Non-Coding RNA Search

Ss1.1-Liv1-LVR010047B03.5

Sequence:


               
               AGCTGCCGGCCGAGCGAGTCGATGAGGACGCGCTAGAGGCCCGGCGCCCGCAGAAGCGCT
CTGCTTTGCTGGGGGCTGCTCGCTGCCTTTTGCGACGTGGGCACGTGTCTGTCTCCTTGG
AGAGGCAGGCAGGCGACCTGGGACGTGAGTCGGGTGTGTTTGAGCGGCGGGCAGGTTGGA
GTTCGGCCCCGGCGGGTCTCGCGGGCGGCGGCGCAGGGGAGGCCGAGGGTGTTGCCCCGG
GCTGGGGCCGCGCTCGCCCCGGCCTGCGGGAGACCTCGGAGCACGGCGTCGACGGGGATG
GCCGAGCGCCCGGTCTTATCTCCCCGGCCAGTCAGAGGTCTTATCTTTAGCGGTTCAAAG
AGAGGCCTAGGGAAAGGGGCAAGGAGCGCAAAGCGAGACGCGGGCGAACGTTGAATTTTG
TTGGCTTCAGTTATCTCTGAAAACTTTAAGCACAGTTTGAACAAATAGCGTCAGTAGAAT
GGCTTGGGTTTGGTTGTACCTAAGTTTTAAAAACTTAATTTGGATGTTAAAAGTTAGAGA
TGAATATTTATGAGTGGGCGGTGAAAAACAAGGACGATTTTCTCTGCGCTCGTGGTTATG
GAGGTGCGGTCCCCAGACTAGCTTGACCGTCGTCATCGTCATCTAGGAACCGTTAGAAAC
GCACGTTCTTAAGTTTGCTCCAGGAAACTAGACAAAGGGACGCGAACAAAATTGCAAACT
GCTGACTTATGCCGTGTTTCTGGGTTCAGGCAAAAGTTGACTCTATTCTCCAAATTAGTC
TTGTTTTTCTCGTTTCACGTGTACGTTCATTGAAACCAGATACTTCTCATTTGTGCTGAT
TTCCACTCAGTGGCCAGCAGCCTCCTCGGAGATCTCTTTGTTGATAGCGGTCAAGCCTAG
GAGCTGCTGTTAACTCACTCTTGGTGTTTCCCGCTTTGCAAGTGGGGCTCCCGTAGTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGCCGGCCGAGCGAGTCGATGAGGACGCGCTAGAGGCCCGGCGCCCGCAGAAGCGCT
CTGCTTTGCTGGGGGCTGCTCGCTGCCTTTTGCGACGTGGGCACGTGTCTGTCTCCTTGG
AGAGGCAGGCAGGCGACCTGGGACGTGAGTCGGGTGTGTTTGAGCGGCGGGCAGGTTGGA
GTTCGGCCCCGGCGGGTCTCGCGGGCGGCGGCGCAGGGGAGGCCGAGGGTGTTGCCCCGG
GCTGGGGCCGCGCTCGCCCCGGCCTGCGGGAGACCTCGGAGCACGGCGTCGACGGGGATG
GCCGAGCGCCCGGTCTTATCTCCCCGGCCAGTCAGAGGTCTTATCTTTAGCGGTTCAAAG
AGAGGCCTAGGGAAAGGGGCAAGGAGCGCAAAGCGAGACGCGGGCGAACGTTGAATTTTG
TTGGCTTCAGTTATCTCTGAAAACTTTAAGCACAGTTTGAACAAATAGCGTCAGTAGAAT
GGCTTGGGTTTGGTTGTACCTAAGTTTTAAAAACTTAATTTGGATGTTAAAAGTTAGAGA
TGAATATTTATGAGTGGGCGGTGAAAAACAAGGACGATTTTCTCTGCGCTCGTGGTTATG
GAGGTGCGGTCCCCAGACTAGCTTGACCGTCGTCATCGTCATCTAGGAACCGTTAGAAAC
GCACGTTCTTAAGTTTGCTCCAGGAAACTAGACAAAGGGACGCGAACAAAATTGCAAACT
GCTGACTTATGCCGTGTTTCTGGGTTCAGGCAAAAGTTGACTCTATTCTCCAAATTAGTC
TTGTTTTTCTCGTTTCACGTGTACGTTCATTGAAACCAGATACTTCTCATTTGTGCTGAT
TTCCACTCAGTGGCCAGCAGCCTCCTCGGAGATCTCTTTGTTGATAGCGGTCAAGCCTAG
GAGCTGCTGTTAACTCACTCTTGGTGTTTCCCGCTTTGCAAGTGGGGCTCCCGTAGTTCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-960, gnl|bosTau2|chr3 (31346446-31347413)
               

               
               1-960, gnl|Hg17|chr1 (109218159-109216791)
               

               
               1-960, gnl|Mm7|chr3 (108472205-108473221)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-960, gnl|bosTau2|chr3 (31346446-31347413)
               

               
               1-960, gnl|Hg17|chr1 (109218159-109216791)
               

               
               1-960, gnl|Mm7|chr3 (108472205-108473221)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hyp (0.142837)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

	1-960, gnl\|bosTau2\|chr3 (31346446-31347413)
	1-960, gnl\|Hg17\|chr1 (109218159-109216791)
	1-960, gnl\|Mm7\|chr3 (108472205-108473221)