Ss1.1-Liv1-LVR010045G04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCGGCGCTGTGGCGCTAGGCCGCCTTCATTCCGCGGGCCACGGATAAAGTGCCGGTGG ACAAGGGCGCGCGAAGGGCCGCCAGCCACGCGGGGTCGGCGAGACGCCTGAGCGTCCGAG TCGTGTCGTGACAACGATTCTGGTGGGTGTCTCCGCGACAGCAGGTGCAGCCGCTTCAGC CCCAAGCGGGCTCGGCGGCTGCCTGGCGAGTCTCTGCTCGCGCCCAGCCTTTTCCTTCCT GGACCCAACGCTAAGCAGCGACGCTGAGCCGACCGCCGGAGCGGCGGGCAATGGCGGCCT CGACGGCCTCGCACCGGCCCATCAAGGGGATCTTGAAGAACAAGAGTTCTACGACTTCCT CTATGGTGGCCTCGGCCGAACAGCCCGGCAGGAGTGTTGACGAAGAGCTGAGTAAAAAAT CCCAGAAGTGGGATGAAATGAACATCCTGGCGACATATCATCCAGCAGACAAAGACTATG GTTTAATGAAAATAGATGAACCTAGCACTCCTTACCATAGTATGGTGGGTGATGATGAAG ATGCATTGAGTGACTCAGAAACCACTGAAGCCCTGTCCCCAGATATCTTAGCTAAGAAAT TAATTGCTGCTGAAGGCGCAGAGCCGAAGTACCGGGTTCATGAACAAGAAAGTAGTGGAG ATGAGGATACTGACCTCTCACCTGAAGAACAAGAAAAAAAGCGACAGTTTGAAATGAAAA GGAAACTTCACTACAATGAAGGACTGAATATTAAATTAGCTAGACAATTAATTTCAAAAG ACCTACATGATGATGAGGAGGATGAAGAAATGTCAGAGACTGCAGCTGGAGAAAGCATGA ATACAGAAGAATCAAATCAAGGATCTGCAAGTGACCAACTGCAAAACAAATCACAGAGTT CATAGAAGAGATTTGCTCAACACTGTAATTGCCACATACAAACCCTGTTACTATAATATA CTGCTTCTTGTTCTCTACAATTCATGACTTAAGTACCAAAATGCATACCAGTTATTATAT ATTGCCAATAATTAAATAACTTTAGAGACTAATTAGACTGAAAATGCCTAATTGATACAT ATATTCTTGTGCCTAATACTTCACCACAAATACAGTATAGTGTCATCAGTCCAGTCCAAA ACTATATTACTTTTGTAAGAACACTGGCTAATTTGTATCAGATATGTAGCTTTTTATGTT TTAGAAGTTATCTTGGGTGGTGAGGGGATCTAATTTATTTTCTTCACTTCTAGATGTGAT AGCTCTTATAAAAGGTTGAGTTTTACTAAAAATCAAAATCCATTTGGAACAACCGATCAT ACGCTGATAGATATTCAGTTTGAAAAGTATTTTAACACATGCCCTTCTGTTTAATTGAAA AGGATTATAAGAGTTACAGTTGCATTTCTGGCATACTGTCTTTAAAGTTCCTGTTGAGTT TCTTTTATGTTTAAAGGAAAGGATTAAACTTTATCTCATCAAAACTAGCTGTTTCCAAAA ATAAATTATCAGGTTAAACTTGCTCTAACGTCTGCTCTTACTTTTTGTGTACACTCCATG GGCAGACTTCAGATCAGTTTTTAAATACATATGATATAGTCTCCACATTCCCTTTGTATA CCTGTCTAAATCTCCCGCCTTTGTTTCTTACTCCTTTCCACATATACGCACACAATCCTT TACCTTTATAAAGGGTCATAAAGATTGTCATGATTTTAGTAACTTTTCCTTCTCTCACAT ATCCTGTCATTTGCTACAACAATGAAATCTTATTTTGACTATCAATGCCTATTGGTTTTT CTAATACATGGAGAAAATAGATTGAATAGCAGCAGTACTATAGATGGGAAATACAATTCA ACTGTGGATTTCTACAGTTCTCTGATTTACAGCTTGCTAGTTAAAGTGCTATTATTAGTT TATTGTTTGACTTAATTAGACCTTAGAAAAACAACTGAGAGTTTTTATTTTTTGCATGAT GAGAGAATTGTGTGTAACCAGTGATGATAGTTCCTAAATGTATAGACAGAAGTAATTCTG AACACATTTTAATTTAAAAACTTTAAATAGTCCCTGCTTTAAGGGAAAATGATAATGTAT ACTATGACAAATGTACTTTATTCTTTTAACACAGTAAGATTTGGACTTTTTCCCCTGAAA TGAAGTGCAGTTCCTATATATCTTGGTTTAGTGATGGTTTCATTTCCAGTCAATTATTTG TGTCTTAATTTTTTTGTTAGCACCAAAAGAATTCATTATATGAACAGACTTTTAAAATAA CTTCTGTATATTGTGTATATGAATTGGCTTTTATTCAACAGCTTATCTTCCACTTGCAAG TTTATGGAAATATCAATATGTCAAAATAAATAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCGGCGCTGTGGCGCTAGGCCGCCTTCATTCCGCGGGCCACGGATAAAGTGCCGGTGG ACAAGGGCGCGCGAAGGGCCGCCAGCCACGCGGGGTCGGCGAGACGCCTGAGCGTCCGAG TCGTGTCGTGACAACGATTCTGGTGGGTGTCTCCGCGACAGCAGGTGCAGCCGCTTCAGC CCCAAGCGGGCTCGGCGGCTGCCTGGCGAGTCTCTGCTCGCGCCCAGCCTTTTCCTTCCT GGACCCAACGCTAAGCAGCGACGCTGAGCCGACCGCCGGAGCGGCGGGCAATGGCGGCCT CGACGGCCTCGCACCGGCCCATCAAGGGGATCTTGAAGAACAAGAGTTCTACGACTTCCT CTATGGTGGCCTCGGCCGAACAGCCCGGCAGGAGTGTTGACGAAGAGCTGAGTAAAAAAT CCCAGAAGTGGGATGAAATGAACATCCTGGCGACATATCATCCAGCAGACAAAGACTATG GTTTAATGAAAATAGATGAACCTAGCACTCCTTACCATAGTATGGTGGGTGATGATGAAG ATGCATTGAGTGACTCAGAAACCACTGAAGCCCTGTCCCCAGATATCTTAGCTAAGAAAT TAATTGCTGCTGAAGGCGCAGAGCCGAAGTACCGGGTTCATGAACAAGAAAGTAGTGGAG ATGAGGATACTGACCTCTCACCTGAAGAACAAGAAAAAAAGCGACAGTTTGAAATGAAAA GGAAACTTCACTACAATGAAGGACTGAATATTAAATTAGCTAGACAATTAATTTCAAAAG ACCTACATGATGATGAGGAGGATGAAGAAATGTCAGAGACTGCAGCTGGAGAAAGCATGA ATACAGAAGAATCAAATCAAGGATCTGCAAGTGACCAACTGCAAAACAAATCACAGAGTT CATAGAAGAGATTTGCTCAACACTGTAATTGCCACATACAAACCCTGTTACTATAATATA CTGCTTCTTGTTCTCTACAATTCATGACTTAAGTACCAAAATGCATACCAGTTATTATAT ATTGCCAATAATTAAATAACTTTAGAGACTAATTAGACTGAAAATGCCTAATTGATACAT ATATTCTTGTGCCTAATACTTCACCACAAATACAGTATAGTGTCATCAGTCCAGTCCAAA ACTATATTACTTTTGTAAGAACACTGGCTAATTTGTATCAGATATGTAGCTTTTTATGTT TTAGAAGTTATCTTGGGTGGTGAGGGGATCTAATTTATTTTCTTCACTTCTAGATGTGAT AGCTCTTATAAAAGGTTGAGTTTTACTAAAAATCAAAATCCATTTGGAACAACCGATCAT ACGCTGATAGATATTCAGTTTGAAAAGTATTTTAACACATGCCCTTCTGTTTAATTGAAA AGGATTATAAGAGTTACAGTTGCATTTCTGGCATACTGTCTTTAAAGTTCCTGTTGAGTT TCTTTTATGTTTAAAGGAAAGGATTAAACTTTATCTCATCAAAACTAGCTGTTTCCAAAA ATAAATTATCAGGTTAAACTTGCTCTAACGTCTGCTCTTACTTTTTGTGTACACTCCATG GGCAGACTTCAGATCAGTTTTTAAATACATATGATATAGTCTCCACATTCCCTTTGTATA CCTGTCTAAATCTCCCGCCTTTGTTTCTTACTCCTTTCCACATATACGCACACAATCCTT TACCTTTATAAAGGGTCATAAAGATTGTCATGATTTTAGTAACTTTTCCTTCTCTCACAT ATCCTGTCATTTGCTACAACAATGAAATCTTATTTTGACTATCAATGCCTATTGGTTTTT CTAATACATGGAGAAAATAGATTGAATAGCAGCAGTACTATAGATGGGAAATACAATTCA ACTGTGGATTTCTACAGTTCTCTGATTTACAGCTTGCTAGTTAAAGTGCTATTATTAGTT TATTGTTTGACTTAATTAGACCTTAGAAAAACAACTGAGAGTTTTTATTTTTTGCATGAT GAGAGAATTGTGTGTAACCAGTGATGATAGTTCCTAAATGTATAGACAGAAGTAATTCTG AACACATTTTAATTTAAAAACTTTAAATAGTCCCTGCTTTAAGGGAAAATGATAATGTAT ACTATGACAAATGTACTTTATTCTTTTAACACAGTAAGATTTGGACTTTTTCCCCTGAAA TGAAGTGCAGTTCCTATATATCTTGGTTTAGTGATGGTTTCATTTCCAGTCAATTATTTG TGTCTTAATTTTTTTGTTAGCACCAAAAGAATTCATTATATGAACAGACTTTTAAAATAA CTTCTGTATATTGTGTATATGAATTGGCTTTTATTCAACAGCTTATCTTCCACTTGCAAG TTTATGGAAATATCAATATGTCAAAATAAATAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1740-1858, - strand, RNAz p=0.994059 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1740-1858, - strand, RNAz p=0.994059 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 4-412, gnl|bosTau2|chr1 (44598005-44597594) | |
| 4-412, gnl|Hg17|chr3 (196751433-196751024) | |
| 4-412, gnl|Mm7|chr16 (30949677-30949275) | |
| 692-862, gnl|bosTau2|chr1 (44581983-44581813) | |
| 692-862, gnl|canFam2|chr33 (33591363-33591479) | |
| 692-862, gnl|canFam2|chr33 (33591363-33591527) | |
| 692-862, gnl|dasNov1|scaffold_38663 (4296-4412) | |
| 692-862, gnl|dasNov1|scaffold_38663 (4296-4463) | |
| 692-862, gnl|echTel1|scaffold_290805 (78005-77883) | |
| 692-862, gnl|echTel1|scaffold_290805 (78005-77835) | |
| 692-862, gnl|fr1|chrUn (160254733-160254643) | |
| 692-862, gnl|hg17|chr21 (36181764-36181876) | |
| 692-862, gnl|Hg17|chr3 (196727281-196727111) | |
| 692-862, gnl|hg17|chr7 (139446108-139446278) | |
| 692-862, gnl|loxAfr1|scaffold_22955 (5033-5155) | |
| 692-862, gnl|loxAfr1|scaffold_22955 (5033-5203) | |
| 692-862, gnl|Mm7|chr16 (30932937-30932765) | |
| 692-862, gnl|mm7|chr17 (6200041-6200208) | |
| 692-862, gnl|mm7|chr19 (30238297-30238181) | |
| 692-862, gnl|monDom2|scaffold_4 (60807868-60807984) | |
| 692-862, gnl|monDom2|scaffold_4 (60807868-60808005) | |
| 692-862, gnl|oryCun1|scaffold_132859 (10920-10804) | |
| 692-862, gnl|oryCun1|scaffold_135531 (6042-6209) | |
| 692-862, gnl|panTro1|chr22 (36180354-36180466) | |
| 692-862, gnl|panTro1|chr6 (142188616-142188787) | |
| 692-862, gnl|rheMac2|chr3 (10680190-10680077) | |
| 692-862, gnl|rheMac2|chr3 (177791972-177792142) | |
| 692-862, gnl|rn3|chr11 (71395703-71395819) | |
| 692-862, gnl|rn3|chrX (11352296-11352135) | |
| 692-862, gnl|tetNig1|chr1 (12118093-12118201) | |
| 865-2376, gnl|bosTau2|chr1 (44580491-44578984) | |
| 865-2376, gnl|Hg17|chr3 (196725031-196723421) | |
| 865-2376, gnl|Mm7|chr16 (30929156-30927671) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-412, gnl|bosTau2|chr1 (44598005-44597594) | |
| 4-412, gnl|Hg17|chr3 (196751433-196751024) | |
| 4-412, gnl|Mm7|chr16 (30949677-30949275) | |
| 692-862, gnl|bosTau2|chr1 (44581983-44581813) | |
| 692-862, gnl|canFam2|chr33 (33591363-33591479) | |
| 692-862, gnl|canFam2|chr33 (33591363-33591527) | |
| 692-862, gnl|dasNov1|scaffold_38663 (4296-4412) | |
| 692-862, gnl|dasNov1|scaffold_38663 (4296-4463) | |
| 692-862, gnl|echTel1|scaffold_290805 (78005-77883) | |
| 692-862, gnl|echTel1|scaffold_290805 (78005-77835) | |
| 692-862, gnl|fr1|chrUn (160254733-160254643) | |
| 692-862, gnl|hg17|chr21 (36181764-36181876) | |
| 692-862, gnl|Hg17|chr3 (196727281-196727111) | |
| 692-862, gnl|hg17|chr7 (139446108-139446278) | |
| 692-862, gnl|loxAfr1|scaffold_22955 (5033-5155) | |
| 692-862, gnl|loxAfr1|scaffold_22955 (5033-5203) | |
| 692-862, gnl|Mm7|chr16 (30932937-30932765) | |
| 692-862, gnl|mm7|chr17 (6200041-6200208) | |
| 692-862, gnl|mm7|chr19 (30238297-30238181) | |
| 692-862, gnl|monDom2|scaffold_4 (60807868-60807984) | |
| 692-862, gnl|monDom2|scaffold_4 (60807868-60808005) | |
| 692-862, gnl|oryCun1|scaffold_132859 (10920-10804) | |
| 692-862, gnl|oryCun1|scaffold_135531 (6042-6209) | |
| 692-862, gnl|panTro1|chr22 (36180354-36180466) | |
| 692-862, gnl|panTro1|chr6 (142188616-142188787) | |
| 692-862, gnl|rheMac2|chr3 (10680190-10680077) | |
| 692-862, gnl|rheMac2|chr3 (177791972-177792142) | |
| 692-862, gnl|rn3|chr11 (71395703-71395819) | |
| 692-862, gnl|rn3|chrX (11352296-11352135) | |
| 692-862, gnl|tetNig1|chr1 (12118093-12118201) | |
| 865-2376, gnl|bosTau2|chr1 (44580491-44578984) | |
| 865-2376, gnl|Hg17|chr3 (196725031-196723421) | |
| 865-2376, gnl|Mm7|chr16 (30929156-30927671) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| cte (2.34192) | |
| cbr (1.27975) | |
| tbr (0.770891) | |
| bfe (0.749288) | |
| tes (0.623441) | |
| sme (0.610874) | |
| rec (0.346141) | |
| nco (0.323468) | |
| fce (0.271592) | |
| ste (0.270416) | |
| ecc (0.23007) | |
| cbl (0.229595) | |
| cty (0.20816) | |
| ldo (0.194005) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cki (0.165235) | |
| fco (0.157208) | |
| ski (0.146735) | |
| cst (0.140036) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ret (0.128733) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (2.34192) | |
| cbr (1.27975) | |
| tbr (0.770891) | |
| bfe (0.749288) | |
| tes (0.623441) | |
| sme (0.610874) | |
| rec (0.346141) | |
| nco (0.323468) | |
| fce (0.271592) | |
| ste (0.270416) | |
| ecc (0.23007) | |
| cbl (0.229595) | |
| cty (0.20816) | |
| ldo (0.194005) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cki (0.165235) | |
| fco (0.157208) | |
| ski (0.146735) | |
| cst (0.140036) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ret (0.128733) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) | |
| nbm (0.0993246) |