Ss1.1-Liv1-LVR010044C07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGGGGCGGCGGAATTCGCGGAAGTGGGAGCGGAGCCCGAGTCTTGGCCATAAAGCCCGA GGCGGCGGCGGTGGCGGCGCTGGAAGCTTGGACAGGCTGAGGATCCCGCTGCAATCGGAA CTTGGACTTTCTTCCGCCCTCGTCTTCCCTCCGTCTCCTCCCCGGCAGACCCCTACCGAC ACGCCTGGCCCGGAGCCCAGCGGAGCGGCCGCGTTTGAAGGATGACCTCTAGGAAGAAAG TGTTGCTGAAGGTTATCATCCTGGGAGATTCTGGAGTTGGTAAGACTTCACTCATGAACC AGTATGTGAACAAGAAGTTCAGTAATCAGTACAAAGCGACAATAGGAGCAGACTTCCTGA CGAAGGAGGTGATGGTGGATGACAGACTAGTCACAATGCAGATCTGGGACACAGCCGGAC AGGAACGGTTCCAGTCTCTTGGCGTGGCCTTCTACAGAGGCGCAGACTGCTGCGTTCTGG TGTTTGATGTGACTGCCCCCAACACATTCAAAACCCTGGATAGCTGGAGAGATGAGTTTC TCATCCAGGCCAGTCCCCGGGATCCCGAAAACTTCCCCTTTGTTGTGTTGGGAAACAAGA TCGACCTCGAAAACAGACAGGTGGCCACGAAGCGGGCGCAGGCCTGGTGCTACAGCAAAA ACAACATTCCCTACTTTGAGACCAGCGCCAAGGAGGCCATCAATGTGGAGCAAGCCTTCC AGACGATCGCTCGGAACGCGCTGAAGCAGGAGACGGAGGTGGAGCTCTACAATGAATTCC CTGAACCCATCAAACTGGACAAGAACGACCGGGCCAAGCCCCCGGCGGAAACCTGCAGTT GCTGAAGCGACAGTGAGCAGAGCACAGAGTCCTTCACGATCCAAGAACACACTTAGGCCT TCCACCACACGCCCTCCTTCCCCAGAGTCATCTCTCCTTTCCAGCTGCCAAGAGAAACCC CACCCTACTACACCCTCACCCTGCACACACACACACACACACACACACATACATACCTGA CACAGACTCCACGGCACAGGCCCGAGGCGGCTCCATCAGCGTCCCCACAGCAGCCCTCTT GTGGCAGCAGGATGGGCCAGCTGTAGAAACCCCTCCGGTGTGGAGTCGGCATCAGAAGCT TCCTTTTTGTCCACTGGAGAGAGAGAACTGTTTACAGTTAATCTGTGTCTAATTAGTTAC CTGATTTTTTTAACCGTCTTGTGGTCTTTTTACCCCCACCCGTCCCCTCCTGTGAAGGCT CCACTTGGGAAGGCTGGTGCCCCATGCTCATTACAGGCTCACACCCAGTCTGTCAGGCTG AGTTTTGTATGTATCTGTTAATGCTTGTTACTTTTAACTAATCAGATCTTTTTACAGTAT CCATTTATTATGTAATGCTTCTTAGAAAAGAACCTTATAGTACATGTTAATATATGCAAC CAATTAAAATGTATAAATTAGTGTAAGAAATTCTTGGATTATGTGTTTAAGTCCTGTAAT GCAGGTGTAAAGATGGAGGGTTGAGCCCTGTCTGGATTACAGAGTGTTTAGCAACTCCGA ATTCAGAAATCCAGCTGGAGGCAGTATTCTGTACAGTAGACATGAGAATTATGTACGCCT TTTATCAAAGACTTAAGAGCCAAAAAGCTTTTCATCTCTCCAGGGGGAAAACTGTCCAGT TCCTTCTGTATCTAAATTTTCCACAAGGTTGATTTGCATAATACAGTGTGTGTGCAATGG AGAAATGACTGTTGTTTGTTTTGGAACTTAAAACTCCCAATTTTCCTTTTTCCCCACCCT GCTCCACGCTTTGAAACTCCCCTATTAGATCAGTGTCCCACCTACACGCGGGAAAGGAAA GTCCTAACAGATCTGTCCTGGTGATCTTACCTTTGTTCTAGAAGGCGCTCCTTTCAGGGT TGTGGTCCTTAGGTTAGCAAACCCTTCTTTTCCCCACCGCCTCCCAGTATTGCCCGCCAG GATTACCCTGTTTCTTTGGTGTGGAGCCGGGCAGTTCTGGCCTCCCTGGGATCCGCCCCT GCGTTGTAGCTTGCTTAACGGAGCACGTCCCTTCTCCATGGGCCTGCATTCAAGGGTGTG GGCCAGGTTCTTCTGTAAAGAGATGAACGTGATGCCAATAAAATGTAACAAGAACAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGGGGCGGCGGAATTCGCGGAAGTGGGAGCGGAGCCCGAGTCTTGGCCATAAAGCCCGA GGCGGCGGCGGTGGCGGCGCTGGAAGCTTGGACAGGCTGAGGATCCCGCTGCAATCGGAA CTTGGACTTTCTTCCGCCCTCGTCTTCCCTCCGTCTCCTCCCCGGCAGACCCCTACCGAC ACGCCTGGCCCGGAGCCCAGCGGAGCGGCCGCGTTTGAAGGATGACCTCTAGGAAGAAAG TGTTGCTGAAGGTTATCATCCTGGGAGATTCTGGAGTTGGTAAGACTTCACTCATGAACC AGTATGTGAACAAGAAGTTCAGTAATCAGTACAAAGCGACAATAGGAGCAGACTTCCTGA CGAAGGAGGTGATGGTGGATGACAGACTAGTCACAATGCAGATCTGGGACACAGCCGGAC AGGAACGGTTCCAGTCTCTTGGCGTGGCCTTCTACAGAGGCGCAGACTGCTGCGTTCTGG TGTTTGATGTGACTGCCCCCAACACATTCAAAACCCTGGATAGCTGGAGAGATGAGTTTC TCATCCAGGCCAGTCCCCGGGATCCCGAAAACTTCCCCTTTGTTGTGTTGGGAAACAAGA TCGACCTCGAAAACAGACAGGTGGCCACGAAGCGGGCGCAGGCCTGGTGCTACAGCAAAA ACAACATTCCCTACTTTGAGACCAGCGCCAAGGAGGCCATCAATGTGGAGCAAGCCTTCC AGACGATCGCTCGGAACGCGCTGAAGCAGGAGACGGAGGTGGAGCTCTACAATGAATTCC CTGAACCCATCAAACTGGACAAGAACGACCGGGCCAAGCCCCCGGCGGAAACCTGCAGTT GCTGAAGCGACAGTGAGCAGAGCACAGAGTCCTTCACGATCCAAGAACACACTTAGGCCT TCCACCACACGCCCTCCTTCCCCAGAGTCATCTCTCCTTTCCAGCTGCCAAGAGAAACCC CACCCTACTACACCCTCACCCTGCACACACACACACACACACACACACATACATACCTGA CACAGACTCCACGGCACAGGCCCGAGGCGGCTCCATCAGCGTCCCCACAGCAGCCCTCTT GTGGCAGCAGGATGGGCCAGCTGTAGAAACCCCTCCGGTGTGGAGTCGGCATCAGAAGCT TCCTTTTTGTCCACTGGAGAGAGAGAACTGTTTACAGTTAATCTGTGTCTAATTAGTTAC CTGATTTTTTTAACCGTCTTGTGGTCTTTTTACCCCCACCCGTCCCCTCCTGTGAAGGCT CCACTTGGGAAGGCTGGTGCCCCATGCTCATTACAGGCTCACACCCAGTCTGTCAGGCTG AGTTTTGTATGTATCTGTTAATGCTTGTTACTTTTAACTAATCAGATCTTTTTACAGTAT CCATTTATTATGTAATGCTTCTTAGAAAAGAACCTTATAGTACATGTTAATATATGCAAC CAATTAAAATGTATAAATTAGTGTAAGAAATTCTTGGATTATGTGTTTAAGTCCTGTAAT GCAGGTGTAAAGATGGAGGGTTGAGCCCTGTCTGGATTACAGAGTGTTTAGCAACTCCGA ATTCAGAAATCCAGCTGGAGGCAGTATTCTGTACAGTAGACATGAGAATTATGTACGCCT TTTATCAAAGACTTAAGAGCCAAAAAGCTTTTCATCTCTCCAGGGGGAAAACTGTCCAGT TCCTTCTGTATCTAAATTTTCCACAAGGTTGATTTGCATAATACAGTGTGTGTGCAATGG AGAAATGACTGTTGTTTGTTTTGGAACTTAAAACTCCCAATTTTCCTTTTTCCCCACCCT GCTCCACGCTTTGAAACTCCCCTATTAGATCAGTGTCCCACCTACACGCGGGAAAGGAAA GTCCTAACAGATCTGTCCTGGTGATCTTACCTTTGTTCTAGAAGGCGCTCCTTTCAGGGT TGTGGTCCTTAGGTTAGCAAACCCTTCTTTTCCCCACCGCCTCCCAGTATTGCCCGCCAG GATTACCCTGTTTCTTTGGTGTGGAGCCGGGCAGTTCTGGCCTCCCTGGGATCCGCCCCT GCGTTGTAGCTTGCTTAACGGAGCACGTCCCTTCTCCATGGGCCTGCATTCAAGGGTGTG GGCCAGGTTCTTCTGTAAAGAGATGAACGTGATGCCAATAAAATGTAACAAGAACAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 477-2143, - strand, RNAz p=0.970708 | |
| 1587-1700, - strand, RNAz p=0.549166 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 477-2143, - strand, RNAz p=0.970708 | |
| 1587-1700, - strand, RNAz p=0.549166 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 3-211, gnl|bosTau2|chr22 (47421466-47421262) | |
| 3-211, gnl|Hg17|chr3 (129927687-129927890) | |
| 3-211, gnl|Mm7|chr6 (88120339-88120151) | |
| 249-718, gnl|bosTau2|chrX (41825917-41826386) | |
| 249-718, gnl|Hg17|chrX (13486547-13487016) | |
| 249-718, gnl|Mm7|chrX (161232651-161232182) | |
| 398-623, gnl|bosTau2|chr22 (47482835-47482610) | |
| 398-623, gnl|canFam2|chr20 (5772429-5772664) | |
| 398-623, gnl|danRer3|chr14 (5737920-5737693) | |
| 398-623, gnl|dasNov1|scaffold_51536 (39762-39983) | |
| 398-623, gnl|echTel1|scaffold_289484 (80357-80122) | |
| 398-623, gnl|fr1|chrUn (112446811-112446579) | |
| 398-623, gnl|galGal2|chr12 (9175491-9175262) | |
| 398-623, gnl|hg17|chr3 (130007911-130008146) | |
| 398-623, gnl|Hg17|chr3 (130007909-130008134) | |
| 398-623, gnl|loxAfr1|scaffold_23796 (32977-32742) | |
| 398-623, gnl|mm7|chr6 (88080308-88080075) | |
| 398-623, gnl|Mm7|chr9 (54854433-54854208) | |
| 398-623, gnl|monDom2|scaffold_5 (47613608-47613835) | |
| 398-623, gnl|oryCun1|scaffold_177180 (11591-11356) | |
| 398-623, gnl|panTro1|chr2 (132060481-132060716) | |
| 398-623, gnl|rheMac2|chr11 (86028358-86028123) | |
| 398-623, gnl|rn3|chr4 (122453477-122453242) | |
| 398-623, gnl|tetNig1|chr11 (1030156-1029921) | |
| 398-623, gnl|xenTro1|scaffold_72 (1397925-1398155) | |
| 747-989, gnl|bosTau2|chr22 (47479321-47479074) | |
| 747-989, gnl|Hg17|chr3 (130014865-130015160) | |
| 747-989, gnl|Mm7|chr9 (54854080-54853787) | |
| 1083-1975, gnl|bosTau2|chr22 (47479045-47478176) | |
| 1083-1975, gnl|canFam2|chr20 (5778493-5779234) | |
| 1083-1975, gnl|dasNov1|scaffold_51536 (40403-41059) | |
| 1083-1975, gnl|echTel1|scaffold_289484 (75627-74887) | |
| 1083-1975, gnl|galGal2|chr12 (9174082-9173426) | |
| 1083-1975, gnl|hg17|chr3 (130015200-130015933) | |
| 1083-1975, gnl|Hg17|chr3 (130015243-130016148) | |
| 1083-1975, gnl|loxAfr1|scaffold_23796 (28087-27350) | |
| 1083-1975, gnl|mm7|chr6 (88075295-88074597) | |
| 1083-1975, gnl|Mm7|chr9 (54853709-54852838) | |
| 1083-1975, gnl|monDom2|scaffold_5 (47616438-47617159) | |
| 1083-1975, gnl|oryCun1|scaffold_177180 (7241-6515) | |
| 1083-1975, gnl|panTro1|chr2 (132067766-132068498) | |
| 1083-1975, gnl|rheMac2|chr11 (86021030-86020305) | |
| 1083-1975, gnl|rn3|chr4 (122448253-122447559) | |
| 1083-1975, gnl|xenTro1|scaffold_72 (1400632-1401381) | |
| 2036-2158, gnl|bosTau2|chr22 (47478141-47478025) | |
| 2036-2158, gnl|Hg17|chr3 (130016212-130016336) | |
| 2036-2158, gnl|Mm7|chr9 (54852787-54852657) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-211, gnl|bosTau2|chr22 (47421466-47421262) | |
| 3-211, gnl|Hg17|chr3 (129927687-129927890) | |
| 3-211, gnl|Mm7|chr6 (88120339-88120151) | |
| 249-718, gnl|bosTau2|chrX (41825917-41826386) | |
| 249-718, gnl|Hg17|chrX (13486547-13487016) | |
| 249-718, gnl|Mm7|chrX (161232651-161232182) | |
| 398-623, gnl|bosTau2|chr22 (47482835-47482610) | |
| 398-623, gnl|canFam2|chr20 (5772429-5772664) | |
| 398-623, gnl|danRer3|chr14 (5737920-5737693) | |
| 398-623, gnl|dasNov1|scaffold_51536 (39762-39983) | |
| 398-623, gnl|echTel1|scaffold_289484 (80357-80122) | |
| 398-623, gnl|fr1|chrUn (112446811-112446579) | |
| 398-623, gnl|galGal2|chr12 (9175491-9175262) | |
| 398-623, gnl|hg17|chr3 (130007911-130008146) | |
| 398-623, gnl|Hg17|chr3 (130007909-130008134) | |
| 398-623, gnl|loxAfr1|scaffold_23796 (32977-32742) | |
| 398-623, gnl|mm7|chr6 (88080308-88080075) | |
| 398-623, gnl|Mm7|chr9 (54854433-54854208) | |
| 398-623, gnl|monDom2|scaffold_5 (47613608-47613835) | |
| 398-623, gnl|oryCun1|scaffold_177180 (11591-11356) | |
| 398-623, gnl|panTro1|chr2 (132060481-132060716) | |
| 398-623, gnl|rheMac2|chr11 (86028358-86028123) | |
| 398-623, gnl|rn3|chr4 (122453477-122453242) | |
| 398-623, gnl|tetNig1|chr11 (1030156-1029921) | |
| 398-623, gnl|xenTro1|scaffold_72 (1397925-1398155) | |
| 747-989, gnl|bosTau2|chr22 (47479321-47479074) | |
| 747-989, gnl|Hg17|chr3 (130014865-130015160) | |
| 747-989, gnl|Mm7|chr9 (54854080-54853787) | |
| 1083-1975, gnl|bosTau2|chr22 (47479045-47478176) | |
| 1083-1975, gnl|canFam2|chr20 (5778493-5779234) | |
| 1083-1975, gnl|dasNov1|scaffold_51536 (40403-41059) | |
| 1083-1975, gnl|echTel1|scaffold_289484 (75627-74887) | |
| 1083-1975, gnl|galGal2|chr12 (9174082-9173426) | |
| 1083-1975, gnl|hg17|chr3 (130015200-130015933) | |
| 1083-1975, gnl|Hg17|chr3 (130015243-130016148) | |
| 1083-1975, gnl|loxAfr1|scaffold_23796 (28087-27350) | |
| 1083-1975, gnl|mm7|chr6 (88075295-88074597) | |
| 1083-1975, gnl|Mm7|chr9 (54853709-54852838) | |
| 1083-1975, gnl|monDom2|scaffold_5 (47616438-47617159) | |
| 1083-1975, gnl|oryCun1|scaffold_177180 (7241-6515) | |
| 1083-1975, gnl|panTro1|chr2 (132067766-132068498) | |
| 1083-1975, gnl|rheMac2|chr11 (86021030-86020305) | |
| 1083-1975, gnl|rn3|chr4 (122448253-122447559) | |
| 1083-1975, gnl|xenTro1|scaffold_72 (1400632-1401381) | |
| 2036-2158, gnl|bosTau2|chr22 (47478141-47478025) | |
| 2036-2158, gnl|Hg17|chr3 (130016212-130016336) | |
| 2036-2158, gnl|Mm7|chr9 (54852787-54852657) |
| Expressed library(ies): 37 entry(ies) | More info |
| Expressed library(ies): 37 entry(ies) | Help | Less info |
| cbr (1.40773) | |
| cty (0.832639) | |
| ton (0.702001) | |
| ece (0.687916) | |
| ssp (0.542079) | |
| nco (0.485201) | |
| cbl (0.45919) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| eep (0.367692) | |
| fbs (0.350693) | |
| eye (0.341006) | |
| nje (0.33184) | |
| cli (0.305623) | |
| pla (0.267344) | |
| nmm (0.265604) | |
| ese (0.253004) | |
| ecc (0.23007) | |
| hea (0.204499) | |
| eje (0.197668) | |
| col (0.195008) | |
| fty (0.17584) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cag (0.151194) | |
| pty (0.142714) | |
| ste (0.135208) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 37 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (1.40773) | |
| cty (0.832639) | |
| ton (0.702001) | |
| ece (0.687916) | |
| ssp (0.542079) | |
| nco (0.485201) | |
| cbl (0.45919) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| eep (0.367692) | |
| fbs (0.350693) | |
| eye (0.341006) | |
| nje (0.33184) | |
| cli (0.305623) | |
| pla (0.267344) | |
| nmm (0.265604) | |
| ese (0.253004) | |
| ecc (0.23007) | |
| hea (0.204499) | |
| eje (0.197668) | |
| col (0.195008) | |
| fty (0.17584) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cag (0.151194) | |
| pty (0.142714) | |
| ste (0.135208) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |