Ss1.1-Liv1-LVR010046C10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAACGCGCAGAGCCGCCGCCCGGCGGGCCGTGGATGAAGGTGGCGGATCCTGTGCAGCG CCGGGAGTGAGCGGCCGAGCGGCCGGACCTCAGCCGACTAGTCATGGAAGAGGAGGGTGT GAAGGAGGCGAGCGAGAAGCCTCGGGGAGCGCAAACAGCGGATAAGGCTGGCTGGATCAA AAAGAGCAGCGGGGGCTTCCTGGGGCTCTGGAAAGACCGCTATCTGCTCCTCTGCCAGGC CCAGCTGCTGGTCTACGAGAATGAGGTAAGGCCCTGACTGGTCCTGAATTTGGGGGTGCC CAGCTATGAAAAGTGCCAGGACCTTCGTGCCCTTCTCAAGAGGAAACACCGCTTTATCCT GCTGCGGTCCCCAGGGAACAAGGTCAGCGACATCAAGTTCCAGGCACCCAGTGGGGAGGA GAAGGAATCCTGGATCAAAGCCCTCAATGAAGGGACCAACCGAGGCAAGAACAAGGCTTT TGATGAGGTGAAGGTGGACAAGAGCTGTGCCCTGGAGCACGTGACACGGGACCGCGTGCG TGGGGGCCAGCGGCGCCGGCCCCCTACAAGAGTCCACCTGAAGGAGGTAGCCAATGCAGC ATCTGACGGGCTTTCGCGCCTGGACCTCGATGTTCCCGACTGTATCGGGCCCAGCTGGAG GTGAAGGTGGCCTCGGAACAGACGGAGAAACTGTTGAACAAGGTGCTGGGCAATGAGCCA GCCCCGGTGAACGCCGAGACATTGCTCAGCCAAGCTGTGGAGCAGCTGAGGCAGGCCACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAACGCGCAGAGCCGCCGCCCGGCGGGCCGTGGATGAAGGTGGCGGATCCTGTGCAGCG CCGGGAGTGAGCGGCCGAGCGGCCGGACCTCAGCCGACTAGTCATGGAAGAGGAGGGTGT GAAGGAGGCGAGCGAGAAGCCTCGGGGAGCGCAAACAGCGGATAAGGCTGGCTGGATCAA AAAGAGCAGCGGGGGCTTCCTGGGGCTCTGGAAAGACCGCTATCTGCTCCTCTGCCAGGC CCAGCTGCTGGTCTACGAGAATGAGGTAAGGCCCTGACTGGTCCTGAATTTGGGGGTGCC CAGCTATGAAAAGTGCCAGGACCTTCGTGCCCTTCTCAAGAGGAAACACCGCTTTATCCT GCTGCGGTCCCCAGGGAACAAGGTCAGCGACATCAAGTTCCAGGCACCCAGTGGGGAGGA GAAGGAATCCTGGATCAAAGCCCTCAATGAAGGGACCAACCGAGGCAAGAACAAGGCTTT TGATGAGGTGAAGGTGGACAAGAGCTGTGCCCTGGAGCACGTGACACGGGACCGCGTGCG TGGGGGCCAGCGGCGCCGGCCCCCTACAAGAGTCCACCTGAAGGAGGTAGCCAATGCAGC ATCTGACGGGCTTTCGCGCCTGGACCTCGATGTTCCCGACTGTATCGGGCCCAGCTGGAG GTGAAGGTGGCCTCGGAACAGACGGAGAAACTGTTGAACAAGGTGCTGGGCAATGAGCCA GCCCCGGTGAACGCCGAGACATTGCTCAGCCAAGCTGTGGAGCAGCTGAGGCAGGCCACC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 153-272, + strand, RNAz p=0.588856 | |
| 662-780, + strand, RNAz p=0.94174 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 153-272, + strand, RNAz p=0.588856 | |
| 662-780, + strand, RNAz p=0.94174 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC008744, + |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 114-297, gnl|bosTau2|chr10 (29439561-29439744) | |
| 114-297, gnl|canFam2|chr30 (32243178-32243338) | |
| 114-297, gnl|danRer3|chr7 (3785649-3785809) | |
| 114-297, gnl|dasNov1|scaffold_91618 (776-936) | |
| 114-297, gnl|echTel1|scaffold_320319 (5906-6067) | |
| 114-297, gnl|hg17|chr15 (62927842-62928002) | |
| 114-297, gnl|Hg17|chr15 (62927843-62928026) | |
| 114-297, gnl|loxAfr1|scaffold_28174 (5692-5852) | |
| 114-297, gnl|mm7|chr9 (65602775-65602615) | |
| 114-297, gnl|Mm7|chr9 (65602772-65602547) | |
| 114-297, gnl|monDom2|scaffold_12 (48520910-48520750) | |
| 114-297, gnl|oryCun1|scaffold_177724 (18839-18996) | |
| 114-297, gnl|panTro1|chr16 (63396587-63396747) | |
| 114-297, gnl|rheMac2|chr7 (43319138-43319298) | |
| 114-297, gnl|rn3|chr8 (69850339-69850179) | |
| 381-490, gnl|bosTau2|chr10 (29448536-29448645) | |
| 381-490, gnl|canFam2|chr30 (32252460-32252585) | |
| 381-490, gnl|danRer3|chr7 (3804414-3804527) | |
| 381-490, gnl|dasNov1|scaffold_13554 (12727-12603) | |
| 381-490, gnl|echTel1|scaffold_320319 (16445-16577) | |
| 381-490, gnl|galGal2|chr10 (18362737-18362867) | |
| 381-490, gnl|hg17|chr15 (62939140-62939268) | |
| 381-490, gnl|Hg17|chr15 (62939144-62939253) | |
| 381-490, gnl|loxAfr1|scaffold_88211 (4562-4687) | |
| 381-490, gnl|mm7|chr9 (65589173-65589050) | |
| 381-490, gnl|Mm7|chr9 (65589167-65589058) | |
| 381-490, gnl|monDom2|scaffold_12 (48500671-48500546) | |
| 381-490, gnl|oryCun1|scaffold_175592 (3073-2943) | |
| 381-490, gnl|panTro1|chr16 (63408873-63409001) | |
| 381-490, gnl|rheMac2|chr7 (43330959-43331085) | |
| 381-490, gnl|rn3|chr8 (69834632-69834509) | |
| 640-780, gnl|bosTau2|chr10 (29452969-29453109) | |
| 640-780, gnl|canFam2|chr30 (32257310-32257522) | |
| 640-780, gnl|dasNov1|scaffold_13554 (8144-7932) | |
| 640-780, gnl|echTel1|scaffold_320319 (20973-21170) | |
| 640-780, gnl|galGal2|chr10 (18368648-18368904) | |
| 640-780, gnl|hg17|chr15 (62944865-62945077) | |
| 640-780, gnl|Hg17|chr15 (62944892-62945032) | |
| 640-780, gnl|mm7|chr9 (65585996-65585784) | |
| 640-780, gnl|Mm7|chr9 (65585967-65585827) | |
| 640-780, gnl|monDom2|scaffold_12 (48489024-48488785) | |
| 640-780, gnl|panTro1|chr16 (63415209-63415421) | |
| 640-780, gnl|rheMac2|chr7 (43337010-43337222) | |
| 640-780, gnl|rn3|chr8 (69830135-69829923) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 114-297, gnl|bosTau2|chr10 (29439561-29439744) | |
| 114-297, gnl|canFam2|chr30 (32243178-32243338) | |
| 114-297, gnl|danRer3|chr7 (3785649-3785809) | |
| 114-297, gnl|dasNov1|scaffold_91618 (776-936) | |
| 114-297, gnl|echTel1|scaffold_320319 (5906-6067) | |
| 114-297, gnl|hg17|chr15 (62927842-62928002) | |
| 114-297, gnl|Hg17|chr15 (62927843-62928026) | |
| 114-297, gnl|loxAfr1|scaffold_28174 (5692-5852) | |
| 114-297, gnl|mm7|chr9 (65602775-65602615) | |
| 114-297, gnl|Mm7|chr9 (65602772-65602547) | |
| 114-297, gnl|monDom2|scaffold_12 (48520910-48520750) | |
| 114-297, gnl|oryCun1|scaffold_177724 (18839-18996) | |
| 114-297, gnl|panTro1|chr16 (63396587-63396747) | |
| 114-297, gnl|rheMac2|chr7 (43319138-43319298) | |
| 114-297, gnl|rn3|chr8 (69850339-69850179) | |
| 381-490, gnl|bosTau2|chr10 (29448536-29448645) | |
| 381-490, gnl|canFam2|chr30 (32252460-32252585) | |
| 381-490, gnl|danRer3|chr7 (3804414-3804527) | |
| 381-490, gnl|dasNov1|scaffold_13554 (12727-12603) | |
| 381-490, gnl|echTel1|scaffold_320319 (16445-16577) | |
| 381-490, gnl|galGal2|chr10 (18362737-18362867) | |
| 381-490, gnl|hg17|chr15 (62939140-62939268) | |
| 381-490, gnl|Hg17|chr15 (62939144-62939253) | |
| 381-490, gnl|loxAfr1|scaffold_88211 (4562-4687) | |
| 381-490, gnl|mm7|chr9 (65589173-65589050) | |
| 381-490, gnl|Mm7|chr9 (65589167-65589058) | |
| 381-490, gnl|monDom2|scaffold_12 (48500671-48500546) | |
| 381-490, gnl|oryCun1|scaffold_175592 (3073-2943) | |
| 381-490, gnl|panTro1|chr16 (63408873-63409001) | |
| 381-490, gnl|rheMac2|chr7 (43330959-43331085) | |
| 381-490, gnl|rn3|chr8 (69834632-69834509) | |
| 640-780, gnl|bosTau2|chr10 (29452969-29453109) | |
| 640-780, gnl|canFam2|chr30 (32257310-32257522) | |
| 640-780, gnl|dasNov1|scaffold_13554 (8144-7932) | |
| 640-780, gnl|echTel1|scaffold_320319 (20973-21170) | |
| 640-780, gnl|galGal2|chr10 (18368648-18368904) | |
| 640-780, gnl|hg17|chr15 (62944865-62945077) | |
| 640-780, gnl|Hg17|chr15 (62944892-62945032) | |
| 640-780, gnl|mm7|chr9 (65585996-65585784) | |
| 640-780, gnl|Mm7|chr9 (65585967-65585827) | |
| 640-780, gnl|monDom2|scaffold_12 (48489024-48488785) | |
| 640-780, gnl|panTro1|chr16 (63415209-63415421) | |
| 640-780, gnl|rheMac2|chr7 (43337010-43337222) | |
| 640-780, gnl|rn3|chr8 (69830135-69829923) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |