Non-Coding RNA Search

Ss1.1-Liv1-LVR010044A11.5

Sequence:


               
               CATTTCCGTCCGCGGAGAAACGGAGAAAGCTGCAAGGCGAGTTGCGGGCCAGGCGCCTCG
GGCGGGATTTCCTTGGTTGGAAGTGGCCGGCTTCCAGGATGGCCAAGGTGGAGGCCCGGG
GCCGCCTGTGGCTGGAGAGCCCCCCTGGGGGAGCACCTCCCATCTTCCTGCCCTCCGACG
GGCAAGCCCTGGTCCTGGGCCGGGGACCCTTGACTCTGGTTACCGACCGGAAATGCTCCC
GAAACCAAGTGGAGCTGGTTGCAGACCCTGAGACTCGGACCGTGGCAGTGAAACAGCTAG
GAGTTAACCCCTCAACTGCTGGAGCCCAAGAGCTGAGGCCGGGGTTGGAGGGCTCTCTAG
GGGTGGGGGACACGTTGTATTTGGTCAACGGCCTCCACCCGTTGACCCTGCGCTGGGAAG
AGGCTCGCACTCCAGAATTGCAGCCAGACACTCCACCTGGCACGCCTCCTGTGCCCCCAC
ACGAGGAGGAGGAAGAGGCTGAGCCGCCGAAAAAGCAGATGCGGAAGTCATCTCCTGGCT
GGGAGAGCTTTGAGAAGCTACTAGTATTCACAGCACCTGGTGTGAAGCCGCGGGGCAAGG
TAGCCAGTTTTGATCTCGATGGGACCCTCATCACCACACGATCTGGGAAGGTCTTTCCCA
CGGGCCCCAGCGACTGGAGGATCTTGTACCTGGAGATTCCGCGGAAGCTCCGGGAACTGG
ACGCGGAGGGTTACAAGCTGGTGATCTTCACCAACCAGATGGGCATTGGACGCGGGAAGC
TGCCAGCGGAGGAGTTCAAGGCCAAGGTGGAGGCTGTGGTGGAGAAGCTGGGGGTTCCCT
TTCAGGTGCTGGTGGCCACCCATGCGGGCCTGTACCGGAAGCCGGTGATCGGCATGTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTCCGTCCGCGGAGAAACGGAGAAAGCTGCAAGGCGAGTTGCGGGCCAGGCGCCTCG
GGCGGGATTTCCTTGGTTGGAAGTGGCCGGCTTCCAGGATGGCCAAGGTGGAGGCCCGGG
GCCGCCTGTGGCTGGAGAGCCCCCCTGGGGGAGCACCTCCCATCTTCCTGCCCTCCGACG
GGCAAGCCCTGGTCCTGGGCCGGGGACCCTTGACTCTGGTTACCGACCGGAAATGCTCCC
GAAACCAAGTGGAGCTGGTTGCAGACCCTGAGACTCGGACCGTGGCAGTGAAACAGCTAG
GAGTTAACCCCTCAACTGCTGGAGCCCAAGAGCTGAGGCCGGGGTTGGAGGGCTCTCTAG
GGGTGGGGGACACGTTGTATTTGGTCAACGGCCTCCACCCGTTGACCCTGCGCTGGGAAG
AGGCTCGCACTCCAGAATTGCAGCCAGACACTCCACCTGGCACGCCTCCTGTGCCCCCAC
ACGAGGAGGAGGAAGAGGCTGAGCCGCCGAAAAAGCAGATGCGGAAGTCATCTCCTGGCT
GGGAGAGCTTTGAGAAGCTACTAGTATTCACAGCACCTGGTGTGAAGCCGCGGGGCAAGG
TAGCCAGTTTTGATCTCGATGGGACCCTCATCACCACACGATCTGGGAAGGTCTTTCCCA
CGGGCCCCAGCGACTGGAGGATCTTGTACCTGGAGATTCCGCGGAAGCTCCGGGAACTGG
ACGCGGAGGGTTACAAGCTGGTGATCTTCACCAACCAGATGGGCATTGGACGCGGGAAGC
TGCCAGCGGAGGAGTTCAAGGCCAAGGTGGAGGCTGTGGTGGAGAAGCTGGGGGTTCCCT
TTCAGGTGCTGGTGGCCACCCATGCGGGCCTGTACCGGAAGCCGGTGATCGGCATGTGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61877493|ref|XP_584680.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61877493|ref|XP_584680.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               293-411, + strand, RNAz p=0.527873

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               293-411, + strand, RNAz p=0.527873

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               85-282, gnl|bosTau2|chr18 (48900776-48900583)
               

               
               85-282, gnl|Hg17|chr19 (55062287-55062102)
               

               
               85-282, gnl|Mm7|chr7 (41031914-41032097)
               


               
               293-601, gnl|bosTau2|chr18 (48899586-48899278)
               

               
               293-601, gnl|Hg17|chr19 (55060499-55060156)
               

               
               293-601, gnl|Mm7|chr7 (41032971-41033273)
               


               
               736-847, gnl|bosTau2|chr18 (48898605-48898494)
               

               
               736-847, gnl|canFam2|chr1 (109586662-109586516)
               

               
               736-847, gnl|echTel1|scaffold_315506 (42744-42896)
               

               
               736-847, gnl|fr1|chrUn (284511911-284512059)
               

               
               736-847, gnl|hg17|chr19 (55059032-55059173)
               

               
               736-847, gnl|Hg17|chr19 (55059142-55059031)
               

               
               736-847, gnl|loxAfr1|scaffold_173462 (1516-1374)
               

               
               736-847, gnl|mm7|chr7 (41034709-41034569)
               

               
               736-847, gnl|Mm7|chr7 (41034597-41034708)
               

               
               736-847, gnl|monDom2|scaffold_105 (3957791-3957643)
               

               
               736-847, gnl|panTro1|chr20 (52422485-52422626)
               

               
               736-847, gnl|rheMac2|chr19 (56143074-56143214)
               

               
               736-847, gnl|rn3|chr1 (95411533-95411392)
               

               
               736-847, gnl|tetNig1|chr16 (7930738-7930859)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-282, gnl|bosTau2|chr18 (48900776-48900583)
               

               
               85-282, gnl|Hg17|chr19 (55062287-55062102)
               

               
               85-282, gnl|Mm7|chr7 (41031914-41032097)
               


               
               293-601, gnl|bosTau2|chr18 (48899586-48899278)
               

               
               293-601, gnl|Hg17|chr19 (55060499-55060156)
               

               
               293-601, gnl|Mm7|chr7 (41032971-41033273)
               


               
               736-847, gnl|bosTau2|chr18 (48898605-48898494)
               

               
               736-847, gnl|canFam2|chr1 (109586662-109586516)
               

               
               736-847, gnl|echTel1|scaffold_315506 (42744-42896)
               

               
               736-847, gnl|fr1|chrUn (284511911-284512059)
               

               
               736-847, gnl|hg17|chr19 (55059032-55059173)
               

               
               736-847, gnl|Hg17|chr19 (55059142-55059031)
               

               
               736-847, gnl|loxAfr1|scaffold_173462 (1516-1374)
               

               
               736-847, gnl|mm7|chr7 (41034709-41034569)
               

               
               736-847, gnl|Mm7|chr7 (41034597-41034708)
               

               
               736-847, gnl|monDom2|scaffold_105 (3957791-3957643)
               

               
               736-847, gnl|panTro1|chr20 (52422485-52422626)
               

               
               736-847, gnl|rheMac2|chr19 (56143074-56143214)
               

               
               736-847, gnl|rn3|chr1 (95411533-95411392)
               

               
               736-847, gnl|tetNig1|chr16 (7930738-7930859)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	85-282, gnl\|bosTau2\|chr18 (48900776-48900583)
	85-282, gnl\|Hg17\|chr19 (55062287-55062102)
	85-282, gnl\|Mm7\|chr7 (41031914-41032097)

	293-601, gnl\|bosTau2\|chr18 (48899586-48899278)
	293-601, gnl\|Hg17\|chr19 (55060499-55060156)
	293-601, gnl\|Mm7\|chr7 (41032971-41033273)

	736-847, gnl\|bosTau2\|chr18 (48898605-48898494)
	736-847, gnl\|canFam2\|chr1 (109586662-109586516)
	736-847, gnl\|echTel1\|scaffold_315506 (42744-42896)
	736-847, gnl\|fr1\|chrUn (284511911-284512059)
	736-847, gnl\|hg17\|chr19 (55059032-55059173)
	736-847, gnl\|Hg17\|chr19 (55059142-55059031)
	736-847, gnl\|loxAfr1\|scaffold_173462 (1516-1374)
	736-847, gnl\|mm7\|chr7 (41034709-41034569)
	736-847, gnl\|Mm7\|chr7 (41034597-41034708)
	736-847, gnl\|monDom2\|scaffold_105 (3957791-3957643)
	736-847, gnl\|panTro1\|chr20 (52422485-52422626)
	736-847, gnl\|rheMac2\|chr19 (56143074-56143214)
	736-847, gnl\|rn3\|chr1 (95411533-95411392)
	736-847, gnl\|tetNig1\|chr16 (7930738-7930859)