Non-Coding RNA Search

Ss1.1-Liv1-LVR010044A09.5

Sequence:


               
               ATCTAGCGGATGTAAAGAAGAAAGGCAGAATGAAGAAGCTTAGCCAAGCAGCCGAGCAAG
ACCTAATCGTGGGGCTCCAAGGGCTGGATCTGAACCTGGAGGCCAGGACACCGTCTGGCA
CTGGCTTGGTGTTGGATGAGCAGCTAAATGAATTCCACTGCCTCTGGGATGACAGCTTCC
CTGAAGGCCCTGAGCGGCTCCATGCCATCAAGGAGCAGCTGATGCAGGAGGGCCTCCTGG
TTGTGGAGCCAAGGGCCCCAGTTACTCAGTGGGTTAAGGATCCAGCGTTGCCATGAGCTG
TGGTGTAGGTTGCAGACAGGGCTTGGATCCCGCGTTGCTCTGGCCAGAAGCTGCAGCTCC
GCTTGGACCCCTAGCCTGGGACCTGTGCAGGCATTGGCACTGGGGACGTTCGTGGTGTAG
GATTAGGGAGCCGGAAAGAGTCCCTCTCTGCTGAGGAGGACCCCCTCATATCTATGGCCT
TCCCTGTCCTACCCAGGCCTCCTGGACACCACGCCCAGCACAGTCTTATGGACGGGTATT
GCATGTTCAACCACGTAGCCTTGGCCGCCCGCTACGCTCAGCAGAAGCATGACGTTCAGA
GGGTCCTTATTGTGGATTGGGATGTGCACCATGGTCAGGGAACACAGTTCACCTTTGACC
AAGACCCCAGCGTCCTCTATTTCTCCATCCACCGCTATGAGCAGGGTCGGTTCTGGCCCC
ACCTTAAGGCCTCTAATTGGTCCACCACGGGTTTTGGCCAAGGCCAGGGATACACCATCA
ATGTGCCTTGGAACCAGGTGGGGATGCGAGATGCCGACTACATTGCTGCTTTCCTGCACC
TCCTGCTGCCAGTCGCCCTTGAGTTCCAGCCCCAGCTGGTCCTGGTAGCCGCTGGCTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTAGCGGATGTAAAGAAGAAAGGCAGAATGAAGAAGCTTAGCCAAGCAGCCGAGCAAG
ACCTAATCGTGGGGCTCCAAGGGCTGGATCTGAACCTGGAGGCCAGGACACCGTCTGGCA
CTGGCTTGGTGTTGGATGAGCAGCTAAATGAATTCCACTGCCTCTGGGATGACAGCTTCC
CTGAAGGCCCTGAGCGGCTCCATGCCATCAAGGAGCAGCTGATGCAGGAGGGCCTCCTGG
TTGTGGAGCCAAGGGCCCCAGTTACTCAGTGGGTTAAGGATCCAGCGTTGCCATGAGCTG
TGGTGTAGGTTGCAGACAGGGCTTGGATCCCGCGTTGCTCTGGCCAGAAGCTGCAGCTCC
GCTTGGACCCCTAGCCTGGGACCTGTGCAGGCATTGGCACTGGGGACGTTCGTGGTGTAG
GATTAGGGAGCCGGAAAGAGTCCCTCTCTGCTGAGGAGGACCCCCTCATATCTATGGCCT
TCCCTGTCCTACCCAGGCCTCCTGGACACCACGCCCAGCACAGTCTTATGGACGGGTATT
GCATGTTCAACCACGTAGCCTTGGCCGCCCGCTACGCTCAGCAGAAGCATGACGTTCAGA
GGGTCCTTATTGTGGATTGGGATGTGCACCATGGTCAGGGAACACAGTTCACCTTTGACC
AAGACCCCAGCGTCCTCTATTTCTCCATCCACCGCTATGAGCAGGGTCGGTTCTGGCCCC
ACCTTAAGGCCTCTAATTGGTCCACCACGGGTTTTGGCCAAGGCCAGGGATACACCATCA
ATGTGCCTTGGAACCAGGTGGGGATGCGAGATGCCGACTACATTGCTGCTTTCCTGCACC
TCCTGCTGCCAGTCGCCCTTGAGTTCCAGCCCCAGCTGGTCCTGGTAGCCGCTGGCTTTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61867110|ref|XP_597368.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61867110|ref|XP_597368.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               414-526, - strand, RNAz p=0.744464
               

               
               682-799, - strand, RNAz p=0.51329

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               414-526, - strand, RNAz p=0.744464
               

               
               682-799, - strand, RNAz p=0.51329

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               375-602, gnl|bosTau2|chrX (26313796-26313565)
               

               
               375-602, gnl|Hg17|chrX (48422561-48422794)
               

               
               375-602, gnl|Mm7|chrX (6375391-6375182)
               


               
               667-799, gnl|bosTau2|chrX (26309922-26309790)
               

               
               667-799, gnl|canFam2|chrX (41966276-41966423)
               

               
               667-799, gnl|danRer3|chrNA (98108235-98108377)
               

               
               667-799, gnl|echTel1|scaffold_162194 (1000-1168)
               

               
               667-799, gnl|fr1|chrUn (244293924-244293785)
               

               
               667-799, gnl|hg17|chrX (48429087-48429234)
               

               
               667-799, gnl|Hg17|chrX (48429092-48429224)
               

               
               667-799, gnl|mm7|chrX (6373205-6373058)
               

               
               667-799, gnl|Mm7|chrX (6373198-6373066)
               

               
               667-799, gnl|monDom2|scaffold_134 (320067-320211)
               

               
               667-799, gnl|oryCun1|scaffold_180674 (7746-7599)
               

               
               667-799, gnl|panTro1|chrX (49755292-49755439)
               

               
               667-799, gnl|rheMac2|chrX (46679942-46680089)
               

               
               667-799, gnl|rn3|chrX (26650673-26650820)
               

               
               667-799, gnl|tetNig1|chr13 (9029176-9029323)
               

               
               667-799, gnl|xenTro1|scaffold_2145 (9241-9089)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               375-602, gnl|bosTau2|chrX (26313796-26313565)
               

               
               375-602, gnl|Hg17|chrX (48422561-48422794)
               

               
               375-602, gnl|Mm7|chrX (6375391-6375182)
               


               
               667-799, gnl|bosTau2|chrX (26309922-26309790)
               

               
               667-799, gnl|canFam2|chrX (41966276-41966423)
               

               
               667-799, gnl|danRer3|chrNA (98108235-98108377)
               

               
               667-799, gnl|echTel1|scaffold_162194 (1000-1168)
               

               
               667-799, gnl|fr1|chrUn (244293924-244293785)
               

               
               667-799, gnl|hg17|chrX (48429087-48429234)
               

               
               667-799, gnl|Hg17|chrX (48429092-48429224)
               

               
               667-799, gnl|mm7|chrX (6373205-6373058)
               

               
               667-799, gnl|Mm7|chrX (6373198-6373066)
               

               
               667-799, gnl|monDom2|scaffold_134 (320067-320211)
               

               
               667-799, gnl|oryCun1|scaffold_180674 (7746-7599)
               

               
               667-799, gnl|panTro1|chrX (49755292-49755439)
               

               
               667-799, gnl|rheMac2|chrX (46679942-46680089)
               

               
               667-799, gnl|rn3|chrX (26650673-26650820)
               

               
               667-799, gnl|tetNig1|chr13 (9029176-9029323)
               

               
               667-799, gnl|xenTro1|scaffold_2145 (9241-9089)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cbr (1.79166)
               

               
               eje (0.197668)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (1.79166)
               

               
               eje (0.197668)

	414-526, - strand, RNAz p=0.744464
	682-799, - strand, RNAz p=0.51329

	375-602, gnl\|bosTau2\|chrX (26313796-26313565)
	375-602, gnl\|Hg17\|chrX (48422561-48422794)
	375-602, gnl\|Mm7\|chrX (6375391-6375182)

	667-799, gnl\|bosTau2\|chrX (26309922-26309790)
	667-799, gnl\|canFam2\|chrX (41966276-41966423)
	667-799, gnl\|danRer3\|chrNA (98108235-98108377)
	667-799, gnl\|echTel1\|scaffold_162194 (1000-1168)
	667-799, gnl\|fr1\|chrUn (244293924-244293785)
	667-799, gnl\|hg17\|chrX (48429087-48429234)
	667-799, gnl\|Hg17\|chrX (48429092-48429224)
	667-799, gnl\|mm7\|chrX (6373205-6373058)
	667-799, gnl\|Mm7\|chrX (6373198-6373066)
	667-799, gnl\|monDom2\|scaffold_134 (320067-320211)
	667-799, gnl\|oryCun1\|scaffold_180674 (7746-7599)
	667-799, gnl\|panTro1\|chrX (49755292-49755439)
	667-799, gnl\|rheMac2\|chrX (46679942-46680089)
	667-799, gnl\|rn3\|chrX (26650673-26650820)
	667-799, gnl\|tetNig1\|chr13 (9029176-9029323)
	667-799, gnl\|xenTro1\|scaffold_2145 (9241-9089)