Non-Coding RNA Search

Ss1.1-Liv1-LVR010042G09.5

Sequence:


               
               CCTAGTTTACCAGACGTGAGGCCGGAGGTGCTGCCATGGCACCCCTGAGGCCCCTTCTGA
TGCTGGCCCTGCTGGCATGGGTTGTGAGCAAACAGAGCAGTAGAAAAGGCAACTCCTCTT
CTCTGGTTCCCTCATCCATGACCTCTCATCTCTCTGTCCCTTCCTCAGGCATCAGAACCT
AGTTTACCAGACGTGAGGCCGGAGGTGCTGCCATGGCACCCCTGAGGCCCCTTCTGATGC
TGGCCCTGCTGGCATGGGTTGCTCTGGCTGACCAAGAGTCGTGCAAGGGCCGCTGCACAG
ACGGCTTCATTGCCGAAAGGAAGTGTCAGTGTGACGAGCTGTGCTCTTACTACCAGAGCT
GCTGCACTGACTACGTGGCCGAGTGCAAGCCCCAAGTGACTCGCGGGGATGTATTCCTTC
AGCCAGATGATGAGTACAGGGCCTATGACTACCACGAGGAGACCAGACACAACACCAGCG
TCCAAGAAGAGCAGAGGATCCCTGTCCTGCTGGCCAAGACTGAAGAGACTCCGGTTCTGA
AACCTGAGGAAGAGGCCCCACCACCTGGGCCTCAGACTGATGATCTAGGGGTCCCTGAGG
AAGAGCTGTGCAGTGGGAAACCCTTTGATGCCTTCACCAACCTCAAGAACGGTTCCGTCT
TTGCCTTCCGAGGGCTGTACTGCTATGAGCTGGATGAAAAGGCAGTGAGGCCTGGGTACC
CCAAGCTCATCCAAGATGTCTGGGGCATCAAGGGCCCCATTGATGCCGCCTTCACCCGCA
TCAACTGTCAGGGGAAGACCTACCTCTTCAAGGGTAGTCAGTACTGGCGCTTTGATGATG
GTGTCCTGGACCCCAATTACCCCCGCGAGATCTCTGAAGGCTTCAAGGGTATTCCGGACG
ATGTGGATGCAGCCTTGGCCCTGCCGGCTCATAGCTACAGTGGCCGGGAGCGGGTCTACT
TCTTCAAAGGGAAACAGTACTGGGAGTATGTGTTCCAGCAGCAGCCCAGTCGAGAGGAGT
GCGAAGGCAGCTCCCCGTCGGACGTCTTTGCACACTTTGCCCTGATGCAGCGGGACAGCT
GGGAGGACATCTTCAGACTTCTCTTCTGGAGCCATTCCTTTGGTGGTGCCATAGAGCCCC
GGGTCATCAGCCAGGACTGGCTTGGTTTGCCTGAACAAGTGGATGCGGCCATGGCTGGCC
AAATTTACATCTCAGGCTCAGCCCTCAAGCCCTCCCAGCCCAAGATGACTAAGTCTGCAC
GTCGCAGTGGTAAACGCTACCGCTCACGCCGTGGCCGTGGCCGTGGCCGAGGCCACAGCC
GCAGCCAGAAGTCCCACCGGCAGTCTCGTTCAACCTGGCTGCCCTGGTTCTCCAGTGAGG
AGACTGGCCCAGGAGGCTACAACTATGATGACTATAAGATGGACTGGCTCGTGCCTGCCA
CCTGTGAGCCCATCCAGAGCGTCTACTTCTTCTCAGGAGAGGAGTACTACCGAGTGAACC
TGCGCACGCAGCGAGTGGACACTGTGACCCCTCCCTACCCACGCTCCATCGCCCAGTACT
GGCTGGGCTGCCCAGTTCCAGACCAGAAGTAAGAGTCCGAGTCTGAATCCACACAGCTGA
GTCTCTGCTGCTGCCCTCTCTAGCCTCCCCCTCCCAGCCCAATAAAGAGTCCTTGGCCCT
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTAGTTTACCAGACGTGAGGCCGGAGGTGCTGCCATGGCACCCCTGAGGCCCCTTCTGA
TGCTGGCCCTGCTGGCATGGGTTGTGAGCAAACAGAGCAGTAGAAAAGGCAACTCCTCTT
CTCTGGTTCCCTCATCCATGACCTCTCATCTCTCTGTCCCTTCCTCAGGCATCAGAACCT
AGTTTACCAGACGTGAGGCCGGAGGTGCTGCCATGGCACCCCTGAGGCCCCTTCTGATGC
TGGCCCTGCTGGCATGGGTTGCTCTGGCTGACCAAGAGTCGTGCAAGGGCCGCTGCACAG
ACGGCTTCATTGCCGAAAGGAAGTGTCAGTGTGACGAGCTGTGCTCTTACTACCAGAGCT
GCTGCACTGACTACGTGGCCGAGTGCAAGCCCCAAGTGACTCGCGGGGATGTATTCCTTC
AGCCAGATGATGAGTACAGGGCCTATGACTACCACGAGGAGACCAGACACAACACCAGCG
TCCAAGAAGAGCAGAGGATCCCTGTCCTGCTGGCCAAGACTGAAGAGACTCCGGTTCTGA
AACCTGAGGAAGAGGCCCCACCACCTGGGCCTCAGACTGATGATCTAGGGGTCCCTGAGG
AAGAGCTGTGCAGTGGGAAACCCTTTGATGCCTTCACCAACCTCAAGAACGGTTCCGTCT
TTGCCTTCCGAGGGCTGTACTGCTATGAGCTGGATGAAAAGGCAGTGAGGCCTGGGTACC
CCAAGCTCATCCAAGATGTCTGGGGCATCAAGGGCCCCATTGATGCCGCCTTCACCCGCA
TCAACTGTCAGGGGAAGACCTACCTCTTCAAGGGTAGTCAGTACTGGCGCTTTGATGATG
GTGTCCTGGACCCCAATTACCCCCGCGAGATCTCTGAAGGCTTCAAGGGTATTCCGGACG
ATGTGGATGCAGCCTTGGCCCTGCCGGCTCATAGCTACAGTGGCCGGGAGCGGGTCTACT
TCTTCAAAGGGAAACAGTACTGGGAGTATGTGTTCCAGCAGCAGCCCAGTCGAGAGGAGT
GCGAAGGCAGCTCCCCGTCGGACGTCTTTGCACACTTTGCCCTGATGCAGCGGGACAGCT
GGGAGGACATCTTCAGACTTCTCTTCTGGAGCCATTCCTTTGGTGGTGCCATAGAGCCCC
GGGTCATCAGCCAGGACTGGCTTGGTTTGCCTGAACAAGTGGATGCGGCCATGGCTGGCC
AAATTTACATCTCAGGCTCAGCCCTCAAGCCCTCCCAGCCCAAGATGACTAAGTCTGCAC
GTCGCAGTGGTAAACGCTACCGCTCACGCCGTGGCCGTGGCCGTGGCCGAGGCCACAGCC
GCAGCCAGAAGTCCCACCGGCAGTCTCGTTCAACCTGGCTGCCCTGGTTCTCCAGTGAGG
AGACTGGCCCAGGAGGCTACAACTATGATGACTATAAGATGGACTGGCTCGTGCCTGCCA
CCTGTGAGCCCATCCAGAGCGTCTACTTCTTCTCAGGAGAGGAGTACTACCGAGTGAACC
TGCGCACGCAGCGAGTGGACACTGTGACCCCTCCCTACCCACGCTCCATCGCCCAGTACT
GGCTGGGCTGCCCAGTTCCAGACCAGAAGTAAGAGTCCGAGTCTGAATCCACACAGCTGA
GTCTCTGCTGCTGCCCTCTCTAGCCTCCCCCTCCCAGCCCAATAAAGAGTCCTTGGCCCT
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               VTNC_PIG

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               VTNC_PIG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               143-813, - strand, RNAz p=0.988939

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               143-813, - strand, RNAz p=0.988939

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               71-289, gnl|bosTau2|chr19 (13401499-13401264)
               

               
               71-289, gnl|Hg17|chr17 (23721515-23721277)
               

               
               71-289, gnl|Mm7|chr11 (78580781-78580999)
               


               
               668-813, gnl|bosTau2|chr19 (13400578-13400433)
               

               
               668-813, gnl|Hg17|chr17 (23720581-23720436)
               

               
               668-813, gnl|Mm7|chr11 (78581692-78581837)
               


               
               1122-1479, gnl|bosTau2|chr19 (13399381-13399030)
               

               
               1122-1479, gnl|Hg17|chr17 (23719208-23718863)
               

               
               1122-1479, gnl|Mm7|chr11 (78583148-78583499)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-289, gnl|bosTau2|chr19 (13401499-13401264)
               

               
               71-289, gnl|Hg17|chr17 (23721515-23721277)
               

               
               71-289, gnl|Mm7|chr11 (78580781-78580999)
               


               
               668-813, gnl|bosTau2|chr19 (13400578-13400433)
               

               
               668-813, gnl|Hg17|chr17 (23720581-23720436)
               

               
               668-813, gnl|Mm7|chr11 (78581692-78581837)
               


               
               1122-1479, gnl|bosTau2|chr19 (13399381-13399030)
               

               
               1122-1479, gnl|Hg17|chr17 (23719208-23718863)
               

               
               1122-1479, gnl|Mm7|chr11 (78583148-78583499)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               cli (14.2115)
               

               
               fli (5.68067)
               

               
               eli (2.42903)
               

               
               lun (0.902935)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (14.2115)
               

               
               fli (5.68067)
               

               
               eli (2.42903)
               

               
               lun (0.902935)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)

	71-289, gnl\|bosTau2\|chr19 (13401499-13401264)
	71-289, gnl\|Hg17\|chr17 (23721515-23721277)
	71-289, gnl\|Mm7\|chr11 (78580781-78580999)

	668-813, gnl\|bosTau2\|chr19 (13400578-13400433)
	668-813, gnl\|Hg17\|chr17 (23720581-23720436)
	668-813, gnl\|Mm7\|chr11 (78581692-78581837)

	1122-1479, gnl\|bosTau2\|chr19 (13399381-13399030)
	1122-1479, gnl\|Hg17\|chr17 (23719208-23718863)
	1122-1479, gnl\|Mm7\|chr11 (78583148-78583499)

	cli (14.2115)
	fli (5.68067)
	eli (2.42903)
	lun (0.902935)
	pty (0.142714)
	nmm (0.132802)