Ss1.1-Liv1-LVR010047E02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCAATCACTGCAGGGCGGGCGTCGCGAGGTGGCCTGTCTGAGGCTGCGCGCCGTGAGGC GTTCCCACGGTCCTGCGGCAGGTAACCAAGACTCCTGCAGTCGAACGCCGGGGCACAGGA TGATTTGGGAAGTAGCCGCGCTGCTCAGCCTGGTCCTGGGAATTGGTGCTGTTCCCGTGG ATGATCCTGAGGATGGAGGCAAACACTGGGTGGTGATTGTCGCGGGTTCGAATGGCTGGT ATAACTATAGGCACCAGGCAGATGCGTGCCATGCCTACCAGATCGTTCACCGCAATGGGA TTCCCGACGAGCAGATCATTGTGATGATGTACGATGACATCGCCAACTCTGAAGACAATC CCACGCCAGGAATCGTGATCAACAGGCCCAACGGCTCGGACGTGTACAAGGGGGTTCTGA AGGACTACACCGGCGAGGATGTCACCCCACAGAATTTCCTGGCGGTGTTGAGAGGCGATG CGGAAGCAGTGAAGGGCAAAGGGTCTGGAAAGGTCTTGAAGAGCGGCCCCCGGGACCACG TGTTCGTTTACTTCACTGATCACGGAGCCACTGGGATACTGGTGTTTCCTAACGAGGATC TTCATGTGAAGGACCTGAACGAGACCATCCACTACATGTACAAGCACAGGATGTACCAAA AGATGGTGTTTTACATTGAAGCCTGTGAGTCTGGGTCCATGATGAACCACCTGCCCCCCA ACATCGACGTTTATGCCACGACCGCCGCCAACCCGAGGGAGTCATCTTACGCCTGTTACT ATGACGAAGCGAGGGCCACGTACCTGGGAGACTGGTACAGCGTCAACTGGATGGAAGACT CAGACTCGGAGGATCTGACCAGAGAGACGCTCCACAAACAGTACCAGCTGGTGAAATCCC ACACCAACACCAGCCACGTCATGCAGTATGGAAACAAGTCCATCTCTGCCATGAAGTTGG TGCAGTTTCAGGGTCTGAAACACAAAGCCAGCTCTCCCATCTCCCTGCCCCCAGTGCAGC ACCTCGACCTCACTCCAAGCCCCGAGGTGCCGCTCACCATCATGAAAAGGAAACTGACGC GCACCAACGATCTGCAGGAGTCCAGGCGTCTTGTCGCGGAGATCGACAGGCATCTGCAGG CCAGGAACGTCATCGAGAAGTCCGTCCGCAAGATCGTCTCCTTGACCGTGGGGTCCGACG CTGAGGTGGACAGGCTCCTGTCCCAGAGAGACCCGCTCACGGCGCACGAGTGCTACCAGG AGGCCGTATTGCACTTCCGCACACACTGCTTCAACTGGCACTCCCCCACGTATGAATATG CTCTGAGACATTTGTACGTGCTGGCCAACCTTTGTGAAAACTCGTATCCGATTGCCAGCA TAAAATTGTCCATGGACAAGGTGTGCCTTGGTTACTACTGACACCGAGCCCCCGCCTGAC GCTTTTCCAAATGTGAATGCCGCCGTCCCTTAGAATGTGTGCCGATCGGAGACCGAAGAC GTGGAGCCAGAGGGCAGCTCGCCCGGCGCCTGCAGGCGCTCCTGGGGATGCGGTCAGGCC TCTCCGGAGCCCGGCTGTCTTTTCCGACCTCGGCAGCTCTTACAGGTCGCCTGTGATCCC CTGGAAAACCCAGATCTGAGCGGCAAAGTTCTGTGCTGAGCTTGGTTCATTTGCTTTTGA AGAGGGTTTTTTGCCCAAACCTTGTAAGGAGCGAGAAGTTCACTGGGGCTTCTGGAGCCA GTGAGAGTCTTTGTTCTGTGGAATTTGAAGCCAGAACCTCTTAAATCTTCACAGTGATTT TATTGAAGAGGAGCATAAACCCCCAAATGGAAAACTATTTTTAGAAAATAGTATCATTTT TGATTGCTTTTGTATTTTATTTTGCAATAACAGACACATCTAAAAAATAAAGATTTATAA CTGAGTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCAATCACTGCAGGGCGGGCGTCGCGAGGTGGCCTGTCTGAGGCTGCGCGCCGTGAGGC GTTCCCACGGTCCTGCGGCAGGTAACCAAGACTCCTGCAGTCGAACGCCGGGGCACAGGA TGATTTGGGAAGTAGCCGCGCTGCTCAGCCTGGTCCTGGGAATTGGTGCTGTTCCCGTGG ATGATCCTGAGGATGGAGGCAAACACTGGGTGGTGATTGTCGCGGGTTCGAATGGCTGGT ATAACTATAGGCACCAGGCAGATGCGTGCCATGCCTACCAGATCGTTCACCGCAATGGGA TTCCCGACGAGCAGATCATTGTGATGATGTACGATGACATCGCCAACTCTGAAGACAATC CCACGCCAGGAATCGTGATCAACAGGCCCAACGGCTCGGACGTGTACAAGGGGGTTCTGA AGGACTACACCGGCGAGGATGTCACCCCACAGAATTTCCTGGCGGTGTTGAGAGGCGATG CGGAAGCAGTGAAGGGCAAAGGGTCTGGAAAGGTCTTGAAGAGCGGCCCCCGGGACCACG TGTTCGTTTACTTCACTGATCACGGAGCCACTGGGATACTGGTGTTTCCTAACGAGGATC TTCATGTGAAGGACCTGAACGAGACCATCCACTACATGTACAAGCACAGGATGTACCAAA AGATGGTGTTTTACATTGAAGCCTGTGAGTCTGGGTCCATGATGAACCACCTGCCCCCCA ACATCGACGTTTATGCCACGACCGCCGCCAACCCGAGGGAGTCATCTTACGCCTGTTACT ATGACGAAGCGAGGGCCACGTACCTGGGAGACTGGTACAGCGTCAACTGGATGGAAGACT CAGACTCGGAGGATCTGACCAGAGAGACGCTCCACAAACAGTACCAGCTGGTGAAATCCC ACACCAACACCAGCCACGTCATGCAGTATGGAAACAAGTCCATCTCTGCCATGAAGTTGG TGCAGTTTCAGGGTCTGAAACACAAAGCCAGCTCTCCCATCTCCCTGCCCCCAGTGCAGC ACCTCGACCTCACTCCAAGCCCCGAGGTGCCGCTCACCATCATGAAAAGGAAACTGACGC GCACCAACGATCTGCAGGAGTCCAGGCGTCTTGTCGCGGAGATCGACAGGCATCTGCAGG CCAGGAACGTCATCGAGAAGTCCGTCCGCAAGATCGTCTCCTTGACCGTGGGGTCCGACG CTGAGGTGGACAGGCTCCTGTCCCAGAGAGACCCGCTCACGGCGCACGAGTGCTACCAGG AGGCCGTATTGCACTTCCGCACACACTGCTTCAACTGGCACTCCCCCACGTATGAATATG CTCTGAGACATTTGTACGTGCTGGCCAACCTTTGTGAAAACTCGTATCCGATTGCCAGCA TAAAATTGTCCATGGACAAGGTGTGCCTTGGTTACTACTGACACCGAGCCCCCGCCTGAC GCTTTTCCAAATGTGAATGCCGCCGTCCCTTAGAATGTGTGCCGATCGGAGACCGAAGAC GTGGAGCCAGAGGGCAGCTCGCCCGGCGCCTGCAGGCGCTCCTGGGGATGCGGTCAGGCC TCTCCGGAGCCCGGCTGTCTTTTCCGACCTCGGCAGCTCTTACAGGTCGCCTGTGATCCC CTGGAAAACCCAGATCTGAGCGGCAAAGTTCTGTGCTGAGCTTGGTTCATTTGCTTTTGA AGAGGGTTTTTTGCCCAAACCTTGTAAGGAGCGAGAAGTTCACTGGGGCTTCTGGAGCCA GTGAGAGTCTTTGTTCTGTGGAATTTGAAGCCAGAACCTCTTAAATCTTCACAGTGATTT TATTGAAGAGGAGCATAAACCCCCAAATGGAAAACTATTTTTAGAAAATAGTATCATTTT TGATTGCTTTTGTATTTTATTTTGCAATAACAGACACATCTAAAAAATAAAGATTTATAA CTGAGTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1664-1811, + strand, RNAz p=0.967675 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1664-1811, + strand, RNAz p=0.967675 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of CR604003, + |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 86-258, gnl|bosTau2|chr21 (36022591-36022763) | |
| 86-258, gnl|canFam2|chr8 (4831177-4831342) | |
| 86-258, gnl|danRer3|chr13 (38706140-38706293) | |
| 86-258, gnl|dasNov1|scaffold_3844 (8090-7924) | |
| 86-258, gnl|fr1|chrUn (2948853-2948667) | |
| 86-258, gnl|hg17|chr13 (64431399-64431571) | |
| 86-258, gnl|Hg17|chr14 (92268918-92268746) | |
| 86-258, gnl|loxAfr1|scaffold_4017 (83847-83679) | |
| 86-258, gnl|mm7|chr12 (99918895-99919053) | |
| 86-258, gnl|Mm7|chr12 (99919052-99918878) | |
| 86-258, gnl|oryCun1|scaffold_186925 (58141-58302) | |
| 86-258, gnl|panTro1|chr14 (46777352-46777524) | |
| 86-258, gnl|rheMac2|chr7 (155936659-155936816) | |
| 86-258, gnl|rn3|chr6 (126698458-126698617) | |
| 86-258, gnl|tetNig1|chr10 (11487034-11486895) | |
| 729-844, gnl|bosTau2|chr21 (35958418-35958533) | |
| 729-844, gnl|canFam2|chr8 (4815069-4815241) | |
| 729-844, gnl|canFam2|chr8 (4815074-4815193) | |
| 729-844, gnl|danRer3|chr13 (38702589-38702730) | |
| 729-844, gnl|danRer3|chr13 (38702593-38702712) | |
| 729-844, gnl|dasNov1|scaffold_3844 (40288-40121) | |
| 729-844, gnl|dasNov1|scaffold_3844 (40281-40164) | |
| 729-844, gnl|echTel1|scaffold_130556 (307-479) | |
| 729-844, gnl|echTel1|scaffold_130556 (312-431) | |
| 729-844, gnl|fr1|chrUn (2951597-2951471) | |
| 729-844, gnl|fr1|chrUn (2951592-2951473) | |
| 729-844, gnl|galGal2|chr5 (41618216-41618389) | |
| 729-844, gnl|hg17|chr13 (64430795-64430914) | |
| 729-844, gnl|hg17|chr14 (92247930-92248102) | |
| 729-844, gnl|Hg17|chr14 (92248054-92247939) | |
| 729-844, gnl|loxAfr1|scaffold_26533 (17332-17164) | |
| 729-844, gnl|loxAfr1|scaffold_26533 (17327-17208) | |
| 729-844, gnl|mm7|chr12 (99895427-99895599) | |
| 729-844, gnl|mm7|chr12 (99895434-99895551) | |
| 729-844, gnl|Mm7|chr12 (99895551-99895436) | |
| 729-844, gnl|monDom2|scaffold_8 (30881447-30881602) | |
| 729-844, gnl|monDom2|scaffold_8 (30881452-30881571) | |
| 729-844, gnl|oryCun1|scaffold_186925 (36156-36326) | |
| 729-844, gnl|oryCun1|scaffold_186925 (36163-36280) | |
| 729-844, gnl|panTro1|chr14 (46776748-46776867) | |
| 729-844, gnl|panTro1|chr15 (92650041-92650213) | |
| 729-844, gnl|rheMac2|chr7 (155915390-155915562) | |
| 729-844, gnl|rheMac2|chr7 (155915395-155915514) | |
| 729-844, gnl|rn3|chr6 (126679310-126679485) | |
| 729-844, gnl|rn3|chr6 (126679321-126679438) | |
| 729-844, gnl|tetNig1|chr10 (11489057-11488931) | |
| 729-844, gnl|tetNig1|chr10 (11489052-11488933) | |
| 729-844, gnl|xenTro1|scaffold_22 (3039632-3039788) | |
| 937-1140, gnl|bosTau2|chr21 (35960674-35960877) | |
| 937-1140, gnl|Hg17|chr14 (92245972-92245769) | |
| 937-1140, gnl|Mm7|chr12 (99893679-99893476) | |
| 1555-1924, gnl|bosTau2|chr21 (35965572-35965943) | |
| 1555-1924, gnl|canFam2|chr8 (4809198-4809418) | |
| 1555-1924, gnl|dasNov1|scaffold_3844 (47269-47028) | |
| 1555-1924, gnl|echTel1|scaffold_276601 (8563-8812) | |
| 1555-1924, gnl|hg17|chr13 (64429691-64429938) | |
| 1555-1924, gnl|Hg17|chr14 (92240283-92239914) | |
| 1555-1924, gnl|loxAfr1|scaffold_26533 (24652-24417) | |
| 1555-1924, gnl|mm7|chr12 (99889429-99889615) | |
| 1555-1924, gnl|monDom2|scaffold_8 (30874848-30875102) | |
| 1555-1924, gnl|oryCun1|scaffold_186925 (29663-29892) | |
| 1555-1924, gnl|panTro1|chr14 (46775635-46775892) | |
| 1555-1924, gnl|rn3|chr6 (126672685-126672885) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 86-258, gnl|bosTau2|chr21 (36022591-36022763) | |
| 86-258, gnl|canFam2|chr8 (4831177-4831342) | |
| 86-258, gnl|danRer3|chr13 (38706140-38706293) | |
| 86-258, gnl|dasNov1|scaffold_3844 (8090-7924) | |
| 86-258, gnl|fr1|chrUn (2948853-2948667) | |
| 86-258, gnl|hg17|chr13 (64431399-64431571) | |
| 86-258, gnl|Hg17|chr14 (92268918-92268746) | |
| 86-258, gnl|loxAfr1|scaffold_4017 (83847-83679) | |
| 86-258, gnl|mm7|chr12 (99918895-99919053) | |
| 86-258, gnl|Mm7|chr12 (99919052-99918878) | |
| 86-258, gnl|oryCun1|scaffold_186925 (58141-58302) | |
| 86-258, gnl|panTro1|chr14 (46777352-46777524) | |
| 86-258, gnl|rheMac2|chr7 (155936659-155936816) | |
| 86-258, gnl|rn3|chr6 (126698458-126698617) | |
| 86-258, gnl|tetNig1|chr10 (11487034-11486895) | |
| 729-844, gnl|bosTau2|chr21 (35958418-35958533) | |
| 729-844, gnl|canFam2|chr8 (4815069-4815241) | |
| 729-844, gnl|canFam2|chr8 (4815074-4815193) | |
| 729-844, gnl|danRer3|chr13 (38702589-38702730) | |
| 729-844, gnl|danRer3|chr13 (38702593-38702712) | |
| 729-844, gnl|dasNov1|scaffold_3844 (40288-40121) | |
| 729-844, gnl|dasNov1|scaffold_3844 (40281-40164) | |
| 729-844, gnl|echTel1|scaffold_130556 (307-479) | |
| 729-844, gnl|echTel1|scaffold_130556 (312-431) | |
| 729-844, gnl|fr1|chrUn (2951597-2951471) | |
| 729-844, gnl|fr1|chrUn (2951592-2951473) | |
| 729-844, gnl|galGal2|chr5 (41618216-41618389) | |
| 729-844, gnl|hg17|chr13 (64430795-64430914) | |
| 729-844, gnl|hg17|chr14 (92247930-92248102) | |
| 729-844, gnl|Hg17|chr14 (92248054-92247939) | |
| 729-844, gnl|loxAfr1|scaffold_26533 (17332-17164) | |
| 729-844, gnl|loxAfr1|scaffold_26533 (17327-17208) | |
| 729-844, gnl|mm7|chr12 (99895427-99895599) | |
| 729-844, gnl|mm7|chr12 (99895434-99895551) | |
| 729-844, gnl|Mm7|chr12 (99895551-99895436) | |
| 729-844, gnl|monDom2|scaffold_8 (30881447-30881602) | |
| 729-844, gnl|monDom2|scaffold_8 (30881452-30881571) | |
| 729-844, gnl|oryCun1|scaffold_186925 (36156-36326) | |
| 729-844, gnl|oryCun1|scaffold_186925 (36163-36280) | |
| 729-844, gnl|panTro1|chr14 (46776748-46776867) | |
| 729-844, gnl|panTro1|chr15 (92650041-92650213) | |
| 729-844, gnl|rheMac2|chr7 (155915390-155915562) | |
| 729-844, gnl|rheMac2|chr7 (155915395-155915514) | |
| 729-844, gnl|rn3|chr6 (126679310-126679485) | |
| 729-844, gnl|rn3|chr6 (126679321-126679438) | |
| 729-844, gnl|tetNig1|chr10 (11489057-11488931) | |
| 729-844, gnl|tetNig1|chr10 (11489052-11488933) | |
| 729-844, gnl|xenTro1|scaffold_22 (3039632-3039788) | |
| 937-1140, gnl|bosTau2|chr21 (35960674-35960877) | |
| 937-1140, gnl|Hg17|chr14 (92245972-92245769) | |
| 937-1140, gnl|Mm7|chr12 (99893679-99893476) | |
| 1555-1924, gnl|bosTau2|chr21 (35965572-35965943) | |
| 1555-1924, gnl|canFam2|chr8 (4809198-4809418) | |
| 1555-1924, gnl|dasNov1|scaffold_3844 (47269-47028) | |
| 1555-1924, gnl|echTel1|scaffold_276601 (8563-8812) | |
| 1555-1924, gnl|hg17|chr13 (64429691-64429938) | |
| 1555-1924, gnl|Hg17|chr14 (92240283-92239914) | |
| 1555-1924, gnl|loxAfr1|scaffold_26533 (24652-24417) | |
| 1555-1924, gnl|mm7|chr12 (99889429-99889615) | |
| 1555-1924, gnl|monDom2|scaffold_8 (30874848-30875102) | |
| 1555-1924, gnl|oryCun1|scaffold_186925 (29663-29892) | |
| 1555-1924, gnl|panTro1|chr14 (46775635-46775892) | |
| 1555-1924, gnl|rn3|chr6 (126672685-126672885) |
| Expressed library(ies): 62 entry(ies) | More info |
| Expressed library(ies): 62 entry(ies) | Help | Less info |
| cki (11.8969) | |
| sme (2.74893) | |
| clu (2.27327) | |
| cov (2.2466) | |
| kid (2.2055) | |
| csk (2.11119) | |
| lun (1.95636) | |
| nje (1.82512) | |
| cje (1.32188) | |
| cbe (1.19617) | |
| jej (1.18706) | |
| sto (1.07894) | |
| cut (1.01954) | |
| jca (0.911681) | |
| cst (0.840218) | |
| che (0.817884) | |
| mga (0.64082) | |
| cty (0.62448) | |
| cli (0.611247) | |
| cga (0.558191) | |
| sin (0.524843) | |
| duo (0.518403) | |
| sug (0.509165) | |
| eje (0.494169) | |
| tra (0.492368) | |
| nco (0.485201) | |
| csp (0.483559) | |
| cag (0.453583) | |
| nms (0.427716) | |
| pla (0.401016) | |
| ute (0.398353) | |
| ova (0.387397) | |
| cmu (0.372787) | |
| cly (0.361925) | |
| mgm (0.360685) | |
| gul (0.355177) | |
| ski (0.29347) | |
| liv (0.292569) | |
| spl (0.286369) | |
| fce (0.271592) | |
| hea (0.204499) | |
| col (0.195008) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| fat (0.147427) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| spc (0.113366) |
| Expressed library(ies): 62 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (11.8969) | |
| sme (2.74893) | |
| clu (2.27327) | |
| cov (2.2466) | |
| kid (2.2055) | |
| csk (2.11119) | |
| lun (1.95636) | |
| nje (1.82512) | |
| cje (1.32188) | |
| cbe (1.19617) | |
| jej (1.18706) | |
| sto (1.07894) | |
| cut (1.01954) | |
| jca (0.911681) | |
| cst (0.840218) | |
| che (0.817884) | |
| mga (0.64082) | |
| cty (0.62448) | |
| cli (0.611247) | |
| cga (0.558191) | |
| sin (0.524843) | |
| duo (0.518403) | |
| sug (0.509165) | |
| eje (0.494169) | |
| tra (0.492368) | |
| nco (0.485201) | |
| csp (0.483559) | |
| cag (0.453583) | |
| nms (0.427716) | |
| pla (0.401016) | |
| ute (0.398353) | |
| ova (0.387397) | |
| cmu (0.372787) | |
| cly (0.361925) | |
| mgm (0.360685) | |
| gul (0.355177) | |
| ski (0.29347) | |
| liv (0.292569) | |
| spl (0.286369) | |
| fce (0.271592) | |
| hea (0.204499) | |
| col (0.195008) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| fat (0.147427) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| spc (0.113366) |