Non-Coding RNA Search

Ss1.1-Liv1-LVR010045H04.5

Sequence:


               
               TTTTTTTTGCAGCATGAGTCTTTATTGGCATTAGTGATTGGTAAGACATTCATTTTGTTC
AAGTTGGCCATTACTGATTGTGTGAGCAGTTCATTCAGTGGTTCACTGAGCGATTCTGAA
GGAAATATTTGAGATGAGAGGAGGAGGAAGCTTCTTTTCTTAAATTCAGAGTTGCTTGAG
GAGAGAACCATGCGGTTACCCCTGTCTTAATTTTCATTGAGCAAGAACCCATAAAACACA
GTTTGAATGGTTTCTTTTTCATGTTCTTCTCTGTGCAGCTTAAACTCCAGCCAGACCCTG
TCCCCTTTCTTCAGCTGCAAGATGGAGCTTCCTGAAGCTTGCTCATGGCTGTTCTTGGCC
TCCACTTGTTTGTCCCTGATCTGGAAGCCATTCCACATGAGACTCACATTGACAGCGTTT
TGAAACAATATGATATCAAAGCCAAAGTGGTACACACCAGGGACTGTGCAGGTGAACACT
CCAGTGGCTGGGTCAAAGTGGCCCTGATCGTTGTACAGAACTTCCTGGAAAACGATGGGC
TGGGAGGGTCCTGAGAAAGGCCCACTCAGCTTGACAGAAAAGGCAGATTGAGGTGGGGAT
GGGCATTTTTCAATGGCTCCAGGTGGCCCAGGTATTCCTCCTGGTCCTGGTGCACCTTGG
GCTCCTGTTAAACCACGCGGTCCTGGAGGTCCTTGGGGTCCTGGAGGTCCTTGGGGTCCA
TGAGGTCCGCATGGCTCAGAATCTGCTGAAGATTGGACATTGGCCACAAGTAATGGGACA
AAGAGAGCTAAAATCCAGAAACCTGCAATGCTCATGGAGCCAGCTCTTCCTCTTTCCCCA
GACATGGAAGCTCTTTCATTGACCACCTCCTCATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTGCAGCATGAGTCTTTATTGGCATTAGTGATTGGTAAGACATTCATTTTGTTC
AAGTTGGCCATTACTGATTGTGTGAGCAGTTCATTCAGTGGTTCACTGAGCGATTCTGAA
GGAAATATTTGAGATGAGAGGAGGAGGAAGCTTCTTTTCTTAAATTCAGAGTTGCTTGAG
GAGAGAACCATGCGGTTACCCCTGTCTTAATTTTCATTGAGCAAGAACCCATAAAACACA
GTTTGAATGGTTTCTTTTTCATGTTCTTCTCTGTGCAGCTTAAACTCCAGCCAGACCCTG
TCCCCTTTCTTCAGCTGCAAGATGGAGCTTCCTGAAGCTTGCTCATGGCTGTTCTTGGCC
TCCACTTGTTTGTCCCTGATCTGGAAGCCATTCCACATGAGACTCACATTGACAGCGTTT
TGAAACAATATGATATCAAAGCCAAAGTGGTACACACCAGGGACTGTGCAGGTGAACACT
CCAGTGGCTGGGTCAAAGTGGCCCTGATCGTTGTACAGAACTTCCTGGAAAACGATGGGC
TGGGAGGGTCCTGAGAAAGGCCCACTCAGCTTGACAGAAAAGGCAGATTGAGGTGGGGAT
GGGCATTTTTCAATGGCTCCAGGTGGCCCAGGTATTCCTCCTGGTCCTGGTGCACCTTGG
GCTCCTGTTAAACCACGCGGTCCTGGAGGTCCTTGGGGTCCTGGAGGTCCTTGGGGTCCA
TGAGGTCCGCATGGCTCAGAATCTGCTGAAGATTGGACATTGGCCACAAGTAATGGGACA
AAGAGAGCTAAAATCCAGAAACCTGCAATGCTCATGGAGCCAGCTCTTCCTCTTTCCCCA
GACATGGAAGCTCTTTCATTGACCACCTCCTCATCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61842457|ref|XP_588537.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61842457|ref|XP_588537.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               361-631, - strand, RNAz p=0.939519

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               361-631, - strand, RNAz p=0.939519

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               8-666, gnl|bosTau2|chr5 (42798584-42799231)
               

               
               8-666, gnl|Hg17|chr22 (31866399-31865739)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-666, gnl|bosTau2|chr5 (42798584-42799231)
               

               
               8-666, gnl|Hg17|chr22 (31866399-31865739)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               lun (2.7088)
               

               
               cli (2.29218)
               

               
               liv (0.146284)
               

               
               kid (0.129735)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (2.7088)
               

               
               cli (2.29218)
               

               
               liv (0.146284)
               

               
               kid (0.129735)

	8-666, gnl\|bosTau2\|chr5 (42798584-42799231)
	8-666, gnl\|Hg17\|chr22 (31866399-31865739)