Non-Coding RNA Search

Ss1.1-Liv1-LVR010047G08.5

Sequence:


               
               ATTAGGACTTGGGGTTTGGTGATGGGAAGGGGCATGTGACCCAAGTCTGGGGCAAGCAAG
AGGGAGAGCAGTCTGTGTCCCAGGGTGGGGTGTGGCTAAGTGGGCAAAGGAATTGGGACT
GTGGGAGAGTTGTAGTGGGGTGGGGTCGGACGCCCCTGAAGTTCAGAGGGCTCTTGGAGG
TGCCCGAGGGTCCGCTATGGAGCTGGCGGAGCCGGGCGCTCGGTAGCCCAGCGGGCAAGG
CAGGTGCCATGGCCCTGATTGAAGGGGTGGGTGATGAGGTGACCATCCTTTTCGCGGTGC
TTGCCTGCCTTCTGGTGCTGGCTCTCGCCTGGGTCTCAACACACACTGCCGAGGGCGTGG
ATCCACTGTCCCAGCCATCAGGGACCCCACCATCAACACAGCCCAGCGAAGCCATGGCGG
TCACTGACAGCATCAGAGGGGAGGCCCCAGGAGCTGAGACCCCGAGCCTGAGACACAGAG
GTCAGGCTGCACAGCCAGAGTCTGGCATGGGGCTCCCGGCCACACCGCCACCCCAGGACT
CCCCCCAAGAGCCCCTCGTGCTACGGCTGAAATTCCTCAACGATTCAGAGCAGGTGGCCA
GGGCCTGGCCCCACGACACCATTGGCTCCCTGAAAAGGACCCAGTTTCCCGGACGGGAGC
AGCACGTGCGACTCATCTACCAAGGGCAGCTGCTAGGAGACGACACCCAGACCCTGGGCA
GCCTTCACCTCCCTCCCAACTGCGTTCTCCACTGCCACGTGTCCACCCGGGTGGGTCCCC
CACACCCACCCTGCCCACCGGGGTCAGAGCCAGGCCCCTCCGGGCTGGAGGTAGGCAGCC
TCCTGCTGCCCCTGCTCCTGCTGCTGCTGCTGCTGCTCTGGTACTGCCAGATCCAGTACC
GGCCCTTCTTTCCCCTGACAGCCACCCTGGGTCTGGCCGGCTTCACCCTACTCCTCAGTC
TCCTGGCCTTTGCCATGTACCGCCCGTAGTGCCTCCACGGGCTCTTGGCAGTGTCGCTGG
CCCCTCCGGACCTTGCTCCCCACGACACGGTGGGAGCTGCTGTCTGCCCCGGCCGGCCTC
TCCCACTTGCCTCTTCCCACTACCCTGGAGCCCAGCCCTGCGCCGCAGAGCGCTCCGGGG
GCCGGCGGAGGCCCCTCCCTGTGACCTTCATGGCTCTGGGCCACCTTCTGGGGCTGCTGG
CCCTCAGCCCCCACGGACAGTCAGCTCCTCCGGGTCAGACAGCTGCTGTCGCTGCCTCGG
CCCTGGGCAGAGCCCGGCCACGCCCCTAGGCCCTTCTTAGTGTTCTGCCTGAAAACCCAG
CCACCTCTAGTCCCTGAGAGCATCTTGAGCTGATTTAGGGACCCAAGGACGGGAGCGTGG
GTGGGAAGGAGGGGGTTCTCTGGAACATGTGCAGATTAAATAACTGTGAAGTTTTCAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAGGACTTGGGGTTTGGTGATGGGAAGGGGCATGTGACCCAAGTCTGGGGCAAGCAAG
AGGGAGAGCAGTCTGTGTCCCAGGGTGGGGTGTGGCTAAGTGGGCAAAGGAATTGGGACT
GTGGGAGAGTTGTAGTGGGGTGGGGTCGGACGCCCCTGAAGTTCAGAGGGCTCTTGGAGG
TGCCCGAGGGTCCGCTATGGAGCTGGCGGAGCCGGGCGCTCGGTAGCCCAGCGGGCAAGG
CAGGTGCCATGGCCCTGATTGAAGGGGTGGGTGATGAGGTGACCATCCTTTTCGCGGTGC
TTGCCTGCCTTCTGGTGCTGGCTCTCGCCTGGGTCTCAACACACACTGCCGAGGGCGTGG
ATCCACTGTCCCAGCCATCAGGGACCCCACCATCAACACAGCCCAGCGAAGCCATGGCGG
TCACTGACAGCATCAGAGGGGAGGCCCCAGGAGCTGAGACCCCGAGCCTGAGACACAGAG
GTCAGGCTGCACAGCCAGAGTCTGGCATGGGGCTCCCGGCCACACCGCCACCCCAGGACT
CCCCCCAAGAGCCCCTCGTGCTACGGCTGAAATTCCTCAACGATTCAGAGCAGGTGGCCA
GGGCCTGGCCCCACGACACCATTGGCTCCCTGAAAAGGACCCAGTTTCCCGGACGGGAGC
AGCACGTGCGACTCATCTACCAAGGGCAGCTGCTAGGAGACGACACCCAGACCCTGGGCA
GCCTTCACCTCCCTCCCAACTGCGTTCTCCACTGCCACGTGTCCACCCGGGTGGGTCCCC
CACACCCACCCTGCCCACCGGGGTCAGAGCCAGGCCCCTCCGGGCTGGAGGTAGGCAGCC
TCCTGCTGCCCCTGCTCCTGCTGCTGCTGCTGCTGCTCTGGTACTGCCAGATCCAGTACC
GGCCCTTCTTTCCCCTGACAGCCACCCTGGGTCTGGCCGGCTTCACCCTACTCCTCAGTC
TCCTGGCCTTTGCCATGTACCGCCCGTAGTGCCTCCACGGGCTCTTGGCAGTGTCGCTGG
CCCCTCCGGACCTTGCTCCCCACGACACGGTGGGAGCTGCTGTCTGCCCCGGCCGGCCTC
TCCCACTTGCCTCTTCCCACTACCCTGGAGCCCAGCCCTGCGCCGCAGAGCGCTCCGGGG
GCCGGCGGAGGCCCCTCCCTGTGACCTTCATGGCTCTGGGCCACCTTCTGGGGCTGCTGG
CCCTCAGCCCCCACGGACAGTCAGCTCCTCCGGGTCAGACAGCTGCTGTCGCTGCCTCGG
CCCTGGGCAGAGCCCGGCCACGCCCCTAGGCCCTTCTTAGTGTTCTGCCTGAAAACCCAG
CCACCTCTAGTCCCTGAGAGCATCTTGAGCTGATTTAGGGACCCAAGGACGGGAGCGTGG
GTGGGAAGGAGGGGGTTCTCTGGAACATGTGCAGATTAAATAACTGTGAAGTTTTCAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q53AQ2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53AQ2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               675-1074, - strand, RNAz p=0.991111

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               675-1074, - strand, RNAz p=0.991111

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               636-1437, gnl|bosTau2|chr4 (64514109-64514924)
               

               
               636-1437, gnl|Hg17|chr7 (150216637-150215820)
               

               
               636-1437, gnl|Mm7|chr5 (23486768-23485958)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               636-1437, gnl|bosTau2|chr4 (64514109-64514924)
               

               
               636-1437, gnl|Hg17|chr7 (150216637-150215820)
               

               
               636-1437, gnl|Mm7|chr5 (23486768-23485958)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               nco (0.323468)
               

               
               fcc (0.197785)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.323468)
               

               
               fcc (0.197785)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	636-1437, gnl\|bosTau2\|chr4 (64514109-64514924)
	636-1437, gnl\|Hg17\|chr7 (150216637-150215820)
	636-1437, gnl\|Mm7\|chr5 (23486768-23485958)

	nco (0.323468)
	fcc (0.197785)
	mcp (0.170648)
	csp (0.161186)
	cli (0.152812)
	hyp (0.142837)
	pla (0.133672)
	ebs (0.118301)
	cty (0.10408)