Non-Coding RNA Search

Ss1.1-Liv1-LVR010045A01.5

Sequence:


               
               ACTTCTGTTTGATGACAGTGAGCACAGTGCCTTGTACGCCGTTGCCTTTTTAATACCGCA
GGCCACATTAATTGGCTACCTGTTCTTAGTTTTCCATTTTTCCATGTTTTATTACCTTGA
TGAAGAATCAAGAACCATTGAGCCATTTTTGGTATCCCTGATCCCTTTCCTTCATTTTAT
CACCTTTCTTTTTATTCTTCGATGTCTGGAATGGAAGTTTGGGAAGACGTCAATGAGAAA
GGATCCCTTCTTTAGAATTTCTCCAAGAAGGAGCGATGTGTGTCCAAATCCAGAAGAGCC
AGAAGGGGAAGATGAAGATGTTCAGATGGAAAGAAGGAGAACAGCAGATGCCCTGAATTC
CACGAATTTCGATGAGAAACCTGTCATTATCGCCAGCTGTCTACGCAAGGAGTACACAGG
GAAAAGGAAACGCTGCTTGTCCAAGAGGAAGAAGAAAATAGCCGCAAGACATGTCTCTTT
CTGTGTTAGGAAAGGTGAGGTTTTAGGATTATTAGGACACAATGGAGCTGGTAAAAGTAC
ATCCATTAAAGTGATAACTGGAGACACAAAACCAACTGCTGGGCAGGTGCTCCTGAAAGG
GAGCAGCGGAGGGGACCCGCTGGGCTTCCTGGGGTACTGTCCCCAGGAGAACGCGCTGTG
GCCCAGCCTGACGGTGAAGGAGCATCTGGAGGTGTTCGCCGCCGTGAAGGGGCTGAGGAA
AGCGGACGCTGCCGCGGCCATCGCGAGGTTGGTGGATGCGCTCAAGCTGCAGGACCAGCT
GAAGCTCCCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTCTGTTTGATGACAGTGAGCACAGTGCCTTGTACGCCGTTGCCTTTTTAATACCGCA
GGCCACATTAATTGGCTACCTGTTCTTAGTTTTCCATTTTTCCATGTTTTATTACCTTGA
TGAAGAATCAAGAACCATTGAGCCATTTTTGGTATCCCTGATCCCTTTCCTTCATTTTAT
CACCTTTCTTTTTATTCTTCGATGTCTGGAATGGAAGTTTGGGAAGACGTCAATGAGAAA
GGATCCCTTCTTTAGAATTTCTCCAAGAAGGAGCGATGTGTGTCCAAATCCAGAAGAGCC
AGAAGGGGAAGATGAAGATGTTCAGATGGAAAGAAGGAGAACAGCAGATGCCCTGAATTC
CACGAATTTCGATGAGAAACCTGTCATTATCGCCAGCTGTCTACGCAAGGAGTACACAGG
GAAAAGGAAACGCTGCTTGTCCAAGAGGAAGAAGAAAATAGCCGCAAGACATGTCTCTTT
CTGTGTTAGGAAAGGTGAGGTTTTAGGATTATTAGGACACAATGGAGCTGGTAAAAGTAC
ATCCATTAAAGTGATAACTGGAGACACAAAACCAACTGCTGGGCAGGTGCTCCTGAAAGG
GAGCAGCGGAGGGGACCCGCTGGGCTTCCTGGGGTACTGTCCCCAGGAGAACGCGCTGTG
GCCCAGCCTGACGGTGAAGGAGCATCTGGAGGTGTTCGCCGCCGTGAAGGGGCTGAGGAA
AGCGGACGCTGCCGCGGCCATCGCGAGGTTGGTGGATGCGCTCAAGCTGCAGGACCAGCT
GAAGCTCCCCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               584-702, + strand, RNAz p=0.736459

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               584-702, + strand, RNAz p=0.736459

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               584-770, gnl|bosTau2|chr19 (56062932-56063118)
               

               
               584-770, gnl|Hg17|chr17 (64494063-64493876)
               

               
               584-770, gnl|Mm7|chr11 (110219491-110219305)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               584-770, gnl|bosTau2|chr19 (56062932-56063118)
               

               
               584-770, gnl|Hg17|chr17 (64494063-64493876)
               

               
               584-770, gnl|Mm7|chr11 (110219491-110219305)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	584-770, gnl\|bosTau2\|chr19 (56062932-56063118)
	584-770, gnl\|Hg17\|chr17 (64494063-64493876)
	584-770, gnl\|Mm7\|chr11 (110219491-110219305)