Ss1.1-Liv1-LVR010045D11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAGTGCTCTGCATGGCCTGGTCTTAGGTGCTTGGTGCGGTGAGGAGCCCAGTGTGCAC TGAGGCAGCCATGGGTCTGCTGACTGGGGGTTTACTGGGGATCCTGGCCTTGGCCATGGT CATCTTCCTGCTCCTGGTGGACTTGATGCACCGGCGCTCACGCTGGGCTCCACGCTACCC ACCGGGCCCCATGCCACTGCCTGGGCTGGGTAACCTGCTACAAGTGAACTTCCAAGACCC ACGTCTCAGCTTTATCCAGCTGCGGCGCCGCTTCGGGGATGTATTCAGCCTACAGCAGAT CTGGAGGCCCGTGGTCGTGCTCAATGGGCTGGCGGCTGTGCGGGAGGCGCTGGTGTCCCA CAGCCATGAAACCTCCGACCGCCCACCTGTGTTCATCTTAGAGCACCTGGGTTACGGGCC GCGCTCCGAAGGAGTGATCCTGGCGCGCTATGGGAAAGCGTGGCGCGAGCAGCGGCGCTT CTCGGTGTCCACCTTGCGCAACTTTGGCCTGGGCAAGAAGTCGTTGGAGGAGTGGGTGAC CCAAGAGGCCTCGTGCCTTTGTGCCGCCTTCGCCGACCAGGCTGGACGCCCCTTTAGCCC TAACAACCTTCTGAATAAAGCGGTGAGCAACGTGATCGCCTCCCTCACCTTCGCGCGCCG CTTCGAGTACAACGACCCTCGCATGCTCAAGCTTCTGGACCTAGTGTTGGAAGGACTGAA GGAGGAAGTGGGCCTCATGCGCCAGGTGCTGGAAGCAATGCCGGTTCTCAGGCATATCCC GGGGCTGTGTGCCAAGCTCTTCCCAAGGCAGAAGGCCTTCTTGGTCATGATAGATGAGCT GATCACAGAGCACAAGATGACCCGGGACCTGGCCCAGCCCCCCCGAGACTTGACGGATGC CTTCCTGGACGAAATGAAAGAGGCCAAGGGGAACCCCGAGAGCAGCTTCAATGATGAGAA CCTCCGCCTGGTGGTGGCTGACCTGTTCTCCGCTGGGATGATCACCACCTCGACCACGCT GGCCTGGGCTCTCCTCCTCATGATCCTGCACCCAGACGTGCAGCGACGCGTCCAACAGGA AATCGATGAGGTGATAGGGCACGTGCGGCAACCGGAGATAAAGGATCAGGCCCTCATGCC CTTCACCTTGGCCGTGCTCCATGAGGTGCAGCGCTTTGGGGACATCGTCCCACTGGGCGT GGCCCACATGACATCTTGTGACATTGAAGTGCAGGGTTTCCTCATCCCCAAGGGGACCAC ACTTATCACCAACCTGACGTCAGTGCTGAAGGACGAGACTGTCTGGAAGAAGCCCTTCCG CTTCTATCCAGAGCACTTCCTGGACGCCCAGGGCCGCTTCACCAAGCAGGAGGCCTTCAT GCCCTTCTCAGCAGGCCGCCGCTCTTGCCTCGGGGAGCCCCTGGCCCGCATGGAGCTCTT CCTCTTCTTCACCACCCTCCTGCAGCGCTTCAGCTTCTCGGTGCCCACAGGACAGCCTCG CCCCAGCGACCACGGTGTCTTTGCCTTCCTGCTGTTCCCATCCCCCTACCAGCTCTGTGC TGTGCCCCGCTAGGGGGAGGCACCATGCCCCCAGCCTTCGCTTCAGCAGTAGCCCTGGCA TGCAATAAAGCTGTCCGGCAGCTCCAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAGTGCTCTGCATGGCCTGGTCTTAGGTGCTTGGTGCGGTGAGGAGCCCAGTGTGCAC TGAGGCAGCCATGGGTCTGCTGACTGGGGGTTTACTGGGGATCCTGGCCTTGGCCATGGT CATCTTCCTGCTCCTGGTGGACTTGATGCACCGGCGCTCACGCTGGGCTCCACGCTACCC ACCGGGCCCCATGCCACTGCCTGGGCTGGGTAACCTGCTACAAGTGAACTTCCAAGACCC ACGTCTCAGCTTTATCCAGCTGCGGCGCCGCTTCGGGGATGTATTCAGCCTACAGCAGAT CTGGAGGCCCGTGGTCGTGCTCAATGGGCTGGCGGCTGTGCGGGAGGCGCTGGTGTCCCA CAGCCATGAAACCTCCGACCGCCCACCTGTGTTCATCTTAGAGCACCTGGGTTACGGGCC GCGCTCCGAAGGAGTGATCCTGGCGCGCTATGGGAAAGCGTGGCGCGAGCAGCGGCGCTT CTCGGTGTCCACCTTGCGCAACTTTGGCCTGGGCAAGAAGTCGTTGGAGGAGTGGGTGAC CCAAGAGGCCTCGTGCCTTTGTGCCGCCTTCGCCGACCAGGCTGGACGCCCCTTTAGCCC TAACAACCTTCTGAATAAAGCGGTGAGCAACGTGATCGCCTCCCTCACCTTCGCGCGCCG CTTCGAGTACAACGACCCTCGCATGCTCAAGCTTCTGGACCTAGTGTTGGAAGGACTGAA GGAGGAAGTGGGCCTCATGCGCCAGGTGCTGGAAGCAATGCCGGTTCTCAGGCATATCCC GGGGCTGTGTGCCAAGCTCTTCCCAAGGCAGAAGGCCTTCTTGGTCATGATAGATGAGCT GATCACAGAGCACAAGATGACCCGGGACCTGGCCCAGCCCCCCCGAGACTTGACGGATGC CTTCCTGGACGAAATGAAAGAGGCCAAGGGGAACCCCGAGAGCAGCTTCAATGATGAGAA CCTCCGCCTGGTGGTGGCTGACCTGTTCTCCGCTGGGATGATCACCACCTCGACCACGCT GGCCTGGGCTCTCCTCCTCATGATCCTGCACCCAGACGTGCAGCGACGCGTCCAACAGGA AATCGATGAGGTGATAGGGCACGTGCGGCAACCGGAGATAAAGGATCAGGCCCTCATGCC CTTCACCTTGGCCGTGCTCCATGAGGTGCAGCGCTTTGGGGACATCGTCCCACTGGGCGT GGCCCACATGACATCTTGTGACATTGAAGTGCAGGGTTTCCTCATCCCCAAGGGGACCAC ACTTATCACCAACCTGACGTCAGTGCTGAAGGACGAGACTGTCTGGAAGAAGCCCTTCCG CTTCTATCCAGAGCACTTCCTGGACGCCCAGGGCCGCTTCACCAAGCAGGAGGCCTTCAT GCCCTTCTCAGCAGGCCGCCGCTCTTGCCTCGGGGAGCCCCTGGCCCGCATGGAGCTCTT CCTCTTCTTCACCACCCTCCTGCAGCGCTTCAGCTTCTCGGTGCCCACAGGACAGCCTCG CCCCAGCGACCACGGTGTCTTTGCCTTCCTGCTGTTCCCATCCCCCTACCAGCTCTGTGC TGTGCCCCGCTAGGGGGAGGCACCATGCCCCCAGCCTTCGCTTCAGCAGTAGCCCTGGCA TGCAATAAAGCTGTCCGGCAGCTCCAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-265, gnl|bosTau2|chr5 (68564350-68564088) | |
| 1-265, gnl|canFam2|chr10 (26319451-26318999) | |
| 1-265, gnl|dasNov1|scaffold_43460 (9955-9450) | |
| 1-265, gnl|echTel1|scaffold_285445 (9071-8636) | |
| 1-265, gnl|hg17|chr22 (40864700-40865149) | |
| 1-265, gnl|Hg17|chr22 (40865048-40864777) | |
| 1-265, gnl|mm7|chr15 (82478080-82478490) | |
| 1-265, gnl|oryCun1|scaffold_174353 (37744-37286) | |
| 1-265, gnl|panTro1|chr23 (41121312-41121760) | |
| 1-265, gnl|rheMac2|chr10 (86100123-86100571) | |
| 1-265, gnl|rn3|chr7 (120808023-120808445) | |
| 425-585, gnl|bosTau2|chr5 (68562684-68562524) | |
| 425-585, gnl|Hg17|chr22 (40863386-40863226) | |
| 425-585, gnl|Mm7|chr15 (82877264-82877104) | |
| 743-932, gnl|bosTau2|chr5 (68561876-68561688) | |
| 743-932, gnl|Hg17|chr22 (40862555-40862366) | |
| 743-932, gnl|Mm7|chr15 (82876234-82876034) | |
| 1059-1253, gnl|bosTau2|chr5 (68561186-68560993) | |
| 1059-1253, gnl|canFam2|chr10 (26322255-26322041) | |
| 1059-1253, gnl|danRer3|chr20 (27144867-27145064) | |
| 1059-1253, gnl|dasNov1|scaffold_43460 (12431-12210) | |
| 1059-1253, gnl|echTel1|scaffold_285445 (1720-1500) | |
| 1059-1253, gnl|fr1|chrUn (97605225-97605032) | |
| 1059-1253, gnl|hg17|chr22 (40861635-40861856) | |
| 1059-1253, gnl|Hg17|chr22 (40861852-40861659) | |
| 1059-1253, gnl|loxAfr1|scaffold_1745 (73161-73382) | |
| 1059-1253, gnl|mm7|chr15 (82474367-82474588) | |
| 1059-1253, gnl|Mm7|chr15 (82875559-82875366) | |
| 1059-1253, gnl|monDom2|scaffold_119 (3416910-3416692) | |
| 1059-1253, gnl|oryCun1|scaffold_174353 (39825-39607) | |
| 1059-1253, gnl|panTro1|chr23 (41127860-41128078) | |
| 1059-1253, gnl|rheMac2|chr10 (86112861-86113082) | |
| 1059-1253, gnl|rn3|chr7 (120804775-120804996) | |
| 1059-1253, gnl|tetNig1|chr3 (9921490-9921296) | |
| 1059-1253, gnl|xenTro1|scaffold_1844 (36977-37196) | |
| 1373-1646, gnl|bosTau2|chr5 (68560337-68560065) | |
| 1373-1646, gnl|Hg17|chr22 (40860985-40860713) | |
| 1373-1646, gnl|Mm7|chr15 (82874770-82874515) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-265, gnl|bosTau2|chr5 (68564350-68564088) | |
| 1-265, gnl|canFam2|chr10 (26319451-26318999) | |
| 1-265, gnl|dasNov1|scaffold_43460 (9955-9450) | |
| 1-265, gnl|echTel1|scaffold_285445 (9071-8636) | |
| 1-265, gnl|hg17|chr22 (40864700-40865149) | |
| 1-265, gnl|Hg17|chr22 (40865048-40864777) | |
| 1-265, gnl|mm7|chr15 (82478080-82478490) | |
| 1-265, gnl|oryCun1|scaffold_174353 (37744-37286) | |
| 1-265, gnl|panTro1|chr23 (41121312-41121760) | |
| 1-265, gnl|rheMac2|chr10 (86100123-86100571) | |
| 1-265, gnl|rn3|chr7 (120808023-120808445) | |
| 425-585, gnl|bosTau2|chr5 (68562684-68562524) | |
| 425-585, gnl|Hg17|chr22 (40863386-40863226) | |
| 425-585, gnl|Mm7|chr15 (82877264-82877104) | |
| 743-932, gnl|bosTau2|chr5 (68561876-68561688) | |
| 743-932, gnl|Hg17|chr22 (40862555-40862366) | |
| 743-932, gnl|Mm7|chr15 (82876234-82876034) | |
| 1059-1253, gnl|bosTau2|chr5 (68561186-68560993) | |
| 1059-1253, gnl|canFam2|chr10 (26322255-26322041) | |
| 1059-1253, gnl|danRer3|chr20 (27144867-27145064) | |
| 1059-1253, gnl|dasNov1|scaffold_43460 (12431-12210) | |
| 1059-1253, gnl|echTel1|scaffold_285445 (1720-1500) | |
| 1059-1253, gnl|fr1|chrUn (97605225-97605032) | |
| 1059-1253, gnl|hg17|chr22 (40861635-40861856) | |
| 1059-1253, gnl|Hg17|chr22 (40861852-40861659) | |
| 1059-1253, gnl|loxAfr1|scaffold_1745 (73161-73382) | |
| 1059-1253, gnl|mm7|chr15 (82474367-82474588) | |
| 1059-1253, gnl|Mm7|chr15 (82875559-82875366) | |
| 1059-1253, gnl|monDom2|scaffold_119 (3416910-3416692) | |
| 1059-1253, gnl|oryCun1|scaffold_174353 (39825-39607) | |
| 1059-1253, gnl|panTro1|chr23 (41127860-41128078) | |
| 1059-1253, gnl|rheMac2|chr10 (86112861-86113082) | |
| 1059-1253, gnl|rn3|chr7 (120804775-120804996) | |
| 1059-1253, gnl|tetNig1|chr3 (9921490-9921296) | |
| 1059-1253, gnl|xenTro1|scaffold_1844 (36977-37196) | |
| 1373-1646, gnl|bosTau2|chr5 (68560337-68560065) | |
| 1373-1646, gnl|Hg17|chr22 (40860985-40860713) | |
| 1373-1646, gnl|Mm7|chr15 (82874770-82874515) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cli (2.44499) | |
| fli (0.608643) | |
| cki (0.495704) | |
| pla (0.133672) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (2.44499) | |
| fli (0.608643) | |
| cki (0.495704) | |
| pla (0.133672) |