Non-Coding RNA Search

Ss1.1-Liv1-LVR010047F07.5

Sequence:


               
               CTTCTTGAGCCTGCTCGTGGCCACCCACAGACACTTGTAAGGAGGCGAGAGGTCGGCCTG
GCGGAGACACTGTGCAATGAGGGATTAGAGGCCAGGATCCAAGGAGCAAGTGCTACAGCC
GGGAGACGAGGGAACGGGCCCTGAAGACGCATCTACGGAGAGGTCGGCCATGGCCTCTCT
CGGCCTCCAACTTGTAGGCTACATCCTGGGCCTTCTGGGGCTCTTGGGCACCCTGGTTGC
CATGCTGCTCCCCAGCTGGCGAACGAGTTCTTACGTCGGGGCCAGCATCGTGACGGCAGT
CGGCTTCTCCAAGGGCCTCTGGATGGAGTGTGCCACGCACAGCACTGGCATCACCCAGTG
TGACATCTACAGCACCATGCTGGGCCTGCCTGCTGACATCCAGGCTGCCCAGGCCATGAT
GGTGACATCTAGCGCCATCTCCTCGTTGGCCTGTATCATCACCGTGGTGGGCATGCGGTG
CACCGTCTTCTGCCAGAACTCTCGCGCCAAAGACAGAGTGGCGGTGGTGGGTGGAGTCTT
CTTCCTCCTTGGAGGCCTCCTGGGCTTCATCCCCGTTGCGTGGAATCTTCATGGGATCCT
GCGGGACTTCTACTCCCCCCTGGTGCCTGACAGCATGAAATTTGAGATCGGAGAGGCTCT
CTACTTGGGCATCATTTCCTCCCTGTTCTCCCTGATAGCTGGGATCATCCTCTGCTTTTC
CTGCCCACTGCAAGGAAATCGCTCCAACTACTACGATGCCTATCAGGCCCAGCCCCTCGC
CACCCGGAGCTCTCCGAGGCCTGGTCAACCACCCAAAGCCAAGAGTGAGTTTAACTCCTA
CAGCCTGACAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTTGAGCCTGCTCGTGGCCACCCACAGACACTTGTAAGGAGGCGAGAGGTCGGCCTG
GCGGAGACACTGTGCAATGAGGGATTAGAGGCCAGGATCCAAGGAGCAAGTGCTACAGCC
GGGAGACGAGGGAACGGGCCCTGAAGACGCATCTACGGAGAGGTCGGCCATGGCCTCTCT
CGGCCTCCAACTTGTAGGCTACATCCTGGGCCTTCTGGGGCTCTTGGGCACCCTGGTTGC
CATGCTGCTCCCCAGCTGGCGAACGAGTTCTTACGTCGGGGCCAGCATCGTGACGGCAGT
CGGCTTCTCCAAGGGCCTCTGGATGGAGTGTGCCACGCACAGCACTGGCATCACCCAGTG
TGACATCTACAGCACCATGCTGGGCCTGCCTGCTGACATCCAGGCTGCCCAGGCCATGAT
GGTGACATCTAGCGCCATCTCCTCGTTGGCCTGTATCATCACCGTGGTGGGCATGCGGTG
CACCGTCTTCTGCCAGAACTCTCGCGCCAAAGACAGAGTGGCGGTGGTGGGTGGAGTCTT
CTTCCTCCTTGGAGGCCTCCTGGGCTTCATCCCCGTTGCGTGGAATCTTCATGGGATCCT
GCGGGACTTCTACTCCCCCCTGGTGCCTGACAGCATGAAATTTGAGATCGGAGAGGCTCT
CTACTTGGGCATCATTTCCTCCCTGTTCTCCCTGATAGCTGGGATCATCCTCTGCTTTTC
CTGCCCACTGCAAGGAAATCGCTCCAACTACTACGATGCCTATCAGGCCCAGCCCCTCGC
CACCCGGAGCTCTCCGAGGCCTGGTCAACCACCCAAAGCCAAGAGTGAGTTTAACTCCTA
CAGCCTGACAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               CLD2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               CLD2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               280-439, - strand, RNAz p=0.721508

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-439, - strand, RNAz p=0.721508

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-852, gnl|bosTau2|chrX (16943522-16944373)
               

               
               1-852, gnl|Hg17|chrX (105977439-105978286)
               

               
               1-852, gnl|Mm7|chrX (134527752-134528603)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chrX (16943522-16944373)
               

               
               1-852, gnl|Hg17|chrX (105977439-105978286)
               

               
               1-852, gnl|Mm7|chrX (134527752-134528603)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	1-852, gnl\|bosTau2\|chrX (16943522-16944373)
	1-852, gnl\|Hg17\|chrX (105977439-105978286)
	1-852, gnl\|Mm7\|chrX (134527752-134528603)