Non-Coding RNA Search

Ss1.1-Liv1-LVR010044G01.5

Sequence:


               
               GCTGTTGTCGACGTTAGGGGCGGTTACCCGAAGGCTTCCTCGGCTCTGGACGGGTTGTAA
GATGCCGGGAAGAGGCCGCTGCCCCGATTGCGGCTCCACTGAGCTGGTGGAAGACTCACA
CTATTCGCAGAGCCAGCTGGTGTGCTCCGACTGCGGCTGTGTGGTCACCGAGGGAGTCCT
TACGACCACCTTCAGTGATGAGGGCAACCTCCGAGAAGTAACATATTCCCGAAGCACAGG
GGAAAATGAACAAGTTAGTCGCAGCCAGCAACGAGGTCTCCGCCGAGTGAGAGACCTCTG
TCGAGTTCTGCAGCTACCACCAACATTTGAGGACACGGCAGTTGCCTACTACCAACAGGC
ATACCAGCACTCTGGCATCCGTGCTGCCAGGCTGCAAAAGAAGGAGGTGTTGGTCGGGTG
CTGTGTCTTAATTACCTGCCGGCAGCGTAACTGGCCCCTGACCATGGGAACCATCTGCAC
CCTAATCTATGCAGATTTGGATGTGTTTTCTGGCACCTACATGCAGATGGTGAAGCTCCT
GGGGCTAGACGTGCCGTCTCTGTGCTTGGCAGACCTGGTGAAGACTTACTGTAGCAGCTT
CAAACTTTTTCAAGCCTCCCCGTCTGTGCCAGCCAAGTACGTGGAAGACAAGGAGAAGAT
GCTGTCTCGAACACTGCAGCTGGTGGAGCTGGCGGATGAGACGTGGCTGGTGACTGGGCG
GCATCCCCTACCTGTCGTTACTGCTGCCACTTTCCTGGCCTGGCAGTCGCTGCAGCCTTC
TGATCGGCTGACTTGTTCCCTGGCCCGATTTTGTAAATTGGCAAACGTGGACCTTCCCTA
CCCTGCTGCCTCCCGCCTGCAGGAGCTGTTGGCCGTGCTGCTGCGGATGGCCGGGCAGCT
GGCCTGGTTGCAGGTTCTGAAGCTTGACAAGCGGTCTGTGGTGAAGCACATCGGTGACCT
CCTCCAGCACCGCCACACGCTAGTCCGCAAGGCCTTTCGAGATGGAACCTCAGAGACAGA
CGAGCGGGAGAAGGAGCTGCCGGGGCAGGGACAGGGGAAGGAGGAGGCGGGGAGCAGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGTTGTCGACGTTAGGGGCGGTTACCCGAAGGCTTCCTCGGCTCTGGACGGGTTGTAA
GATGCCGGGAAGAGGCCGCTGCCCCGATTGCGGCTCCACTGAGCTGGTGGAAGACTCACA
CTATTCGCAGAGCCAGCTGGTGTGCTCCGACTGCGGCTGTGTGGTCACCGAGGGAGTCCT
TACGACCACCTTCAGTGATGAGGGCAACCTCCGAGAAGTAACATATTCCCGAAGCACAGG
GGAAAATGAACAAGTTAGTCGCAGCCAGCAACGAGGTCTCCGCCGAGTGAGAGACCTCTG
TCGAGTTCTGCAGCTACCACCAACATTTGAGGACACGGCAGTTGCCTACTACCAACAGGC
ATACCAGCACTCTGGCATCCGTGCTGCCAGGCTGCAAAAGAAGGAGGTGTTGGTCGGGTG
CTGTGTCTTAATTACCTGCCGGCAGCGTAACTGGCCCCTGACCATGGGAACCATCTGCAC
CCTAATCTATGCAGATTTGGATGTGTTTTCTGGCACCTACATGCAGATGGTGAAGCTCCT
GGGGCTAGACGTGCCGTCTCTGTGCTTGGCAGACCTGGTGAAGACTTACTGTAGCAGCTT
CAAACTTTTTCAAGCCTCCCCGTCTGTGCCAGCCAAGTACGTGGAAGACAAGGAGAAGAT
GCTGTCTCGAACACTGCAGCTGGTGGAGCTGGCGGATGAGACGTGGCTGGTGACTGGGCG
GCATCCCCTACCTGTCGTTACTGCTGCCACTTTCCTGGCCTGGCAGTCGCTGCAGCCTTC
TGATCGGCTGACTTGTTCCCTGGCCCGATTTTGTAAATTGGCAAACGTGGACCTTCCCTA
CCCTGCTGCCTCCCGCCTGCAGGAGCTGTTGGCCGTGCTGCTGCGGATGGCCGGGCAGCT
GGCCTGGTTGCAGGTTCTGAAGCTTGACAAGCGGTCTGTGGTGAAGCACATCGGTGACCT
CCTCCAGCACCGCCACACGCTAGTCCGCAAGGCCTTTCGAGATGGAACCTCAGAGACAGA
CGAGCGGGAGAAGGAGCTGCCGGGGCAGGGACAGGGGAAGGAGGAGGCGGGGAGCAGCTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|59858161|gb|AAX08915.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|59858161|gb|AAX08915.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-215, gnl|bosTau2|chr27 (20982375-20982168)
               

               
               1-215, gnl|Hg17|chr8 (37826516-37826306)
               

               
               1-215, gnl|Mm7|chr8 (25884206-25883993)
               


               
               595-1062, gnl|bosTau2|chr27 (20979344-20978876)
               

               
               595-1062, gnl|Hg17|chr8 (37821892-37821424)
               

               
               595-1062, gnl|Mm7|chr8 (25880195-25879727)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-215, gnl|bosTau2|chr27 (20982375-20982168)
               

               
               1-215, gnl|Hg17|chr8 (37826516-37826306)
               

               
               1-215, gnl|Mm7|chr8 (25884206-25883993)
               


               
               595-1062, gnl|bosTau2|chr27 (20979344-20978876)
               

               
               595-1062, gnl|Hg17|chr8 (37821892-37821424)
               

               
               595-1062, gnl|Mm7|chr8 (25880195-25879727)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ece (0.229305)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               cje (0.165235)
               

               
               cov (0.132153)
               

               
               med (0.116252)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               cje (0.165235)
               

               
               cov (0.132153)
               

               
               med (0.116252)

	1-215, gnl\|bosTau2\|chr27 (20982375-20982168)
	1-215, gnl\|Hg17\|chr8 (37826516-37826306)
	1-215, gnl\|Mm7\|chr8 (25884206-25883993)

	595-1062, gnl\|bosTau2\|chr27 (20979344-20978876)
	595-1062, gnl\|Hg17\|chr8 (37821892-37821424)
	595-1062, gnl\|Mm7\|chr8 (25880195-25879727)

	ece (0.229305)
	fty (0.17584)
	ton (0.1755)
	cje (0.165235)
	cov (0.132153)
	med (0.116252)