Ss1.1-Liv1-LVR010043F01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCGGCGCACGTGTGAAACTGGGGAGCCCATGGAGGCTGAGTCCCACGATGCAGGGTCC GAGGGCCCTCCCCAGGTCTACCTACCGGGCCGGGGACCGCCACTGCGTGAGGGAGAGGAG CTGGTCATGGACGAGGAGGCCTACGTGCTGTACCACCGAGCACAGACTGGCGCCCCCTGC CTCAGCTTCGACATAGTCCGGGATCACCTGGGAGACAACCGGACTGAGCTTCCTCTTACA CTTTACCTGTGTGCTGGAACCCAGGCAGAGAGCGCCCAAAGCAACAGATTGATGATGCTT CGAATGCACAATTTGCATGGGACAAAGCCCCCGCCATCAGAGGGCAGTGATGAAGAGGAG GAGGAGGATGAAGAGGATGAAGAAGAGCGAAAGCCTCAGCTAGAGTTGGCTATGGTGCCG CACTATGGTGGCATCAACAGAGTTCGGGTGTCGTGGCTGGGTGAGGAGCCGGTGGCCGGG GTGTGGTCAGAGAAGGGCCAGGTAGAGGTGTTTGCACTGCGGCGGCTCCTGCAGGTGGTG GATGACCCCCAGGCCCTGGCCACTTTCCTCCGAGATGAGCAGGCCCGCGTGAAGCCCATC TTCGCCTTCTCTGGCCACATGGGCGAGGGCTTTGCACTTGACTGGTCCCCTCGAGTGCCT GGGCGCCTGCTGACCGGGGACTGTCAGAAGAACATCCACCTCTGGACACCTACGGACAGT GGCTCCTGGCACGTGGACCAGCGGCCGTTTGTGGGCCACACACGCTCCGTGGAGGACCTG CAGTGGTCCCCAACAGAGGACACGGTATTTGCCTCCTGCTCGGCCGACGCTTCCATTCGC ATCTGGGACATCCGGGCGGCGCCCAGCAGGGCCTGCATGCTCACCACCCCCGCCGCCCAC AACGGGGATGTCAACGTCATCAGCTGGAGCCGGCAGGAGCCCTTTCTGCTCAGTGGCGGG GACGACGGAGCCCTCAAGGTCTGGGACTTGCGGCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCGGCGCACGTGTGAAACTGGGGAGCCCATGGAGGCTGAGTCCCACGATGCAGGGTCC GAGGGCCCTCCCCAGGTCTACCTACCGGGCCGGGGACCGCCACTGCGTGAGGGAGAGGAG CTGGTCATGGACGAGGAGGCCTACGTGCTGTACCACCGAGCACAGACTGGCGCCCCCTGC CTCAGCTTCGACATAGTCCGGGATCACCTGGGAGACAACCGGACTGAGCTTCCTCTTACA CTTTACCTGTGTGCTGGAACCCAGGCAGAGAGCGCCCAAAGCAACAGATTGATGATGCTT CGAATGCACAATTTGCATGGGACAAAGCCCCCGCCATCAGAGGGCAGTGATGAAGAGGAG GAGGAGGATGAAGAGGATGAAGAAGAGCGAAAGCCTCAGCTAGAGTTGGCTATGGTGCCG CACTATGGTGGCATCAACAGAGTTCGGGTGTCGTGGCTGGGTGAGGAGCCGGTGGCCGGG GTGTGGTCAGAGAAGGGCCAGGTAGAGGTGTTTGCACTGCGGCGGCTCCTGCAGGTGGTG GATGACCCCCAGGCCCTGGCCACTTTCCTCCGAGATGAGCAGGCCCGCGTGAAGCCCATC TTCGCCTTCTCTGGCCACATGGGCGAGGGCTTTGCACTTGACTGGTCCCCTCGAGTGCCT GGGCGCCTGCTGACCGGGGACTGTCAGAAGAACATCCACCTCTGGACACCTACGGACAGT GGCTCCTGGCACGTGGACCAGCGGCCGTTTGTGGGCCACACACGCTCCGTGGAGGACCTG CAGTGGTCCCCAACAGAGGACACGGTATTTGCCTCCTGCTCGGCCGACGCTTCCATTCGC ATCTGGGACATCCGGGCGGCGCCCAGCAGGGCCTGCATGCTCACCACCCCCGCCGCCCAC AACGGGGATGTCAACGTCATCAGCTGGAGCCGGCAGGAGCCCTTTCTGCTCAGTGGCGGG GACGACGGAGCCCTCAAGGTCTGGGACTTGCGGCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 447-565, + strand, RNAz p=0.529968 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 447-565, + strand, RNAz p=0.529968 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-170, gnl|bosTau2|chr18 (50370426-50370257) | |
| 1-170, gnl|canFam2|chr1 (110706746-110706521) | |
| 1-170, gnl|danRer3|chr3 (21523921-21524158) | |
| 1-170, gnl|dasNov1|scaffold_106007 (6652-6890) | |
| 1-170, gnl|echTel1|scaffold_113092 (850-1089) | |
| 1-170, gnl|fr1|chrUn (252641117-252641330) | |
| 1-170, gnl|hg17|chr19 (53641072-53641279) | |
| 1-170, gnl|Hg17|chr19 (53641093-53641262) | |
| 1-170, gnl|loxAfr1|scaffold_92279 (1428-1200) | |
| 1-170, gnl|mm7|chr7 (42007020-42006812) | |
| 1-170, gnl|Mm7|chr7 (42006997-42006828) | |
| 1-170, gnl|oryCun1|scaffold_190529 (2416-2624) | |
| 1-170, gnl|panTro1|chr20 (51016301-51016508) | |
| 1-170, gnl|rheMac2|chr19 (54745151-54745358) | |
| 1-170, gnl|rn3|chr1 (96385206-96384998) | |
| 1-170, gnl|xenTro1|scaffold_70 (681984-681776) | |
| 447-662, gnl|bosTau2|chr18 (50367506-50367291) | |
| 447-662, gnl|Hg17|chr19 (53645381-53645596) | |
| 447-662, gnl|Mm7|chr7 (42004228-42004013) | |
| 804-996, gnl|bosTau2|chr18 (50366893-50366701) | |
| 804-996, gnl|canFam2|chr1 (110702928-110702773) | |
| 804-996, gnl|danRer3|chr3 (21531760-21531904) | |
| 804-996, gnl|fr1|chrUn (252644398-252644547) | |
| 804-996, gnl|hg17|chr19 (53646090-53646245) | |
| 804-996, gnl|Hg17|chr19 (53646102-53646294) | |
| 804-996, gnl|loxAfr1|scaffold_61866 (31373-31255) | |
| 804-996, gnl|mm7|chr7 (42003587-42003432) | |
| 804-996, gnl|Mm7|chr7 (42003573-42003381) | |
| 804-996, gnl|oryCun1|scaffold_158053 (5275-5120) | |
| 804-996, gnl|panTro1|chr20 (51021309-51021464) | |
| 804-996, gnl|rheMac2|chr19 (54750486-54750641) | |
| 804-996, gnl|rn3|chr1 (96381729-96381574) | |
| 804-996, gnl|tetNig1|chr8 (8479102-8479251) | |
| 804-996, gnl|xenTro1|scaffold_70 (677947-677804) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-170, gnl|bosTau2|chr18 (50370426-50370257) | |
| 1-170, gnl|canFam2|chr1 (110706746-110706521) | |
| 1-170, gnl|danRer3|chr3 (21523921-21524158) | |
| 1-170, gnl|dasNov1|scaffold_106007 (6652-6890) | |
| 1-170, gnl|echTel1|scaffold_113092 (850-1089) | |
| 1-170, gnl|fr1|chrUn (252641117-252641330) | |
| 1-170, gnl|hg17|chr19 (53641072-53641279) | |
| 1-170, gnl|Hg17|chr19 (53641093-53641262) | |
| 1-170, gnl|loxAfr1|scaffold_92279 (1428-1200) | |
| 1-170, gnl|mm7|chr7 (42007020-42006812) | |
| 1-170, gnl|Mm7|chr7 (42006997-42006828) | |
| 1-170, gnl|oryCun1|scaffold_190529 (2416-2624) | |
| 1-170, gnl|panTro1|chr20 (51016301-51016508) | |
| 1-170, gnl|rheMac2|chr19 (54745151-54745358) | |
| 1-170, gnl|rn3|chr1 (96385206-96384998) | |
| 1-170, gnl|xenTro1|scaffold_70 (681984-681776) | |
| 447-662, gnl|bosTau2|chr18 (50367506-50367291) | |
| 447-662, gnl|Hg17|chr19 (53645381-53645596) | |
| 447-662, gnl|Mm7|chr7 (42004228-42004013) | |
| 804-996, gnl|bosTau2|chr18 (50366893-50366701) | |
| 804-996, gnl|canFam2|chr1 (110702928-110702773) | |
| 804-996, gnl|danRer3|chr3 (21531760-21531904) | |
| 804-996, gnl|fr1|chrUn (252644398-252644547) | |
| 804-996, gnl|hg17|chr19 (53646090-53646245) | |
| 804-996, gnl|Hg17|chr19 (53646102-53646294) | |
| 804-996, gnl|loxAfr1|scaffold_61866 (31373-31255) | |
| 804-996, gnl|mm7|chr7 (42003587-42003432) | |
| 804-996, gnl|Mm7|chr7 (42003573-42003381) | |
| 804-996, gnl|oryCun1|scaffold_158053 (5275-5120) | |
| 804-996, gnl|panTro1|chr20 (51021309-51021464) | |
| 804-996, gnl|rheMac2|chr19 (54750486-54750641) | |
| 804-996, gnl|rn3|chr1 (96381729-96381574) | |
| 804-996, gnl|tetNig1|chr8 (8479102-8479251) | |
| 804-996, gnl|xenTro1|scaffold_70 (677947-677804) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) |