Ss1.1-Liv1-LVR010042H12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGCAGGAAAGATGGCGGCGGCGGCTGCTCAGGGTGGGAGATCCGGTGGTGGCGGAGGCA GTAGTGGGGCTGGCGGCGGTCCCAGCTGCGGGACGGGCAGTAGCCGTAGCGGCTTGTTGG ACAAGTGGAAGATTGATGATAAGCCTGTGAAAATTGACAAATGGGATGGATCGGCTGTGA AAAATTCTTTGGATGATTCCGCCAAAAAGGTACTTCTGGAAAAGTACAAGTATGTGGAGA ATTTTGGTCTAATTGACGGTCGCCTCACCATCTGTACCATCTCCTGTTTCTTTGCCATAG TGGCTTTGATTTGGGATTATATGCACCCCTTTCCAGAGTCCAAGCCTGTTTTGGCTTTGT GTGTCATATCCTATTTTGTGATGATGGGGATCCTGACCATTTATACGTCGTATAAGGAGA AGAGCATTTTCCTCGTGGCCCACAGGAAAGATCCTACAGGGATGGATCCGGATGATATTT GGCAGCTGTCATCCAGTCTCAAAAGGTTCGATGACAAATACACTCTGAAGCTGACCTTCA TCAGTGGAAGAACAAAGCAGCAACGGGAAGCCGAGTTCACCAAGTCCATTGCTAAGTTTT TTGACCACAGTGGGACACTGGTCATGGATGCATACGAGCCTGAAATATCAAGGCTCCATG ACAGTCTCGCCACAGAAAGAAAAATAAAATAGCCAGTTCTAAAAGCAGCCATCTTTCTGC TGGATCGTGCTGAATCGAAGGGTGAGGGAAAAGAAATAGAAGCCCTAAAATGGATTAACG TAAGAGATATTAAAAATGTCCCCATTTTGTCCTAAAGTTTTAGTCTATTCTGGATAAATA GGATTTTCTAGCTCAGATATGAGAAGTTGTAGCTCTGATAGCTAGCTATAGCCTCTTTGG TCTGCTGATTGCATTGTTTTGATTTGCTTTTCTGGAAAAGCATTTTTGCTAAGAGCTGTA CAAATTCTTCCTTCATACCTAGCAGTACTTTATATAGTATAGCTTTGTGCCATGCCGCCT CTGAAGACTAAGTTTAATTGTTAACCTGTTGCTAACTTTATTGTGTTAATGCCCGTTTCA ATAGCTGTTTCCCTTAATCCAGGATACAACTTCTTGTGTACAACAATTTTCTTTCACACA CCGTTTTTGTGGGTGTGTATATATCTGACTTGGGGAGAATTGGGGGAAGAAAACACAGCT TTTTAATTCGTTTAAAAAAGACTTTTTGCCTGTTACATTTTTGTGCTCTTAACCAATTAA AGAAGCCAATGGTATTTTTAGTTTTATCTTGTCTATGTTTTCCACTAGTATATCCCTGTT GATTTCCCTGTTGATTTGTTTGTGCCCTTTATTAACTGCCGTTTTCTAAAATTTTTTTCA ATAAAAGGAAAGAAGATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGCAGGAAAGATGGCGGCGGCGGCTGCTCAGGGTGGGAGATCCGGTGGTGGCGGAGGCA GTAGTGGGGCTGGCGGCGGTCCCAGCTGCGGGACGGGCAGTAGCCGTAGCGGCTTGTTGG ACAAGTGGAAGATTGATGATAAGCCTGTGAAAATTGACAAATGGGATGGATCGGCTGTGA AAAATTCTTTGGATGATTCCGCCAAAAAGGTACTTCTGGAAAAGTACAAGTATGTGGAGA ATTTTGGTCTAATTGACGGTCGCCTCACCATCTGTACCATCTCCTGTTTCTTTGCCATAG TGGCTTTGATTTGGGATTATATGCACCCCTTTCCAGAGTCCAAGCCTGTTTTGGCTTTGT GTGTCATATCCTATTTTGTGATGATGGGGATCCTGACCATTTATACGTCGTATAAGGAGA AGAGCATTTTCCTCGTGGCCCACAGGAAAGATCCTACAGGGATGGATCCGGATGATATTT GGCAGCTGTCATCCAGTCTCAAAAGGTTCGATGACAAATACACTCTGAAGCTGACCTTCA TCAGTGGAAGAACAAAGCAGCAACGGGAAGCCGAGTTCACCAAGTCCATTGCTAAGTTTT TTGACCACAGTGGGACACTGGTCATGGATGCATACGAGCCTGAAATATCAAGGCTCCATG ACAGTCTCGCCACAGAAAGAAAAATAAAATAGCCAGTTCTAAAAGCAGCCATCTTTCTGC TGGATCGTGCTGAATCGAAGGGTGAGGGAAAAGAAATAGAAGCCCTAAAATGGATTAACG TAAGAGATATTAAAAATGTCCCCATTTTGTCCTAAAGTTTTAGTCTATTCTGGATAAATA GGATTTTCTAGCTCAGATATGAGAAGTTGTAGCTCTGATAGCTAGCTATAGCCTCTTTGG TCTGCTGATTGCATTGTTTTGATTTGCTTTTCTGGAAAAGCATTTTTGCTAAGAGCTGTA CAAATTCTTCCTTCATACCTAGCAGTACTTTATATAGTATAGCTTTGTGCCATGCCGCCT CTGAAGACTAAGTTTAATTGTTAACCTGTTGCTAACTTTATTGTGTTAATGCCCGTTTCA ATAGCTGTTTCCCTTAATCCAGGATACAACTTCTTGTGTACAACAATTTTCTTTCACACA CCGTTTTTGTGGGTGTGTATATATCTGACTTGGGGAGAATTGGGGGAAGAAAACACAGCT TTTTAATTCGTTTAAAAAAGACTTTTTGCCTGTTACATTTTTGTGCTCTTAACCAATTAA AGAAGCCAATGGTATTTTTAGTTTTATCTTGTCTATGTTTTCCACTAGTATATCCCTGTT GATTTCCCTGTTGATTTGTTTGTGCCCTTTATTAACTGCCGTTTTCTAAAATTTTTTTCA ATAAAAGGAAAGAAGATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 208-366, - strand, RNAz p=0.629361 | |
| 583-702, - strand, RNAz p=0.824793 | |
| 858-976, + strand, RNAz p=0.860312 | |
| 1058-1164, - strand, RNAz p=0.999737 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 208-366, - strand, RNAz p=0.629361 | |
| 583-702, - strand, RNAz p=0.824793 | |
| 858-976, + strand, RNAz p=0.860312 | |
| 1058-1164, - strand, RNAz p=0.999737 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_014752, + |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-125, gnl|bosTau2|chr8 (11648417-11648541) | |
| 1-125, gnl|canFam2|chr21 (26514880-26514707) | |
| 1-125, gnl|dasNov1|scaffold_159869 (3136-3295) | |
| 1-125, gnl|echTel1|scaffold_319597 (2678-2509) | |
| 1-125, gnl|galGal2|chr1 (187066713-187066815) | |
| 1-125, gnl|hg17|chr11 (74337939-74338112) | |
| 1-125, gnl|Hg17|chr11 (74337968-74338092) | |
| 1-125, gnl|loxAfr1|scaffold_88016 (6464-6636) | |
| 1-125, gnl|mm7|chr7 (95889716-95889543) | |
| 1-125, gnl|Mm7|chr7 (95889685-95889561) | |
| 1-125, gnl|monDom2|scaffold_74 (2213222-2213047) | |
| 1-125, gnl|oryCun1|scaffold_198333 (83303-83476) | |
| 1-125, gnl|panTro1|chr9_random (35512552-35512725) | |
| 1-125, gnl|rheMac2|chr14 (73116719-73116892) | |
| 1-125, gnl|rn3|chr1 (157295843-157295670) | |
| 208-374, gnl|bosTau2|chr8 (11663433-11663599) | |
| 208-374, gnl|canFam2|chr21 (26499483-26499317) | |
| 208-374, gnl|danRer3|chr15 (7745584-7745751) | |
| 208-374, gnl|dasNov1|scaffold_1273 (134779-134938) | |
| 208-374, gnl|echTel1|scaffold_324309 (45560-45394) | |
| 208-374, gnl|galGal2|chr1 (187072952-187073117) | |
| 208-374, gnl|hg17|chr11 (74354450-74354616) | |
| 208-374, gnl|Hg17|chr11 (74354454-74354620) | |
| 208-374, gnl|loxAfr1|scaffold_118100 (4033-4199) | |
| 208-374, gnl|mm7|chr7 (95879264-95879098) | |
| 208-374, gnl|Mm7|chr7 (95879258-95879092) | |
| 208-374, gnl|monDom2|scaffold_74 (2195731-2195565) | |
| 208-374, gnl|oryCun1|scaffold_174138 (44723-44880) | |
| 208-374, gnl|panTro1|chr9 (75642091-75642257) | |
| 208-374, gnl|rheMac2|chr14 (73134357-73134523) | |
| 208-374, gnl|rn3|chr1 (157285345-157285179) | |
| 208-374, gnl|tetNig1|chrUn_random (135718915-135719081) | |
| 504-1405, gnl|bosTau2|chr8 (11671331-11672223) | |
| 504-1405, gnl|Hg17|chr11 (74365548-74366434) | |
| 504-1405, gnl|Mm7|chr7 (95870682-95869698) | |
| 1194-1394, gnl|bosTau2|chr23 (22414991-22414804) | |
| 1194-1394, gnl|Hg17|chr1 (28105891-28105709) | |
| 1194-1394, gnl|Mm7|chr2 (129118465-129118270) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-125, gnl|bosTau2|chr8 (11648417-11648541) | |
| 1-125, gnl|canFam2|chr21 (26514880-26514707) | |
| 1-125, gnl|dasNov1|scaffold_159869 (3136-3295) | |
| 1-125, gnl|echTel1|scaffold_319597 (2678-2509) | |
| 1-125, gnl|galGal2|chr1 (187066713-187066815) | |
| 1-125, gnl|hg17|chr11 (74337939-74338112) | |
| 1-125, gnl|Hg17|chr11 (74337968-74338092) | |
| 1-125, gnl|loxAfr1|scaffold_88016 (6464-6636) | |
| 1-125, gnl|mm7|chr7 (95889716-95889543) | |
| 1-125, gnl|Mm7|chr7 (95889685-95889561) | |
| 1-125, gnl|monDom2|scaffold_74 (2213222-2213047) | |
| 1-125, gnl|oryCun1|scaffold_198333 (83303-83476) | |
| 1-125, gnl|panTro1|chr9_random (35512552-35512725) | |
| 1-125, gnl|rheMac2|chr14 (73116719-73116892) | |
| 1-125, gnl|rn3|chr1 (157295843-157295670) | |
| 208-374, gnl|bosTau2|chr8 (11663433-11663599) | |
| 208-374, gnl|canFam2|chr21 (26499483-26499317) | |
| 208-374, gnl|danRer3|chr15 (7745584-7745751) | |
| 208-374, gnl|dasNov1|scaffold_1273 (134779-134938) | |
| 208-374, gnl|echTel1|scaffold_324309 (45560-45394) | |
| 208-374, gnl|galGal2|chr1 (187072952-187073117) | |
| 208-374, gnl|hg17|chr11 (74354450-74354616) | |
| 208-374, gnl|Hg17|chr11 (74354454-74354620) | |
| 208-374, gnl|loxAfr1|scaffold_118100 (4033-4199) | |
| 208-374, gnl|mm7|chr7 (95879264-95879098) | |
| 208-374, gnl|Mm7|chr7 (95879258-95879092) | |
| 208-374, gnl|monDom2|scaffold_74 (2195731-2195565) | |
| 208-374, gnl|oryCun1|scaffold_174138 (44723-44880) | |
| 208-374, gnl|panTro1|chr9 (75642091-75642257) | |
| 208-374, gnl|rheMac2|chr14 (73134357-73134523) | |
| 208-374, gnl|rn3|chr1 (157285345-157285179) | |
| 208-374, gnl|tetNig1|chrUn_random (135718915-135719081) | |
| 504-1405, gnl|bosTau2|chr8 (11671331-11672223) | |
| 504-1405, gnl|Hg17|chr11 (74365548-74366434) | |
| 504-1405, gnl|Mm7|chr7 (95870682-95869698) | |
| 1194-1394, gnl|bosTau2|chr23 (22414991-22414804) | |
| 1194-1394, gnl|Hg17|chr1 (28105891-28105709) | |
| 1194-1394, gnl|Mm7|chr2 (129118465-129118270) |
| Expressed library(ies): 66 entry(ies) | More info |
| Expressed library(ies): 66 entry(ies) | Help | Less info |
| spl (1.71821) | |
| pro (1.02407) | |
| vin (0.997672) | |
| sin (0.874738) | |
| kid (0.778412) | |
| liv (0.731422) | |
| sag (0.730861) | |
| fhi (0.678311) | |
| sug (0.636456) | |
| hea (0.613497) | |
| lun (0.601956) | |
| col (0.585023) | |
| lin (0.582411) | |
| nje (0.49776) | |
| tra (0.492368) | |
| clu (0.478583) | |
| fco (0.471624) | |
| isp (0.451128) | |
| amn (0.417711) | |
| ssp (0.406559) | |
| fcc (0.39557) | |
| ova (0.387397) | |
| ret (0.3862) | |
| nlu (0.383362) | |
| thg (0.380373) | |
| eru (0.360144) | |
| pgl (0.35545) | |
| fty (0.351679) | |
| duo (0.345602) | |
| eye (0.341006) | |
| cki (0.330469) | |
| nco (0.323468) | |
| tbr (0.308356) | |
| eli (0.303628) | |
| fat (0.294855) | |
| ski (0.29347) | |
| ldo (0.291008) | |
| lyg (0.266205) | |
| ute (0.265569) | |
| bla (0.248694) | |
| pan (0.23596) | |
| mas (0.210305) | |
| cty (0.20816) | |
| tes (0.207814) | |
| fli (0.202881) | |
| eje (0.197668) | |
| aor (0.195274) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| cje (0.165235) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| csk (0.140746) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eep (0.122564) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) |
| Expressed library(ies): 66 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (1.71821) | |
| pro (1.02407) | |
| vin (0.997672) | |
| sin (0.874738) | |
| kid (0.778412) | |
| liv (0.731422) | |
| sag (0.730861) | |
| fhi (0.678311) | |
| sug (0.636456) | |
| hea (0.613497) | |
| lun (0.601956) | |
| col (0.585023) | |
| lin (0.582411) | |
| nje (0.49776) | |
| tra (0.492368) | |
| clu (0.478583) | |
| fco (0.471624) | |
| isp (0.451128) | |
| amn (0.417711) | |
| ssp (0.406559) | |
| fcc (0.39557) | |
| ova (0.387397) | |
| ret (0.3862) | |
| nlu (0.383362) | |
| thg (0.380373) | |
| eru (0.360144) | |
| pgl (0.35545) | |
| fty (0.351679) | |
| duo (0.345602) | |
| eye (0.341006) | |
| cki (0.330469) | |
| nco (0.323468) | |
| tbr (0.308356) | |
| eli (0.303628) | |
| fat (0.294855) | |
| ski (0.29347) | |
| ldo (0.291008) | |
| lyg (0.266205) | |
| ute (0.265569) | |
| bla (0.248694) | |
| pan (0.23596) | |
| mas (0.210305) | |
| cty (0.20816) | |
| tes (0.207814) | |
| fli (0.202881) | |
| eje (0.197668) | |
| aor (0.195274) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| cje (0.165235) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| csk (0.140746) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eep (0.122564) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) |