | |
| 43-238, gnl|Mm7|chr18 (25504773-25504968) | |
| 43-238, gnl|monDom2|scaffold_4 (10326177-10325969) | |
| 43-238, gnl|oryCun1|scaffold_205918 (46602-46394) | |
| 43-238, gnl|panTro1|chr17 (28566137-28566345) | |
| 43-238, gnl|rheMac2|chr18 (29685267-29685475) | |
| 43-238, gnl|rn3|chr18 (16967389-16967597) | |
| 43-238, gnl|tetNig1|chr8 (6309847-6309647) | |
| 43-238, gnl|xenTro1|scaffold_906 (168297-168501) | |
| 44-237, gnl|bosTau2|chr18 (28749552-28749745) | |
| 44-237, gnl|canFam2|chr5 (85152529-85152330) | |
| 44-237, gnl|danRer3|chrUn (78913372-78913173) | |
| 44-237, gnl|dasNov1|scaffold_49840 (7264-7464) | |
| 44-237, gnl|echTel1|scaffold_155122 (4997-4833) | |
| 44-237, gnl|fr1|chrUn (105597518-105597319) | |
| 44-237, gnl|galGal2|chr11 (1290846-1290647) | |
| 44-237, gnl|hg17|chr16 (65821714-65821913) | |
| 44-237, gnl|Hg17|chr16 (65821912-65821719) | |
| 44-237, gnl|loxAfr1|scaffold_53484 (10476-10675) | |
| 44-237, gnl|mm7|chr8 (103928730-103928929) | |
| 44-237, gnl|Mm7|chr8 (103928928-103928735) | |
| 44-237, gnl|monDom2|scaffold_23 (19667788-19667589) | |
| 44-237, gnl|oryCun1|scaffold_200187 (56245-56444) | |
| 44-237, gnl|panTro1|chr18 (60081365-60081564) | |
| 44-237, gnl|rheMac2|chr20 (65530850-65531049) | |
| 44-237, gnl|rn3|chr19 (35150066-35150265) | |
| 44-237, gnl|tetNig1|chrUn_random (6325387-6325586) | |
| 44-237, gnl|xenTro1|scaffold_387 (600070-600266) | |
| 239-414, gnl|bosTau2|chr24 (14938788-14938613) | |
| 239-414, gnl|Hg17|chr18 (32594569-32594744) | |
| 239-414, gnl|Mm7|chr18 (25510400-25510575) | |
| 578-1576, gnl|bosTau2|chr24 (14917550-14916597) | |
| 578-1576, gnl|Hg17|chr18 (32613411-32614418) | |
| 578-1576, gnl|Mm7|chr18 (25517570-25518519) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ece (0.229305) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| hlv (0.139256) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| hlv (0.139256) |