Ss1.1-Liv1-LVR010043D07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTTTTGTTCCGGGGCCGCAGGGCGGGGCAGGCCCAACTTTTCGCTGCCTCCTGGTCTAC CCTCCAGAACGGCCATGATTTCCCAGTTCTTCATTCTGTCCTCCAAGGGGGACCCGCTCA TCTACAAGGACTTCCGCGGAGACAGCGGCGGCCGGGATGTGGCAGAGCTCTTCTACCGGA AGCTGACGGGACTGCCCGGAGACGAGTCTCCTGTTGTCATGCACCACGATGACCGTCATT TTATTCACATCAGACACAACGGCCTCTATTTGGTGGCCACGACTTCAGAGAACATTTCTC CCTTCAGCCTCCTAGAGCTGCTCTCCCGGCTAGCCACTCTCCTGGGAGATTACTGTGGCT CCCTGGGCGAGGGGACCATCTCCCGCAACGTGGCTCTGGTCTACGAACTCCTGGATGAAG TGCTGGACTATGGCTACGTACAGACCACATCCATGGAGATGCTGAGGAACTTCATCCAGA CGGAGGCCGTGGTCAGCAAGCCCTTCAGCCTCTTTGACCTCAGCAGTGTTGGCTTGTTTG GGGCCGAGACACAACAGAGCAAAGTGGCCCCCAGCAGTGCAGCCAGCCGCCCTGTCCTGT CCAGCCGCTCTGACCAGAGCCAAAAGAACGAAGTGTTCTTGGACGTGGTCGAGAGACTGT CCGTACTGATAGCCTCTAACGGCTCGCTGCTGAAGGTGGACGTGCAGGGAGAGATCCGAC TCAAGAGCTTTCTGCCCAGCGGCTCCGAGATGCGCATTGGCTTGACGGAAGAGTTTTGTG TGGGGAAGTCAGAACTGAGAGGTTATGGGCCAGGAATTCGGGTGGATGAGGTCTCATTTC ACAGCTCAGTGCATCTGGATGAGTTTGAATCTCATCGAATCCTCCGCCTGCAGCCCCCTC AGGGTGAGCTGACGGTGATGCGCTACCAGCTCTCAGATGACCTCCCCTCCCCGCTCCCAT TCCGGCTCTTTCCCTCTGTGCAGTGGGACCGAGGCTCTGGCAGGCTCCAGGTTTATCTGA AGTTACGTTGTGACCTGCCCCCAAAGAGCCAGGCTCTCAACGTCAGGCTGCACCTTCCTC TGCCGCGAGGGGTGGTCAGCCTCTCTCAGGAGCTGAGCAGCCCAGAGCAGAAGGCAGAAC TGAGGGAGGGAGCCCTTCGCTGGGACCTGCCCCGGGTGCAGGGAGGCTCGCAGCTCTCAG GCCTCTTCCAGATGGATGTCCCGGGCATTCCTGGGCCTCCCGGCCCAGGGCCCTCCGGCG CGGCTCCTCTGGGGCTGGGCCCTGCCAGCCTCTCCTTCGAACTTCCCCGGCACACGTGCT CCGGCCTCCAGGTTCGCTTCCTCAGGCTGCCGTTCAGACCCTGCGGCAACGCCAACCCCC ACAAGTGGGTGCGACACCTAAGCCACAGTGATGCCTACGTCATTCGGATCTGAGGCTCCC GAATAAGGACTCAGGCGGCAAGAGCGGGTCTGTGTAGCAGAAGGACGATGTTTTCTCCTC CAGTGTCCTGGCCTCTTGCTGTGGGTGTGGCTCGAAGAGTCCTGTGTCCTAGAGACTAAG GGAGCTCGGTGGGTTCAACCCTCCTGTGGGATCTGCCCTGGGAAGGACTGGGGGACCACA CCTTAAAAATGAAACTTTTATTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTTTTGTTCCGGGGCCGCAGGGCGGGGCAGGCCCAACTTTTCGCTGCCTCCTGGTCTAC CCTCCAGAACGGCCATGATTTCCCAGTTCTTCATTCTGTCCTCCAAGGGGGACCCGCTCA TCTACAAGGACTTCCGCGGAGACAGCGGCGGCCGGGATGTGGCAGAGCTCTTCTACCGGA AGCTGACGGGACTGCCCGGAGACGAGTCTCCTGTTGTCATGCACCACGATGACCGTCATT TTATTCACATCAGACACAACGGCCTCTATTTGGTGGCCACGACTTCAGAGAACATTTCTC CCTTCAGCCTCCTAGAGCTGCTCTCCCGGCTAGCCACTCTCCTGGGAGATTACTGTGGCT CCCTGGGCGAGGGGACCATCTCCCGCAACGTGGCTCTGGTCTACGAACTCCTGGATGAAG TGCTGGACTATGGCTACGTACAGACCACATCCATGGAGATGCTGAGGAACTTCATCCAGA CGGAGGCCGTGGTCAGCAAGCCCTTCAGCCTCTTTGACCTCAGCAGTGTTGGCTTGTTTG GGGCCGAGACACAACAGAGCAAAGTGGCCCCCAGCAGTGCAGCCAGCCGCCCTGTCCTGT CCAGCCGCTCTGACCAGAGCCAAAAGAACGAAGTGTTCTTGGACGTGGTCGAGAGACTGT CCGTACTGATAGCCTCTAACGGCTCGCTGCTGAAGGTGGACGTGCAGGGAGAGATCCGAC TCAAGAGCTTTCTGCCCAGCGGCTCCGAGATGCGCATTGGCTTGACGGAAGAGTTTTGTG TGGGGAAGTCAGAACTGAGAGGTTATGGGCCAGGAATTCGGGTGGATGAGGTCTCATTTC ACAGCTCAGTGCATCTGGATGAGTTTGAATCTCATCGAATCCTCCGCCTGCAGCCCCCTC AGGGTGAGCTGACGGTGATGCGCTACCAGCTCTCAGATGACCTCCCCTCCCCGCTCCCAT TCCGGCTCTTTCCCTCTGTGCAGTGGGACCGAGGCTCTGGCAGGCTCCAGGTTTATCTGA AGTTACGTTGTGACCTGCCCCCAAAGAGCCAGGCTCTCAACGTCAGGCTGCACCTTCCTC TGCCGCGAGGGGTGGTCAGCCTCTCTCAGGAGCTGAGCAGCCCAGAGCAGAAGGCAGAAC TGAGGGAGGGAGCCCTTCGCTGGGACCTGCCCCGGGTGCAGGGAGGCTCGCAGCTCTCAG GCCTCTTCCAGATGGATGTCCCGGGCATTCCTGGGCCTCCCGGCCCAGGGCCCTCCGGCG CGGCTCCTCTGGGGCTGGGCCCTGCCAGCCTCTCCTTCGAACTTCCCCGGCACACGTGCT CCGGCCTCCAGGTTCGCTTCCTCAGGCTGCCGTTCAGACCCTGCGGCAACGCCAACCCCC ACAAGTGGGTGCGACACCTAAGCCACAGTGATGCCTACGTCATTCGGATCTGAGGCTCCC GAATAAGGACTCAGGCGGCAAGAGCGGGTCTGTGTAGCAGAAGGACGATGTTTTCTCCTC CAGTGTCCTGGCCTCTTGCTGTGGGTGTGGCTCGAAGAGTCCTGTGTCCTAGAGACTAAG GGAGCTCGGTGGGTTCAACCCTCCTGTGGGATCTGCCCTGGGAAGGACTGGGGGACCACA CCTTAAAAATGAAACTTTTATTCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1202-1437, - strand, RNAz p=0.986622 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1202-1437, - strand, RNAz p=0.986622 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-156, gnl|bosTau2|chr25 (33184380-33184534) | |
| 1-156, gnl|Hg17|chr7 (99343916-99344075) | |
| 1-156, gnl|Mm7|chr5 (137117640-137117794) | |
| 221-329, gnl|bosTau2|chr25 (33185088-33185196) | |
| 221-329, gnl|canFam2|chr6 (12498418-12498291) | |
| 221-329, gnl|danRer3|chr10 (15306622-15306727) | |
| 221-329, gnl|dasNov1|scaffold_41458 (8040-7919) | |
| 221-329, gnl|echTel1|scaffold_294936 (45076-45200) | |
| 221-329, gnl|fr1|chrUn (146830704-146830834) | |
| 221-329, gnl|hg17|chr7 (99344928-99345058) | |
| 221-329, gnl|Hg17|chr7 (99344948-99345056) | |
| 221-329, gnl|mm7|chr5 (137118291-137118418) | |
| 221-329, gnl|Mm7|chr5 (137118308-137118416) | |
| 221-329, gnl|monDom2|scaffold_66 (1981932-1982053) | |
| 221-329, gnl|oryCun1|scaffold_189975 (2684-2554) | |
| 221-329, gnl|panTro1|chr6 (101128063-101128193) | |
| 221-329, gnl|rheMac2|chr3 (47381512-47381642) | |
| 221-329, gnl|rn3|chr12 (17605128-17605255) | |
| 221-329, gnl|tetNig1|chr7 (9972821-9972950) | |
| 800-908, gnl|bosTau2|chr25 (33186484-33186592) | |
| 800-908, gnl|canFam2|chr6 (12496969-12496858) | |
| 800-908, gnl|danRer3|chr10 (15309487-15309598) | |
| 800-908, gnl|dasNov1|scaffold_41458 (6555-6444) | |
| 800-908, gnl|echTel1|scaffold_294936 (47113-47224) | |
| 800-908, gnl|fr1|chrUn (146833183-146833294) | |
| 800-908, gnl|hg17|chr7 (99347512-99347623) | |
| 800-908, gnl|Hg17|chr7 (99347512-99347620) | |
| 800-908, gnl|loxAfr1|scaffold_121435 (1347-1236) | |
| 800-908, gnl|mm7|chr5 (137122135-137122246) | |
| 800-908, gnl|Mm7|chr5 (137122135-137122243) | |
| 800-908, gnl|monDom2|scaffold_66 (1987525-1987636) | |
| 800-908, gnl|oryCun1|scaffold_189975 (1086-974) | |
| 800-908, gnl|panTro1|chr6 (101130678-101130789) | |
| 800-908, gnl|rheMac2|chr3 (47384365-47384476) | |
| 800-908, gnl|rn3|chr12 (17608439-17608550) | |
| 800-908, gnl|tetNig1|chr7 (9975044-9975153) | |
| 800-908, gnl|xenTro1|scaffold_814 (541479-541589) | |
| 1202-1644, gnl|bosTau2|chr25 (33187817-33188255) | |
| 1202-1644, gnl|Hg17|chr7 (99348922-99349372) | |
| 1202-1644, gnl|Mm7|chr5 (137123792-137124166) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-156, gnl|bosTau2|chr25 (33184380-33184534) | |
| 1-156, gnl|Hg17|chr7 (99343916-99344075) | |
| 1-156, gnl|Mm7|chr5 (137117640-137117794) | |
| 221-329, gnl|bosTau2|chr25 (33185088-33185196) | |
| 221-329, gnl|canFam2|chr6 (12498418-12498291) | |
| 221-329, gnl|danRer3|chr10 (15306622-15306727) | |
| 221-329, gnl|dasNov1|scaffold_41458 (8040-7919) | |
| 221-329, gnl|echTel1|scaffold_294936 (45076-45200) | |
| 221-329, gnl|fr1|chrUn (146830704-146830834) | |
| 221-329, gnl|hg17|chr7 (99344928-99345058) | |
| 221-329, gnl|Hg17|chr7 (99344948-99345056) | |
| 221-329, gnl|mm7|chr5 (137118291-137118418) | |
| 221-329, gnl|Mm7|chr5 (137118308-137118416) | |
| 221-329, gnl|monDom2|scaffold_66 (1981932-1982053) | |
| 221-329, gnl|oryCun1|scaffold_189975 (2684-2554) | |
| 221-329, gnl|panTro1|chr6 (101128063-101128193) | |
| 221-329, gnl|rheMac2|chr3 (47381512-47381642) | |
| 221-329, gnl|rn3|chr12 (17605128-17605255) | |
| 221-329, gnl|tetNig1|chr7 (9972821-9972950) | |
| 800-908, gnl|bosTau2|chr25 (33186484-33186592) | |
| 800-908, gnl|canFam2|chr6 (12496969-12496858) | |
| 800-908, gnl|danRer3|chr10 (15309487-15309598) | |
| 800-908, gnl|dasNov1|scaffold_41458 (6555-6444) | |
| 800-908, gnl|echTel1|scaffold_294936 (47113-47224) | |
| 800-908, gnl|fr1|chrUn (146833183-146833294) | |
| 800-908, gnl|hg17|chr7 (99347512-99347623) | |
| 800-908, gnl|Hg17|chr7 (99347512-99347620) | |
| 800-908, gnl|loxAfr1|scaffold_121435 (1347-1236) | |
| 800-908, gnl|mm7|chr5 (137122135-137122246) | |
| 800-908, gnl|Mm7|chr5 (137122135-137122243) | |
| 800-908, gnl|monDom2|scaffold_66 (1987525-1987636) | |
| 800-908, gnl|oryCun1|scaffold_189975 (1086-974) | |
| 800-908, gnl|panTro1|chr6 (101130678-101130789) | |
| 800-908, gnl|rheMac2|chr3 (47384365-47384476) | |
| 800-908, gnl|rn3|chr12 (17608439-17608550) | |
| 800-908, gnl|tetNig1|chr7 (9975044-9975153) | |
| 800-908, gnl|xenTro1|scaffold_814 (541479-541589) | |
| 1202-1644, gnl|bosTau2|chr25 (33187817-33188255) | |
| 1202-1644, gnl|Hg17|chr7 (99348922-99349372) | |
| 1202-1644, gnl|Mm7|chr5 (137123792-137124166) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| eep (0.367692) | |
| mcp (0.170648) | |
| cag (0.151194) | |
| pla (0.133672) | |
| ebs (0.118301) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.367692) | |
| mcp (0.170648) | |
| cag (0.151194) | |
| pla (0.133672) | |
| ebs (0.118301) |