Non-Coding RNA Search

Ss1.1-Liv1-LVR010044C08.5

Sequence:


               
               GTGGGGCTGAAGGAAAACACGGAGAGGGAGCCTGGTCGGGACAGGAAGAGGCGGGGGACC
GCGGCGGAGGTGGTGCAGAGTAAGAAAATTGAAGTCAAAGACCATGGGAGATGCTGCCAA
ACCTTATTTTGTGAAGCGTGCTAAAGAGCGAGGGACTACTGATGATGAAGATTTCAGAAG
GGGTCACCCCCAACAAGATTATTTAATAATGGATGATTATGCTAAAGGCTATAGCAGTAA
AATGGAAAAAGGCCCTCCCAAAAAAAAATTAACACCAGGGAACTATGGGAATACCCCCAG
AAAAGGACCATATGCTGTTTCCAGCAATCCATATGCATTTAAGAACCCAATTTACAGTCA
ACCTGTTTGGATAACTGATAACCACAAAGATCAGAGTAAGAGATGGCTATCTGATGAACT
TGGTAATGCAGACAGTTGGAGAGAATTCAAACCTGGACCTAGAATTCCTGTTTTAAACCG
ACCAAGAAAAGACTCTTTTCAAGAAAGTGAAGATGTATATAGGTGGCAAGATGGAAGAGG
CTGCAGAACTGTAAGACGATTGTTTCATAAAGACCTGACAAGCCTGGAGACCATGTCAGA
AATGGAAGCAGGAAGCCCTGGTAATGTTTCCACCCTGTCAGGTTACAACCCTGAAGTCAA
CAGGATTGTGACTGAAGTCAGTTTTCTTTCTCATTCAGATGAGTTTTACTATTTTCAGCA
ATGCAGTTCCAGTTTTTCATAGTTTCTGCTTATTTAATATGATTAAGGACCATGTTTTTT
GGGTAGCTTCAACACATTGCGTGTATTGGTTCATTTCAAAGTTTACCACAGGCTCATTTT
ACTTTAGTAAAAACATATTTCCGGAGTTCCTGTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGGGCTGAAGGAAAACACGGAGAGGGAGCCTGGTCGGGACAGGAAGAGGCGGGGGACC
GCGGCGGAGGTGGTGCAGAGTAAGAAAATTGAAGTCAAAGACCATGGGAGATGCTGCCAA
ACCTTATTTTGTGAAGCGTGCTAAAGAGCGAGGGACTACTGATGATGAAGATTTCAGAAG
GGGTCACCCCCAACAAGATTATTTAATAATGGATGATTATGCTAAAGGCTATAGCAGTAA
AATGGAAAAAGGCCCTCCCAAAAAAAAATTAACACCAGGGAACTATGGGAATACCCCCAG
AAAAGGACCATATGCTGTTTCCAGCAATCCATATGCATTTAAGAACCCAATTTACAGTCA
ACCTGTTTGGATAACTGATAACCACAAAGATCAGAGTAAGAGATGGCTATCTGATGAACT
TGGTAATGCAGACAGTTGGAGAGAATTCAAACCTGGACCTAGAATTCCTGTTTTAAACCG
ACCAAGAAAAGACTCTTTTCAAGAAAGTGAAGATGTATATAGGTGGCAAGATGGAAGAGG
CTGCAGAACTGTAAGACGATTGTTTCATAAAGACCTGACAAGCCTGGAGACCATGTCAGA
AATGGAAGCAGGAAGCCCTGGTAATGTTTCCACCCTGTCAGGTTACAACCCTGAAGTCAA
CAGGATTGTGACTGAAGTCAGTTTTCTTTCTCATTCAGATGAGTTTTACTATTTTCAGCA
ATGCAGTTCCAGTTTTTCATAGTTTCTGCTTATTTAATATGATTAAGGACCATGTTTTTT
GGGTAGCTTCAACACATTGCGTGTATTGGTTCATTTCAAAGTTTACCACAGGCTCATTTT
ACTTTAGTAAAAACATATTTCCGGAGTTCCTGTTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26327393|dbj|BAC27440.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26327393|dbj|BAC27440.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               152-428, - strand, RNAz p=0.961382

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-428, - strand, RNAz p=0.961382

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               72-862, gnl|bosTau2|chr24 (26493958-26493166)
               

               
               72-862, gnl|Hg17|chr9 (86197700-86196892)
               

               
               72-862, gnl|Mm7|chr13 (58930536-58929758)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               72-862, gnl|bosTau2|chr24 (26493958-26493166)
               

               
               72-862, gnl|Hg17|chr9 (86197700-86196892)
               

               
               72-862, gnl|Mm7|chr13 (58930536-58929758)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lun (0.150489)
               

               
               hlv (0.139256)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)
               

               
               hlv (0.139256)

	72-862, gnl\|bosTau2\|chr24 (26493958-26493166)
	72-862, gnl\|Hg17\|chr9 (86197700-86196892)
	72-862, gnl\|Mm7\|chr13 (58930536-58929758)