Ss1.1-Liv1-LVR010045A03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCATTCCCCAACATGGCGGCTCCCCAGGATGTCCACGTACGGATCTGTAACCAAGAGAT TGTTAAATTCGACCTGGAAGTGAAGGCGCTTATTCAGGATATTCGAGATTGTTCAGGACC CTTAAGTGCACTTACGGAACTGAATACTAAAGTGAAAGAAAAATTTCAACAGTTGCGGCA CAGAATACAGGAGCTTGAGCAGTCGGCTAAAGAGCAAGACAAAGAGTCAGAGAAGCAAAT TCTGCTCCAGGAAGTGGAGAATCATAAAAAGCAGATGCTCAGCAATCAGACCTCATGGAG GAAAGCTAATCTCGCTTGCAAAATTGCTATCGACAACTTAGAGAAAGCAGAACTTCTCCA GGGAGGCGACCTCTTAAGGCAAAGGAAAACTGCCAAAGAGAGCCTGGCCCAGACATCCAG CACCATCACGGAGAGCCTCATGGGGATCAGCAGGATGATGTCCCAGCAGGTCCAGCAGAG CGAGGAGGCCATGCAGACGCTAGTCAATTCTTCCCGGACTATCCTGGATGCAAATGAAGA ATTTAAGTCCATGTCGGGGACCATCCAGTTAGGACGGAAGCTCATCACAAAATATAATCG CCGAGAGCTGACGGACAAGCTTCTCATTTTCCTTGCACTGGCCCTCTTTCTTGCGACAGT CCTCTATATTGTGAAAAAGAGGCTCTTTCCGTTTTTGTGAGATCTGAGAGCTGCCACCTT TTGCCCTCTGAGCTCCAACATCAAGATCCAGCCAACCAGACCGGCCCACGCCCCCTAGTC CGCTCCAGTCGCTCCACAGGTCAGGTGGAGACACAGCCCATGGGTTTCTGCAGGTGGCTA AAGTGTAAGGGGCAAGCAGAGCAAGGGCAGAGAGGCCTGTCATCGGGACACCTGCAGGGA CATGAGGACTCCAAGAGCCGTCGCACACTGTGGGTGGCTGCTGCATGGAGCACTGGAGCC AGCTCCGGGATTTGGTGTCCCTCCTGCCTCTCCCTCTCCCACTGTGGCCTTCATGCCAGG TCTGGTGAAGGGAAGAGAGGAGGGAAGGGAAGGAGGAGGAGGAAAATACATCCATTCCTT GAATAAAGTTGACTATTTAATAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCATTCCCCAACATGGCGGCTCCCCAGGATGTCCACGTACGGATCTGTAACCAAGAGAT TGTTAAATTCGACCTGGAAGTGAAGGCGCTTATTCAGGATATTCGAGATTGTTCAGGACC CTTAAGTGCACTTACGGAACTGAATACTAAAGTGAAAGAAAAATTTCAACAGTTGCGGCA CAGAATACAGGAGCTTGAGCAGTCGGCTAAAGAGCAAGACAAAGAGTCAGAGAAGCAAAT TCTGCTCCAGGAAGTGGAGAATCATAAAAAGCAGATGCTCAGCAATCAGACCTCATGGAG GAAAGCTAATCTCGCTTGCAAAATTGCTATCGACAACTTAGAGAAAGCAGAACTTCTCCA GGGAGGCGACCTCTTAAGGCAAAGGAAAACTGCCAAAGAGAGCCTGGCCCAGACATCCAG CACCATCACGGAGAGCCTCATGGGGATCAGCAGGATGATGTCCCAGCAGGTCCAGCAGAG CGAGGAGGCCATGCAGACGCTAGTCAATTCTTCCCGGACTATCCTGGATGCAAATGAAGA ATTTAAGTCCATGTCGGGGACCATCCAGTTAGGACGGAAGCTCATCACAAAATATAATCG CCGAGAGCTGACGGACAAGCTTCTCATTTTCCTTGCACTGGCCCTCTTTCTTGCGACAGT CCTCTATATTGTGAAAAAGAGGCTCTTTCCGTTTTTGTGAGATCTGAGAGCTGCCACCTT TTGCCCTCTGAGCTCCAACATCAAGATCCAGCCAACCAGACCGGCCCACGCCCCCTAGTC CGCTCCAGTCGCTCCACAGGTCAGGTGGAGACACAGCCCATGGGTTTCTGCAGGTGGCTA AAGTGTAAGGGGCAAGCAGAGCAAGGGCAGAGAGGCCTGTCATCGGGACACCTGCAGGGA CATGAGGACTCCAAGAGCCGTCGCACACTGTGGGTGGCTGCTGCATGGAGCACTGGAGCC AGCTCCGGGATTTGGTGTCCCTCCTGCCTCTCCCTCTCCCACTGTGGCCTTCATGCCAGG TCTGGTGAAGGGAAGAGAGGAGGGAAGGGAAGGAGGAGGAGGAAAATACATCCATTCCTT GAATAAAGTTGACTATTTAATAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 946-1061, + strand, RNAz p=0.851516 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 946-1061, + strand, RNAz p=0.851516 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_001205, + |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 96-199, gnl|bosTau2|chr3 (61228323-61228220) | |
| 96-199, gnl|canFam2|chr4 (42492508-42492390) | |
| 96-199, gnl|danRer3|chr19 (60295431-60295318) | |
| 96-199, gnl|dasNov1|scaffold_219238 (381-264) | |
| 96-199, gnl|echTel1|scaffold_322705 (78471-78590) | |
| 96-199, gnl|fr1|chrUn (44062326-44062429) | |
| 96-199, gnl|galGal2|chr13 (8272294-8272411) | |
| 96-199, gnl|hg17|chr5 (172506456-172506575) | |
| 96-199, gnl|Hg17|chr5 (172506473-172506573) | |
| 96-199, gnl|loxAfr1|scaffold_73674 (5452-5549) | |
| 96-199, gnl|mm7|chr17 (24968336-24968454) | |
| 96-199, gnl|Mm7|chr17 (24968353-24968480) | |
| 96-199, gnl|monDom2|scaffold_6 (27397829-27397712) | |
| 96-199, gnl|oryCun1|scaffold_211661 (53834-53716) | |
| 96-199, gnl|panTro1|chr4 (179885702-179885820) | |
| 96-199, gnl|rheMac2|chr6 (169554754-169554872) | |
| 96-199, gnl|rn3|chr10 (16658769-16658651) | |
| 96-199, gnl|xenTro1|scaffold_21 (579013-579127) | |
| 383-501, gnl|bosTau2|chr3 (61221780-61221662) | |
| 383-501, gnl|Hg17|chr5 (172519540-172519658) | |
| 383-501, gnl|Mm7|chr17 (24975838-24975956) | |
| 502-1104, gnl|bosTau2|chr3 (61218124-61217546) | |
| 502-1104, gnl|Hg17|chr5 (172523332-172523969) | |
| 502-1104, gnl|Mm7|chr17 (24976853-24977439) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 96-199, gnl|bosTau2|chr3 (61228323-61228220) | |
| 96-199, gnl|canFam2|chr4 (42492508-42492390) | |
| 96-199, gnl|danRer3|chr19 (60295431-60295318) | |
| 96-199, gnl|dasNov1|scaffold_219238 (381-264) | |
| 96-199, gnl|echTel1|scaffold_322705 (78471-78590) | |
| 96-199, gnl|fr1|chrUn (44062326-44062429) | |
| 96-199, gnl|galGal2|chr13 (8272294-8272411) | |
| 96-199, gnl|hg17|chr5 (172506456-172506575) | |
| 96-199, gnl|Hg17|chr5 (172506473-172506573) | |
| 96-199, gnl|loxAfr1|scaffold_73674 (5452-5549) | |
| 96-199, gnl|mm7|chr17 (24968336-24968454) | |
| 96-199, gnl|Mm7|chr17 (24968353-24968480) | |
| 96-199, gnl|monDom2|scaffold_6 (27397829-27397712) | |
| 96-199, gnl|oryCun1|scaffold_211661 (53834-53716) | |
| 96-199, gnl|panTro1|chr4 (179885702-179885820) | |
| 96-199, gnl|rheMac2|chr6 (169554754-169554872) | |
| 96-199, gnl|rn3|chr10 (16658769-16658651) | |
| 96-199, gnl|xenTro1|scaffold_21 (579013-579127) | |
| 383-501, gnl|bosTau2|chr3 (61221780-61221662) | |
| 383-501, gnl|Hg17|chr5 (172519540-172519658) | |
| 383-501, gnl|Mm7|chr17 (24975838-24975956) | |
| 502-1104, gnl|bosTau2|chr3 (61218124-61217546) | |
| 502-1104, gnl|Hg17|chr5 (172523332-172523969) | |
| 502-1104, gnl|Mm7|chr17 (24976853-24977439) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.161186) | |
| eli (0.151814) |