Ss1.1-Liv1-LVR010042H06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAGAGAGTGGTAAGTAAATGCTTGAGTGCTTGGGGACAGTAAAGTCAGATATTATCAA GTCTTCTGTGTACACTGAAGAACATGGCCAAGCGAGTTGCAATTGTGGGAGCTGGGGTCA GTGGCCTGGCCTCCATCAAGTGCTGCCTGGAGGAAGGGCTGGAGCCCACCTGCTTTGAGA GGAGCGATGACCTTGGGGGGCTGTGGAGATTCACTGAACATGTTGAAGAAGGCAGAGCCA GCCTCTACAAGTCTGTGGTTTCCAACAGCTGCAAGGAGATGTCTTGTTACCCAGACTTTC CATTCCCAGAAGATTACCCAAACTATGTGCCAAATTCTCACTTCCTGGAATATCTCAGAA TGTATGCAAACCAGTTCAACCTTCTGAAGTGCATTCAATTCAAGACTAAAGTCTGCAGTG TAACAAAACATGAAGATTTTAATACCACCGGTCAATGGGATGTAGTCACTCTGTGTGAAG GAAAGCAAGAGTCAGCCGTCTTTGATGCTGTCATGGTCTGCACTGGTTTTCTCACTAACC CATATTTGCCATTGGACTCCTTCCCAGGCATAAATACTTTTAAAGGCCAGTATTTCCATA GCCGACAGTATAAACATCCAGATATATTTAAGGACAAGAGTGTTCTTGTGGTTGGAATGG GAAATTCGGGCACAGACATTGCTGTGGAGGCCAGCCACCTGGCAAAAAAGGTGTTCCTCA GCACCACTGGAGGAGCATGGGTGATCAGCCGTGTCTTTGACTCAGGGTACCCATGGGACA TGGTGTTCATGACACGATTTCAGAACATGTTCAGAAATTCTCTCCCAACTCCAATTGTGA ATTGGTTGATAGCAAAAAAGATGAACAGCTGGTTCAATCATGCAAATTATGGCTTAATAC CCGAAGACAGGATACAACTAAGAGAGCCTGTGCTGAATGATGAGCTCCCAGGCCGTATCA TCACTGGGAAAGTGCTCATCAAGCCAAGTATAAAGGAGGTGAAGGAAAACTCCGTGGTAT TTAACAGCTCCCCAGAGGAAGAGCCCATTGATATCATTGTCTTTGCCACTGGATACACCT TTGCTTTCCCCTTCCTTGATGAGAGTGTAGTGAAGGTTGAAGATGGCCAGGCATCACTAT ACAAGTACATCTTCCCTGCACATCTGCAGAAGCCAACTCTGGCTGTTATTGGCCTCATCA AACCCTTGGGCTCCTTACTACCCACAGGGGATACACAAGCTCGGTGGGCTGTTCGGGTCC TGAAAGGTGTGAATAAGTTACCACCATCAAGTGTCATGATACAGGAAGTTAATACAAGAA AAGAAAACAAGCCCAGTGGGTTTGGCTTGTGTTACTGCAAAGCTTTACAATCCGATTATA TTGCATACATAGATGAACTGCTGACCTATATCGATGCAAAGCCCAACATGTTTTCTCTGC TCCTGACGGATCCACACCTGGCTTTGACCATCTTCTTTGGCCCATGCACACCATACCAGT TCCGCCTGACTGGTCCAGGGAAATGGGAAGGAGCCAGGAATGCTATCATGACCCAGTGGG ACCGAACATTCAAGGTCACCAAAACTCGAATTGTAAAAGAATCCCCATCTCCCTTTGCAA GCTTACTTAAACTCTTTAGCTTTCTAGCCTTGCTTGTGGCCATTTTCCAGATTTTCCTCT AAGTATTACTGAATGGATTATTAAATGCACTGAGTAGACGGTTAGTACTCTGGCTCCTCC ACTGCAGCAGCATTGCCTCCCCAGCTATGAATCATATTTGAGTAGTGAAAGCCACCCATG CCCTTCCCTGGCTAGCTTAAGCATTACCACTAATACTCCCAAGTGTCCTCAGCTCTACCT GCTTCCAATGCTAGAGGAAGATAACCAAAATTTCTGTGCATTTGAAAGCTGCTAGAAGGT TCAAGGTTCATTTTAGAAGGGAGGGCTGTCCCAGACAGCACTCTGAGCAATTAGGCCTCT TTCCTATTTTCATAGATCTCGACTAAAATTCCCTACTTCACAGAAGATTTTGTTGTACTA AAATCAGTTGATTTTGTTGTACTAAAATGGTATCAGTTGATTAAAAATAAAAAGAAAGGA AAGTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAGAGAGTGGTAAGTAAATGCTTGAGTGCTTGGGGACAGTAAAGTCAGATATTATCAA GTCTTCTGTGTACACTGAAGAACATGGCCAAGCGAGTTGCAATTGTGGGAGCTGGGGTCA GTGGCCTGGCCTCCATCAAGTGCTGCCTGGAGGAAGGGCTGGAGCCCACCTGCTTTGAGA GGAGCGATGACCTTGGGGGGCTGTGGAGATTCACTGAACATGTTGAAGAAGGCAGAGCCA GCCTCTACAAGTCTGTGGTTTCCAACAGCTGCAAGGAGATGTCTTGTTACCCAGACTTTC CATTCCCAGAAGATTACCCAAACTATGTGCCAAATTCTCACTTCCTGGAATATCTCAGAA TGTATGCAAACCAGTTCAACCTTCTGAAGTGCATTCAATTCAAGACTAAAGTCTGCAGTG TAACAAAACATGAAGATTTTAATACCACCGGTCAATGGGATGTAGTCACTCTGTGTGAAG GAAAGCAAGAGTCAGCCGTCTTTGATGCTGTCATGGTCTGCACTGGTTTTCTCACTAACC CATATTTGCCATTGGACTCCTTCCCAGGCATAAATACTTTTAAAGGCCAGTATTTCCATA GCCGACAGTATAAACATCCAGATATATTTAAGGACAAGAGTGTTCTTGTGGTTGGAATGG GAAATTCGGGCACAGACATTGCTGTGGAGGCCAGCCACCTGGCAAAAAAGGTGTTCCTCA GCACCACTGGAGGAGCATGGGTGATCAGCCGTGTCTTTGACTCAGGGTACCCATGGGACA TGGTGTTCATGACACGATTTCAGAACATGTTCAGAAATTCTCTCCCAACTCCAATTGTGA ATTGGTTGATAGCAAAAAAGATGAACAGCTGGTTCAATCATGCAAATTATGGCTTAATAC CCGAAGACAGGATACAACTAAGAGAGCCTGTGCTGAATGATGAGCTCCCAGGCCGTATCA TCACTGGGAAAGTGCTCATCAAGCCAAGTATAAAGGAGGTGAAGGAAAACTCCGTGGTAT TTAACAGCTCCCCAGAGGAAGAGCCCATTGATATCATTGTCTTTGCCACTGGATACACCT TTGCTTTCCCCTTCCTTGATGAGAGTGTAGTGAAGGTTGAAGATGGCCAGGCATCACTAT ACAAGTACATCTTCCCTGCACATCTGCAGAAGCCAACTCTGGCTGTTATTGGCCTCATCA AACCCTTGGGCTCCTTACTACCCACAGGGGATACACAAGCTCGGTGGGCTGTTCGGGTCC TGAAAGGTGTGAATAAGTTACCACCATCAAGTGTCATGATACAGGAAGTTAATACAAGAA AAGAAAACAAGCCCAGTGGGTTTGGCTTGTGTTACTGCAAAGCTTTACAATCCGATTATA TTGCATACATAGATGAACTGCTGACCTATATCGATGCAAAGCCCAACATGTTTTCTCTGC TCCTGACGGATCCACACCTGGCTTTGACCATCTTCTTTGGCCCATGCACACCATACCAGT TCCGCCTGACTGGTCCAGGGAAATGGGAAGGAGCCAGGAATGCTATCATGACCCAGTGGG ACCGAACATTCAAGGTCACCAAAACTCGAATTGTAAAAGAATCCCCATCTCCCTTTGCAA GCTTACTTAAACTCTTTAGCTTTCTAGCCTTGCTTGTGGCCATTTTCCAGATTTTCCTCT AAGTATTACTGAATGGATTATTAAATGCACTGAGTAGACGGTTAGTACTCTGGCTCCTCC ACTGCAGCAGCATTGCCTCCCCAGCTATGAATCATATTTGAGTAGTGAAAGCCACCCATG CCCTTCCCTGGCTAGCTTAAGCATTACCACTAATACTCCCAAGTGTCCTCAGCTCTACCT GCTTCCAATGCTAGAGGAAGATAACCAAAATTTCTGTGCATTTGAAAGCTGCTAGAAGGT TCAAGGTTCATTTTAGAAGGGAGGGCTGTCCCAGACAGCACTCTGAGCAATTAGGCCTCT TTCCTATTTTCATAGATCTCGACTAAAATTCCCTACTTCACAGAAGATTTTGTTGTACTA AAATCAGTTGATTTTGTTGTACTAAAATGGTATCAGTTGATTAAAAATAAAAAGAAAGGA AAGTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 909-1027, - strand, RNAz p=0.599414 | |
| 1108-1227, - strand, RNAz p=0.899337 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 909-1027, - strand, RNAz p=0.599414 | |
| 1108-1227, - strand, RNAz p=0.899337 |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 72-214, gnl|bosTau2|chr16 (27060581-27060723) | |
| 72-214, gnl|canFam2|chr7 (30585442-30585277) | |
| 72-214, gnl|danRer3|chr20 (14996208-14996355) | |
| 72-214, gnl|dasNov1|scaffold_301726 (547-712) | |
| 72-214, gnl|echTel1|scaffold_281477 (79405-79244) | |
| 72-214, gnl|fr1|chrUn (207606466-207606606) | |
| 72-214, gnl|hg17|chr1 (167958873-167959038) | |
| 72-214, gnl|Hg17|chr1 (167958873-167959015) | |
| 72-214, gnl|loxAfr1|scaffold_10646 (24935-25100) | |
| 72-214, gnl|mm7|chr1 (162820575-162820408) | |
| 72-214, gnl|Mm7|chr1 (162820573-162820431) | |
| 72-214, gnl|monDom2|scaffold_16 (22418575-22418740) | |
| 72-214, gnl|oryCun1|scaffold_201801 (4974-5139) | |
| 72-214, gnl|panTro1|chr1_random (31606556-31606391) | |
| 72-214, gnl|rheMac2|chr1 (200972934-200973099) | |
| 72-214, gnl|rn3|chr13 (78543855-78543688) | |
| 72-214, gnl|tetNig1|chr1_random (2754105-2753950) | |
| 72-214, gnl|xenTro1|scaffold_74 (1125573-1125449) | |
| 216-404, gnl|bosTau2|chr16 (27074027-27074215) | |
| 216-404, gnl|canFam2|chr7 (30580906-30580704) | |
| 216-404, gnl|dasNov1|scaffold_7939 (45752-45954) | |
| 216-404, gnl|echTel1|scaffold_278520 (85649-85447) | |
| 216-404, gnl|fr1|chrUn (207606664-207606866) | |
| 216-404, gnl|galGal2|chr8 (4752892-4752690) | |
| 216-404, gnl|hg17|chr1 (167968332-167968534) | |
| 216-404, gnl|Hg17|chr1 (167968340-167968528) | |
| 216-404, gnl|loxAfr1|scaffold_21366 (4873-5072) | |
| 216-404, gnl|mm7|chr1 (162812558-162812356) | |
| 216-404, gnl|Mm7|chr1 (162812548-162812360) | |
| 216-404, gnl|monDom2|scaffold_16 (22423250-22423452) | |
| 216-404, gnl|oryCun1|scaffold_185022 (352-553) | |
| 216-404, gnl|panTro1|chr1_random (31597093-31596891) | |
| 216-404, gnl|rheMac2|chr1 (200981912-200982114) | |
| 216-404, gnl|rn3|chr13 (78532885-78532683) | |
| 216-404, gnl|tetNig1|chr1_random (2753897-2753695) | |
| 216-404, gnl|xenTro1|scaffold_74 (1123151-1122950) | |
| 566-715, gnl|bosTau2|chr16 (27081673-27081822) | |
| 566-715, gnl|Hg17|chr1 (167979524-167979672) | |
| 566-715, gnl|Mm7|chr1 (162800767-162800618) | |
| 909-1277, gnl|bosTau2|chr16 (27086951-27087321) | |
| 909-1277, gnl|Hg17|chr1 (167982773-167983141) | |
| 909-1277, gnl|Mm7|chr1 (162795114-162794744) | |
| 1339-2102, gnl|bosTau2|chr16 (27089833-27090596) | |
| 1339-2102, gnl|Hg17|chr1 (167985998-167986756) | |
| 1339-2102, gnl|Mm7|chr1 (162791542-162790800) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 72-214, gnl|bosTau2|chr16 (27060581-27060723) | |
| 72-214, gnl|canFam2|chr7 (30585442-30585277) | |
| 72-214, gnl|danRer3|chr20 (14996208-14996355) | |
| 72-214, gnl|dasNov1|scaffold_301726 (547-712) | |
| 72-214, gnl|echTel1|scaffold_281477 (79405-79244) | |
| 72-214, gnl|fr1|chrUn (207606466-207606606) | |
| 72-214, gnl|hg17|chr1 (167958873-167959038) | |
| 72-214, gnl|Hg17|chr1 (167958873-167959015) | |
| 72-214, gnl|loxAfr1|scaffold_10646 (24935-25100) | |
| 72-214, gnl|mm7|chr1 (162820575-162820408) | |
| 72-214, gnl|Mm7|chr1 (162820573-162820431) | |
| 72-214, gnl|monDom2|scaffold_16 (22418575-22418740) | |
| 72-214, gnl|oryCun1|scaffold_201801 (4974-5139) | |
| 72-214, gnl|panTro1|chr1_random (31606556-31606391) | |
| 72-214, gnl|rheMac2|chr1 (200972934-200973099) | |
| 72-214, gnl|rn3|chr13 (78543855-78543688) | |
| 72-214, gnl|tetNig1|chr1_random (2754105-2753950) | |
| 72-214, gnl|xenTro1|scaffold_74 (1125573-1125449) | |
| 216-404, gnl|bosTau2|chr16 (27074027-27074215) | |
| 216-404, gnl|canFam2|chr7 (30580906-30580704) | |
| 216-404, gnl|dasNov1|scaffold_7939 (45752-45954) | |
| 216-404, gnl|echTel1|scaffold_278520 (85649-85447) | |
| 216-404, gnl|fr1|chrUn (207606664-207606866) | |
| 216-404, gnl|galGal2|chr8 (4752892-4752690) | |
| 216-404, gnl|hg17|chr1 (167968332-167968534) | |
| 216-404, gnl|Hg17|chr1 (167968340-167968528) | |
| 216-404, gnl|loxAfr1|scaffold_21366 (4873-5072) | |
| 216-404, gnl|mm7|chr1 (162812558-162812356) | |
| 216-404, gnl|Mm7|chr1 (162812548-162812360) | |
| 216-404, gnl|monDom2|scaffold_16 (22423250-22423452) | |
| 216-404, gnl|oryCun1|scaffold_185022 (352-553) | |
| 216-404, gnl|panTro1|chr1_random (31597093-31596891) | |
| 216-404, gnl|rheMac2|chr1 (200981912-200982114) | |
| 216-404, gnl|rn3|chr13 (78532885-78532683) | |
| 216-404, gnl|tetNig1|chr1_random (2753897-2753695) | |
| 216-404, gnl|xenTro1|scaffold_74 (1123151-1122950) | |
| 566-715, gnl|bosTau2|chr16 (27081673-27081822) | |
| 566-715, gnl|Hg17|chr1 (167979524-167979672) | |
| 566-715, gnl|Mm7|chr1 (162800767-162800618) | |
| 909-1277, gnl|bosTau2|chr16 (27086951-27087321) | |
| 909-1277, gnl|Hg17|chr1 (167982773-167983141) | |
| 909-1277, gnl|Mm7|chr1 (162795114-162794744) | |
| 1339-2102, gnl|bosTau2|chr16 (27089833-27090596) | |
| 1339-2102, gnl|Hg17|chr1 (167985998-167986756) | |
| 1339-2102, gnl|Mm7|chr1 (162791542-162790800) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| lun (2.40783) | |
| bla (1.36782) | |
| liv (1.17027) | |
| mgm (0.541028) | |
| kid (0.518941) | |
| cli (0.458435) | |
| rec (0.346141) | |
| cki (0.330469) | |
| tbr (0.308356) | |
| fat (0.294855) | |
| cov (0.264306) | |
| mas (0.210305) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| cut (0.169924) | |
| eli (0.151814) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| tra (0.123092) | |
| med (0.116252) | |
| jca (0.11396) | |
| ldo (0.0970026) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (2.40783) | |
| bla (1.36782) | |
| liv (1.17027) | |
| mgm (0.541028) | |
| kid (0.518941) | |
| cli (0.458435) | |
| rec (0.346141) | |
| cki (0.330469) | |
| tbr (0.308356) | |
| fat (0.294855) | |
| cov (0.264306) | |
| mas (0.210305) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| cut (0.169924) | |
| eli (0.151814) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| tra (0.123092) | |
| med (0.116252) | |
| jca (0.11396) | |
| ldo (0.0970026) |