Non-Coding RNA Search

Ss1.1-Liv1-LVR010045B02.5

Sequence:


               
               CAGAGCCCAGCGACAGGCGGGCTGCCGCTGGGGGCCCCTGAGGCTTCGGGGGCCATGGCT
GGGGTTGCGTGCTTGGGGAAGGCTGCGGACACCGATGAATGGTGCGACAGCGGCTTGGGC
TCTCTGGGTCCGGACGCAGCGGCCCCCGGAGGACCAGGCCTAGGCGCGGAGCTGGGTCCG
GGACTATCGTGGGCGCCCCTCGTCTTCGGCTACGTCACTGAGGATGGCGACACGGCACTG
CACTTGGCGGTGATTCATCAGCATGAGCCCTTCCTGGATTTCCTCCTGGGCTTTGCTGCT
GGCACTGAGTACCTGGACCTGCAGAATGACCTGGGCCAGACAGCCCTGCACCTGGCAGCC
ATCCTGGGGGAGGCATCCACAGTAGAGAAGCTGTACGCCGCGGGTGCCAGTTTGCTGGTG
GCAGAGCGTGGGGGCCACACAGCGCTGCACCTGGCCTGCCGCGTCCGGGCACACGCCTGC
GCTTGCGTGCTGCTCCAGCCCCGCCCCCGGCGCCCCAGGGGAGCCCCCAACACCTACCTC
GCTCAGGGCTCTGACCATACCCCTGACACGGACCACACCCCGGTGGCCTTGTACCCTGAA
CCTGACCTGGAGAAGGAAGAGGATGAGAGTGAAGAGGACTGGAAACTGCAGCTGGAGGCT
GAAAACTATGAAGGCCACACCCCACTCCACGTGGCTGTCATCCACAAAGATGCCGAGATG
GTCCGACTGCTCCGAGAGGCTGGAGCCGACCTCAACAAACCGGAGCCCACGTGCGGTCGG
AGCCCCTTGCACTTGGCAGTGGAGGCCCAAGCGGCTGACGTGCTGGAGCTTCTCCTGAAG
GCCGGTGCCGACCCTGCTGCCCGTATGTACGGTGGCCGCACTCCCCTTGGCAGTGCCACG
CTCCGGCCCAACCCCGTCCTCGCCCGCCTCCTCCGTGCACACGGCGCCCCTGAGCCCGAG
GACGAGGACAAGCCCGGTCCTTGCACCAGCAGCAGCGACAGCGACAGCGGGGATGAAGGC
GATGAATACGACGACATCGTGGTCCACAGCGCCCGGAGCCCCAACCAGCTACCTCCCACG
CCAGCCTCAAAACCACTCCCTGACGACCCCATCTGACTTCATAGAGTTTCCAACTTAATA
AAACCCCAGTTCTGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGCCCAGCGACAGGCGGGCTGCCGCTGGGGGCCCCTGAGGCTTCGGGGGCCATGGCT
GGGGTTGCGTGCTTGGGGAAGGCTGCGGACACCGATGAATGGTGCGACAGCGGCTTGGGC
TCTCTGGGTCCGGACGCAGCGGCCCCCGGAGGACCAGGCCTAGGCGCGGAGCTGGGTCCG
GGACTATCGTGGGCGCCCCTCGTCTTCGGCTACGTCACTGAGGATGGCGACACGGCACTG
CACTTGGCGGTGATTCATCAGCATGAGCCCTTCCTGGATTTCCTCCTGGGCTTTGCTGCT
GGCACTGAGTACCTGGACCTGCAGAATGACCTGGGCCAGACAGCCCTGCACCTGGCAGCC
ATCCTGGGGGAGGCATCCACAGTAGAGAAGCTGTACGCCGCGGGTGCCAGTTTGCTGGTG
GCAGAGCGTGGGGGCCACACAGCGCTGCACCTGGCCTGCCGCGTCCGGGCACACGCCTGC
GCTTGCGTGCTGCTCCAGCCCCGCCCCCGGCGCCCCAGGGGAGCCCCCAACACCTACCTC
GCTCAGGGCTCTGACCATACCCCTGACACGGACCACACCCCGGTGGCCTTGTACCCTGAA
CCTGACCTGGAGAAGGAAGAGGATGAGAGTGAAGAGGACTGGAAACTGCAGCTGGAGGCT
GAAAACTATGAAGGCCACACCCCACTCCACGTGGCTGTCATCCACAAAGATGCCGAGATG
GTCCGACTGCTCCGAGAGGCTGGAGCCGACCTCAACAAACCGGAGCCCACGTGCGGTCGG
AGCCCCTTGCACTTGGCAGTGGAGGCCCAAGCGGCTGACGTGCTGGAGCTTCTCCTGAAG
GCCGGTGCCGACCCTGCTGCCCGTATGTACGGTGGCCGCACTCCCCTTGGCAGTGCCACG
CTCCGGCCCAACCCCGTCCTCGCCCGCCTCCTCCGTGCACACGGCGCCCCTGAGCCCGAG
GACGAGGACAAGCCCGGTCCTTGCACCAGCAGCAGCGACAGCGACAGCGGGGATGAAGGC
GATGAATACGACGACATCGTGGTCCACAGCGCCCGGAGCCCCAACCAGCTACCTCCCACG
CCAGCCTCAAAACCACTCCCTGACGACCCCATCTGACTTCATAGAGTTTCCAACTTAATA
AAACCCCAGTTCTGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               IKBB_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               IKBB_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-118, + strand, RNAz p=0.551625

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, + strand, RNAz p=0.551625

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001001716, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001001716, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-243, gnl|bosTau2|chr18 (42128296-42128054)
               

               
               1-243, gnl|Hg17|chr19 (44082459-44082701)
               

               
               1-243, gnl|Mm7|chr7 (25700612-25700369)
               


               
               337-674, gnl|bosTau2|chr18 (42094948-42095285)
               

               
               337-674, gnl|Hg17|chr19 (44087679-44088016)
               

               
               337-674, gnl|Mm7|chr7 (25696074-25695737)
               


               
               762-1050, gnl|bosTau2|chr18 (42096285-42096578)
               

               
               762-1050, gnl|Hg17|chr19 (44089878-44090171)
               

               
               762-1050, gnl|Mm7|chr7 (25694233-25693938)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-243, gnl|bosTau2|chr18 (42128296-42128054)
               

               
               1-243, gnl|Hg17|chr19 (44082459-44082701)
               

               
               1-243, gnl|Mm7|chr7 (25700612-25700369)
               


               
               337-674, gnl|bosTau2|chr18 (42094948-42095285)
               

               
               337-674, gnl|Hg17|chr19 (44087679-44088016)
               

               
               337-674, gnl|Mm7|chr7 (25696074-25695737)
               


               
               762-1050, gnl|bosTau2|chr18 (42096285-42096578)
               

               
               762-1050, gnl|Hg17|chr19 (44089878-44090171)
               

               
               762-1050, gnl|Mm7|chr7 (25694233-25693938)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cty (0.31224)
               

               
               jej (0.296765)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 14 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.31224)
               

               
               jej (0.296765)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	1-243, gnl\|bosTau2\|chr18 (42128296-42128054)
	1-243, gnl\|Hg17\|chr19 (44082459-44082701)
	1-243, gnl\|Mm7\|chr7 (25700612-25700369)

	337-674, gnl\|bosTau2\|chr18 (42094948-42095285)
	337-674, gnl\|Hg17\|chr19 (44087679-44088016)
	337-674, gnl\|Mm7\|chr7 (25696074-25695737)

	762-1050, gnl\|bosTau2\|chr18 (42096285-42096578)
	762-1050, gnl\|Hg17\|chr19 (44089878-44090171)
	762-1050, gnl\|Mm7\|chr7 (25694233-25693938)

	cty (0.31224)
	jej (0.296765)
	mas (0.210305)
	fcc (0.197785)
	nje (0.16592)
	nco (0.161734)
	csp (0.161186)
	hyp (0.142837)
	pla (0.133672)
	ute (0.132784)
	ese (0.126502)
	eep (0.122564)
	med (0.116252)
	ldo (0.0970026)