Non-Coding RNA Search

Ss1.1-Liv1-LVR010046E04.5

Sequence:


               
               AGACGACCGCCGGGAGGGGGACGACCAAGAGACCGAACCCAGGGCTGCGCGGTCAGACGC
TAACCAGGGCGCGAGCGGGAGACGCCGGGCTTGCAGCGCCGAGCAAAAAGCAGAGCCAGC
AGGGAGCTCCAGGACCAGCAGGATGGGGGCCGCCTGTATCAAAGTCACCAAATACTTCCT
CTTCCTCTTCAACTTGCTCTTCTTTGTCCTGGGCGCGGTGATTCTGGGCTTCGGGGTGTG
GATCCTGGCCGACAGGAGCAGCTTCATCTCTGTCCTGCAGACCTCCTCCACCTCGCTCAA
GGTGGGAGCCTACATCTTCATCAGCATAGGGGCCTTCACCATGCTCATGGGCTTCCTGGG
CTGCATTGGTGCCGTCAATGAGGTCCGCTGCCTGCTGGGGCTGTACTTTGCCTTCCTGGT
CCTGATCCTCATCGCCCAGGTGGCTGCTGGGGTCCTCTTCTACTTCAACATGGGCAAGCT
GAAGCAGGAGATGGGCAGCATCGTGACGGAGCTCATTCAGAAGTACGAGGAGGGTCGCCA
GGACAGCTTACAGGAGGCCTGGGACTACGTGCAGGCTCAGGTGCAGTGCTGCGGCTGGGT
CAGCTTCTACAACTGGACAGAAAACCCCAGGCTCATGAATCACACCAACACCACCTACCC
CTGCTCCTGCAAGACAAGGAGCCAGAATGACAGCAGCCTCCCACTGGAGAAGGGTTTCTG
CCACGACCTCAACGGAATCCAGGGTGGCAACAACCCCGATGCCTGGCCCGTGTACCACGA
GGGCTGCATGGAGAAGGTGCAGGCCTGGCTGCAGGAGAACCTGGGCATCATCCTTGGCGT
GTGTGTGGGCGTCGCTGTCATCGAGCTCCTGGGGATGCTCCTGTCCATGTTCTTGTGCCG
CAGCATCCACTCTGAAGACTACAGCAAGGTCCCCAAGTACTGAGGCGGCTGCTGTCCCCA
CCTCCCTGCCCGTCCCCCAACCTCAGGGCCCGCAGGGCTCTCCCTGGCATCCTCCTCCAG
GCCTGCCTCCCACCTCACTGCCAAGAGTGGTGGCAAGAAGCGGGGGCGCTTTCTGGGGCC
CGGACCCCTCTCCTTTGCTCTTCTGCCGCCAGCCTTAAGCCCCCTCTATTCTGCGGCTCC
TTCACTCCTTGTCTGCCAGCGTCGTCTTAGCAACTCAGAGAAAATGCTCCCTGCACAGGT
GGGCTGGGTTTCTACCTGCCTGGGGGGCTGTATATATTGTGTGGGAGAAAGTGTATTAAA
ACCTTGGGGGGGTGGGGGGGGACAAGGTACCCCGGGCTGTCAGGGGACTGCCCACTGCGT
GGGTCGACTTTGTTTCCACTATGATGCTTCTGTCCTTGTTTTCACCTTTTCCTGGAGGTG
GTGGGAGGGGGTGGGCTTGACCTGACATGAAGGACAGCACCCCTTCCCCAGCCTGAGCCA
GCCCCACCCAGGCAGCTCAGACCAGTTGGGCCACACTGTGCAGGCAGGGCCTAGGTGAGC
TGGGTTGAGGGGGGCTGCCTGGGCTGCGGGTCTAGACTGTTCCCTGGATGGCTTAGGGAC
TCAGAGGGGTGCGCCCTCTGGGGGTGGCACCGAGCTGGCCTTGCATTTGCCAGGCTCCTG
AGCTATCCAGGGCCTGGGTGGGTGAGGCTGTGCCTTGTAGGGGGTGGGAAGGGGCCCTGT
GCACAGTTCTGTAAAACAGGAATGACTGATTATTAAAGAGGATTTGTAACAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACGACCGCCGGGAGGGGGACGACCAAGAGACCGAACCCAGGGCTGCGCGGTCAGACGC
TAACCAGGGCGCGAGCGGGAGACGCCGGGCTTGCAGCGCCGAGCAAAAAGCAGAGCCAGC
AGGGAGCTCCAGGACCAGCAGGATGGGGGCCGCCTGTATCAAAGTCACCAAATACTTCCT
CTTCCTCTTCAACTTGCTCTTCTTTGTCCTGGGCGCGGTGATTCTGGGCTTCGGGGTGTG
GATCCTGGCCGACAGGAGCAGCTTCATCTCTGTCCTGCAGACCTCCTCCACCTCGCTCAA
GGTGGGAGCCTACATCTTCATCAGCATAGGGGCCTTCACCATGCTCATGGGCTTCCTGGG
CTGCATTGGTGCCGTCAATGAGGTCCGCTGCCTGCTGGGGCTGTACTTTGCCTTCCTGGT
CCTGATCCTCATCGCCCAGGTGGCTGCTGGGGTCCTCTTCTACTTCAACATGGGCAAGCT
GAAGCAGGAGATGGGCAGCATCGTGACGGAGCTCATTCAGAAGTACGAGGAGGGTCGCCA
GGACAGCTTACAGGAGGCCTGGGACTACGTGCAGGCTCAGGTGCAGTGCTGCGGCTGGGT
CAGCTTCTACAACTGGACAGAAAACCCCAGGCTCATGAATCACACCAACACCACCTACCC
CTGCTCCTGCAAGACAAGGAGCCAGAATGACAGCAGCCTCCCACTGGAGAAGGGTTTCTG
CCACGACCTCAACGGAATCCAGGGTGGCAACAACCCCGATGCCTGGCCCGTGTACCACGA
GGGCTGCATGGAGAAGGTGCAGGCCTGGCTGCAGGAGAACCTGGGCATCATCCTTGGCGT
GTGTGTGGGCGTCGCTGTCATCGAGCTCCTGGGGATGCTCCTGTCCATGTTCTTGTGCCG
CAGCATCCACTCTGAAGACTACAGCAAGGTCCCCAAGTACTGAGGCGGCTGCTGTCCCCA
CCTCCCTGCCCGTCCCCCAACCTCAGGGCCCGCAGGGCTCTCCCTGGCATCCTCCTCCAG
GCCTGCCTCCCACCTCACTGCCAAGAGTGGTGGCAAGAAGCGGGGGCGCTTTCTGGGGCC
CGGACCCCTCTCCTTTGCTCTTCTGCCGCCAGCCTTAAGCCCCCTCTATTCTGCGGCTCC
TTCACTCCTTGTCTGCCAGCGTCGTCTTAGCAACTCAGAGAAAATGCTCCCTGCACAGGT
GGGCTGGGTTTCTACCTGCCTGGGGGGCTGTATATATTGTGTGGGAGAAAGTGTATTAAA
ACCTTGGGGGGGTGGGGGGGGACAAGGTACCCCGGGCTGTCAGGGGACTGCCCACTGCGT
GGGTCGACTTTGTTTCCACTATGATGCTTCTGTCCTTGTTTTCACCTTTTCCTGGAGGTG
GTGGGAGGGGGTGGGCTTGACCTGACATGAAGGACAGCACCCCTTCCCCAGCCTGAGCCA
GCCCCACCCAGGCAGCTCAGACCAGTTGGGCCACACTGTGCAGGCAGGGCCTAGGTGAGC
TGGGTTGAGGGGGGCTGCCTGGGCTGCGGGTCTAGACTGTTCCCTGGATGGCTTAGGGAC
TCAGAGGGGTGCGCCCTCTGGGGGTGGCACCGAGCTGGCCTTGCATTTGCCAGGCTCCTG
AGCTATCCAGGGCCTGGGTGGGTGAGGCTGTGCCTTGTAGGGGGTGGGAAGGGGCCCTGT
GCACAGTTCTGTAAAACAGGAATGACTGATTATTAAAGAGGATTTGTAACAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|49457504|emb|CAG47051.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|49457504|emb|CAG47051.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               279-403, gnl|bosTau2|chr15 (46398878-46399002)
               

               
               279-403, gnl|Hg17|chr11 (44583184-44583308)
               

               
               279-403, gnl|Mm7|chr2 (93280971-93280847)
               


               
               578-791, gnl|bosTau2|chr15 (46411667-46411888)
               

               
               578-791, gnl|Hg17|chr11 (44596284-44596503)
               

               
               578-791, gnl|Mm7|chr2 (93271474-93271259)
               


               
               844-1632, gnl|bosTau2|chr15 (46412551-46413364)
               

               
               844-1632, gnl|Hg17|chr11 (44597156-44598295)
               

               
               844-1632, gnl|Mm7|chr2 (93270677-93269962)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               279-403, gnl|bosTau2|chr15 (46398878-46399002)
               

               
               279-403, gnl|Hg17|chr11 (44583184-44583308)
               

               
               279-403, gnl|Mm7|chr2 (93280971-93280847)
               


               
               578-791, gnl|bosTau2|chr15 (46411667-46411888)
               

               
               578-791, gnl|Hg17|chr11 (44596284-44596503)
               

               
               578-791, gnl|Mm7|chr2 (93271474-93271259)
               


               
               844-1632, gnl|bosTau2|chr15 (46412551-46413364)
               

               
               844-1632, gnl|Hg17|chr11 (44597156-44598295)
               

               
               844-1632, gnl|Mm7|chr2 (93270677-93269962)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               nco (0.485201)
               

               
               eep (0.367692)
               

               
               ill (0.351185)
               

               
               mas (0.210305)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.485201)
               

               
               eep (0.367692)
               

               
               ill (0.351185)
               

               
               mas (0.210305)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	279-403, gnl\|bosTau2\|chr15 (46398878-46399002)
	279-403, gnl\|Hg17\|chr11 (44583184-44583308)
	279-403, gnl\|Mm7\|chr2 (93280971-93280847)

	578-791, gnl\|bosTau2\|chr15 (46411667-46411888)
	578-791, gnl\|Hg17\|chr11 (44596284-44596503)
	578-791, gnl\|Mm7\|chr2 (93271474-93271259)

	844-1632, gnl\|bosTau2\|chr15 (46412551-46413364)
	844-1632, gnl\|Hg17\|chr11 (44597156-44598295)
	844-1632, gnl\|Mm7\|chr2 (93270677-93269962)

	nco (0.485201)
	eep (0.367692)
	ill (0.351185)
	mas (0.210305)
	eje (0.197668)
	nep (0.183925)
	mcp (0.170648)
	nje (0.16592)
	clu (0.119646)
	med (0.116252)
	cty (0.10408)
	nbm (0.0993246)
	jej (0.0989218)