Ss1.1-Liv1-LVR010044G03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCCCGCGGGGCCGCCTGCAGGGAGCAGTCCGGCGCGGGAGGCGGGGCGGAGGGCAGGCC TGGCGCCGACGTGTGTGTGAAGCGGCCGCCCCCGCAGCCCAGGGAGAGTCGAGAGCAGGC GGCGGAGCGCGAGCAGGACGCAGCCGGTCGGCTCGGCGGGATATGAGGTGCCCGTCCTGA GCTCCAGAGAGCTGCCCTCCACGGAGCCTAGGAGAGGAGCGGGCGAACATGAAGTCCAAT CCTGCCATCCAAGCTGCCATTGACCTCACGGCGGGGGCTGCAGGGGGCACAGCGTGCGTC TTGACCGGGCAGCCCTTCGACACGATGAAAGTGAAGATGCAGACGTTTCCCGACCTGTAC AGGGGCCTCACGGACTGCTGCCTCAAGACCTACTCGCAGGTGGGCTTCCGGGGCTTCTAC AAGGGGACCAGCCCGGCACTGATCGCCAACATCGCCGAGAACTCCGTCCTCTTCATGTGC TACGGCTTCTGCCAGCAGGTGGTGCGGAAGGTGGCGGGACTGGACAGGCAGGCGAAGCTG AGTGACCTGCAGAACGCGGCTGCTGGCTCCTTCGCCTCTGCCTTTGCTGCCCTGGTCCTC TGCCCCACCGAGCTGGTGAAGTGCCGGCTGCAGACCATGTATGAGATGGAGACGTCAGGA AAGATAGCCAAAAGCCAGAACACAGTTTGGTCTGTCGTGAAGAGCATCCTTCGCAAAGAC GGCCCCTTGGGCTTCTACCATGGACTGTCGAGCACTTTACTTCGAGAAGTACCGGGCTAC TTCTTCTTCTTCGGGGGCTATGAACTGAGCCGATCTTTTTTTGCATCGGGGAGATCAAAA GATGAATTAGGCCCTGTCCCTTTGATGTTAAGTGGAGGGTTTGGCGGCATCTGCCTCTGG CTTGCTGTTTACCCCGTGGATTGTATCAAATCCAGAATTCAAGTTCTTTCCATGTCTGGA AAACAGGCAGGATTCATTGGAACCTTTATAAGTGTTGTGAAAAATGAAGGGATAACGGCT CTGTACTCTGGACTGAAACCTACCATGATTCGTGCGTTCCCTGCCAATGGGGCACTCTTT TTGGCCTACGAATACAGCCGGAAGTTGATGATGAGCCAGTTTGAAGCATACTGAAATGTT CTGGTGAACCTCGATCCAAATGCAGGCGTCTGAGGACTGCAGTTCATCTCAGGGTTCATG GAGTACAAGACCAACATGGAATTACTGGGATTTCGTGGGAATTTTCTTTTTTTGTCTTCT ACTCTTCTACCTTAAATGTTTCAGCTTTATAGATGAGCCTCTATTTTACACCAGATAATT TCTGCCCATAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCCCGCGGGGCCGCCTGCAGGGAGCAGTCCGGCGCGGGAGGCGGGGCGGAGGGCAGGCC TGGCGCCGACGTGTGTGTGAAGCGGCCGCCCCCGCAGCCCAGGGAGAGTCGAGAGCAGGC GGCGGAGCGCGAGCAGGACGCAGCCGGTCGGCTCGGCGGGATATGAGGTGCCCGTCCTGA GCTCCAGAGAGCTGCCCTCCACGGAGCCTAGGAGAGGAGCGGGCGAACATGAAGTCCAAT CCTGCCATCCAAGCTGCCATTGACCTCACGGCGGGGGCTGCAGGGGGCACAGCGTGCGTC TTGACCGGGCAGCCCTTCGACACGATGAAAGTGAAGATGCAGACGTTTCCCGACCTGTAC AGGGGCCTCACGGACTGCTGCCTCAAGACCTACTCGCAGGTGGGCTTCCGGGGCTTCTAC AAGGGGACCAGCCCGGCACTGATCGCCAACATCGCCGAGAACTCCGTCCTCTTCATGTGC TACGGCTTCTGCCAGCAGGTGGTGCGGAAGGTGGCGGGACTGGACAGGCAGGCGAAGCTG AGTGACCTGCAGAACGCGGCTGCTGGCTCCTTCGCCTCTGCCTTTGCTGCCCTGGTCCTC TGCCCCACCGAGCTGGTGAAGTGCCGGCTGCAGACCATGTATGAGATGGAGACGTCAGGA AAGATAGCCAAAAGCCAGAACACAGTTTGGTCTGTCGTGAAGAGCATCCTTCGCAAAGAC GGCCCCTTGGGCTTCTACCATGGACTGTCGAGCACTTTACTTCGAGAAGTACCGGGCTAC TTCTTCTTCTTCGGGGGCTATGAACTGAGCCGATCTTTTTTTGCATCGGGGAGATCAAAA GATGAATTAGGCCCTGTCCCTTTGATGTTAAGTGGAGGGTTTGGCGGCATCTGCCTCTGG CTTGCTGTTTACCCCGTGGATTGTATCAAATCCAGAATTCAAGTTCTTTCCATGTCTGGA AAACAGGCAGGATTCATTGGAACCTTTATAAGTGTTGTGAAAAATGAAGGGATAACGGCT CTGTACTCTGGACTGAAACCTACCATGATTCGTGCGTTCCCTGCCAATGGGGCACTCTTT TTGGCCTACGAATACAGCCGGAAGTTGATGATGAGCCAGTTTGAAGCATACTGAAATGTT CTGGTGAACCTCGATCCAAATGCAGGCGTCTGAGGACTGCAGTTCATCTCAGGGTTCATG GAGTACAAGACCAACATGGAATTACTGGGATTTCGTGGGAATTTTCTTTTTTTGTCTTCT ACTCTTCTACCTTAAATGTTTCAGCTTTATAGATGAGCCTCTATTTTACACCAGATAATT TCTGCCCATAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 276-542, gnl|bosTau2|chr12 (11588793-11588527) | |
| 276-542, gnl|Hg17|chr13 (40271185-40271451) | |
| 276-542, gnl|Mm7|chr8 (21172989-21172723) | |
| 681-851, gnl|bosTau2|chr12 (11573162-11572992) | |
| 681-851, gnl|canFam2|chr25 (3460609-3460459) | |
| 681-851, gnl|danRer3|chr5 (14945975-14945815) | |
| 681-851, gnl|dasNov1|scaffold_37094 (12872-12713) | |
| 681-851, gnl|echTel1|scaffold_209677 (3525-3685) | |
| 681-851, gnl|fr1|chrUn (176685883-176686044) | |
| 681-851, gnl|galGal2|chr1 (162617864-162617705) | |
| 681-851, gnl|hg17|chr13 (40279415-40279575) | |
| 681-851, gnl|Hg17|chr13 (40279430-40279600) | |
| 681-851, gnl|loxAfr1|scaffold_4962 (59137-59299) | |
| 681-851, gnl|mm7|chr8 (21163931-21163773) | |
| 681-851, gnl|Mm7|chr8 (21163916-21163746) | |
| 681-851, gnl|monDom2|scaffold_15 (53676981-53677141) | |
| 681-851, gnl|oryCun1|scaffold_187282 (42977-43137) | |
| 681-851, gnl|panTro1|chr14 (39988423-39988583) | |
| 681-851, gnl|rheMac2|chr17 (19867422-19867582) | |
| 681-851, gnl|rn3|chr16 (74297798-74297956) | |
| 681-851, gnl|tetNig1|chr7 (4995465-4995319) | |
| 681-851, gnl|xenTro1|scaffold_223 (1002744-1002907) | |
| 1008-1332, gnl|bosTau2|chr12 (11570030-11569703) | |
| 1008-1332, gnl|canFam2|chr25 (3457246-3457715) | |
| 1008-1332, gnl|canFam2|chr25 (3457262-3457721) | |
| 1008-1332, gnl|dasNov1|scaffold_37094 (9746-10184) | |
| 1008-1332, gnl|dasNov1|scaffold_59591 (202-646) | |
| 1008-1332, gnl|echTel1|scaffold_209677 (7182-6788) | |
| 1008-1332, gnl|echTel1|scaffold_209677 (7165-6782) | |
| 1008-1332, gnl|Hg17|chr13 (40281677-40281996) | |
| 1008-1332, gnl|hg17|chr22 (15500680-15501129) | |
| 1008-1332, gnl|hg17|chrY (27070477-27070916) | |
| 1008-1332, gnl|loxAfr1|scaffold_4962 (62382-61956) | |
| 1008-1332, gnl|loxAfr1|scaffold_4962 (62382-61950) | |
| 1008-1332, gnl|mm7|chr8 (21160319-21160762) | |
| 1008-1332, gnl|mm7|chr8 (21160337-21160768) | |
| 1008-1332, gnl|Mm7|chr8 (21160892-21160574) | |
| 1008-1332, gnl|monDom2|scaffold_15 (53682054-53681583) | |
| 1008-1332, gnl|monDom2|scaffold_15 (53682023-53681577) | |
| 1008-1332, gnl|oryCun1|scaffold_131763 (5582-5142) | |
| 1008-1332, gnl|oryCun1|scaffold_187282 (45648-45198) | |
| 1008-1332, gnl|panTro1|chr14 (17785870-17785431) | |
| 1008-1332, gnl|panTro1|chr23 (15466856-15467305) | |
| 1008-1332, gnl|rheMac2|chr17 (1980971-1981421) | |
| 1008-1332, gnl|rheMac2|chr17 (1980987-1981427) | |
| 1008-1332, gnl|rn3|chr16 (74301812-74301375) | |
| 1008-1332, gnl|rn3|chr16 (74301796-74301369) | |
| 1008-1332, gnl|xenTro1|scaffold_223 (1005483-1005041) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 276-542, gnl|bosTau2|chr12 (11588793-11588527) | |
| 276-542, gnl|Hg17|chr13 (40271185-40271451) | |
| 276-542, gnl|Mm7|chr8 (21172989-21172723) | |
| 681-851, gnl|bosTau2|chr12 (11573162-11572992) | |
| 681-851, gnl|canFam2|chr25 (3460609-3460459) | |
| 681-851, gnl|danRer3|chr5 (14945975-14945815) | |
| 681-851, gnl|dasNov1|scaffold_37094 (12872-12713) | |
| 681-851, gnl|echTel1|scaffold_209677 (3525-3685) | |
| 681-851, gnl|fr1|chrUn (176685883-176686044) | |
| 681-851, gnl|galGal2|chr1 (162617864-162617705) | |
| 681-851, gnl|hg17|chr13 (40279415-40279575) | |
| 681-851, gnl|Hg17|chr13 (40279430-40279600) | |
| 681-851, gnl|loxAfr1|scaffold_4962 (59137-59299) | |
| 681-851, gnl|mm7|chr8 (21163931-21163773) | |
| 681-851, gnl|Mm7|chr8 (21163916-21163746) | |
| 681-851, gnl|monDom2|scaffold_15 (53676981-53677141) | |
| 681-851, gnl|oryCun1|scaffold_187282 (42977-43137) | |
| 681-851, gnl|panTro1|chr14 (39988423-39988583) | |
| 681-851, gnl|rheMac2|chr17 (19867422-19867582) | |
| 681-851, gnl|rn3|chr16 (74297798-74297956) | |
| 681-851, gnl|tetNig1|chr7 (4995465-4995319) | |
| 681-851, gnl|xenTro1|scaffold_223 (1002744-1002907) | |
| 1008-1332, gnl|bosTau2|chr12 (11570030-11569703) | |
| 1008-1332, gnl|canFam2|chr25 (3457246-3457715) | |
| 1008-1332, gnl|canFam2|chr25 (3457262-3457721) | |
| 1008-1332, gnl|dasNov1|scaffold_37094 (9746-10184) | |
| 1008-1332, gnl|dasNov1|scaffold_59591 (202-646) | |
| 1008-1332, gnl|echTel1|scaffold_209677 (7182-6788) | |
| 1008-1332, gnl|echTel1|scaffold_209677 (7165-6782) | |
| 1008-1332, gnl|Hg17|chr13 (40281677-40281996) | |
| 1008-1332, gnl|hg17|chr22 (15500680-15501129) | |
| 1008-1332, gnl|hg17|chrY (27070477-27070916) | |
| 1008-1332, gnl|loxAfr1|scaffold_4962 (62382-61956) | |
| 1008-1332, gnl|loxAfr1|scaffold_4962 (62382-61950) | |
| 1008-1332, gnl|mm7|chr8 (21160319-21160762) | |
| 1008-1332, gnl|mm7|chr8 (21160337-21160768) | |
| 1008-1332, gnl|Mm7|chr8 (21160892-21160574) | |
| 1008-1332, gnl|monDom2|scaffold_15 (53682054-53681583) | |
| 1008-1332, gnl|monDom2|scaffold_15 (53682023-53681577) | |
| 1008-1332, gnl|oryCun1|scaffold_131763 (5582-5142) | |
| 1008-1332, gnl|oryCun1|scaffold_187282 (45648-45198) | |
| 1008-1332, gnl|panTro1|chr14 (17785870-17785431) | |
| 1008-1332, gnl|panTro1|chr23 (15466856-15467305) | |
| 1008-1332, gnl|rheMac2|chr17 (1980971-1981421) | |
| 1008-1332, gnl|rheMac2|chr17 (1980987-1981427) | |
| 1008-1332, gnl|rn3|chr16 (74301812-74301375) | |
| 1008-1332, gnl|rn3|chr16 (74301796-74301369) | |
| 1008-1332, gnl|xenTro1|scaffold_223 (1005483-1005041) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) |