Ss1.1-Liv1-LVR010048A01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTCAGAAGTCCGCTCTGGCCAGTGACGCCTGTGCTCCTTCTCCGGTGCGTGATCCTGCC GACCCGCCCCTGCGGCCATGAAGATCGCAGTGATTGGACAGAGCCTGTTTGGCCAGGAAG TTTACAACCACCTGAAGGAGGAGGGTCACAAGGTCGTGGGCGTGTTCACTGTGCCAGACC AGGATGGGAAGGTGGACCCCCTGGGCCTGAAGGCTGAGCAGGATGGAGTGCCGGTGTTCA AGTTCACCCGCTGGAGGGCAAAGGGGCAGGCTCTGCCCGACGTGGTGGCGAAGTACCAGG CCCTGGGTGCCGAGCTCAACGTCCTGCCCTTCTGCAGCCAGTTCATCCCCATGGAGATCA TCAGTGCCCCCCGCTATGGCTCCATCATCTACCACCCGAGCCTGCTCCCCCGGCACCGAG GGGCCTCATCCATCAACTGGACCCTCATTCATGGAGACAAGAAAGCGGGGTTTACCATCT TCTGGGCGGATGATGGCCTGGACACTGGAGACCTTCTGTTGCAGAAGGAGTGTGACGTCC TCCCGGATGATACCGTGAACACGCTGTACAGCCGCTTCCTCTTCCCAGAAGGCGTCAAAG GGATGGTTCAGGCCGTGAGGCTGATTGCCGAAGGCAAAGCCCCCAGACTCCCGCAGCCTG AGGAAGGAGCCACCTATGAGGGGATTCAGAAGAAAGAAACAGCCAGGATCAACTGGGAAC AGCCAGCAGAGGCCATTCATAACTGGATCCGCGGGAACGACAAGGTGCCAGGTGCCTGGA CAGAAGCCTGTGGGCAGAAACTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTCAGAAGTCCGCTCTGGCCAGTGACGCCTGTGCTCCTTCTCCGGTGCGTGATCCTGCC GACCCGCCCCTGCGGCCATGAAGATCGCAGTGATTGGACAGAGCCTGTTTGGCCAGGAAG TTTACAACCACCTGAAGGAGGAGGGTCACAAGGTCGTGGGCGTGTTCACTGTGCCAGACC AGGATGGGAAGGTGGACCCCCTGGGCCTGAAGGCTGAGCAGGATGGAGTGCCGGTGTTCA AGTTCACCCGCTGGAGGGCAAAGGGGCAGGCTCTGCCCGACGTGGTGGCGAAGTACCAGG CCCTGGGTGCCGAGCTCAACGTCCTGCCCTTCTGCAGCCAGTTCATCCCCATGGAGATCA TCAGTGCCCCCCGCTATGGCTCCATCATCTACCACCCGAGCCTGCTCCCCCGGCACCGAG GGGCCTCATCCATCAACTGGACCCTCATTCATGGAGACAAGAAAGCGGGGTTTACCATCT TCTGGGCGGATGATGGCCTGGACACTGGAGACCTTCTGTTGCAGAAGGAGTGTGACGTCC TCCCGGATGATACCGTGAACACGCTGTACAGCCGCTTCCTCTTCCCAGAAGGCGTCAAAG GGATGGTTCAGGCCGTGAGGCTGATTGCCGAAGGCAAAGCCCCCAGACTCCCGCAGCCTG AGGAAGGAGCCACCTATGAGGGGATTCAGAAGAAAGAAACAGCCAGGATCAACTGGGAAC AGCCAGCAGAGGCCATTCATAACTGGATCCGCGGGAACGACAAGGTGCCAGGTGCCTGGA CAGAAGCCTGTGGGCAGAAACTGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 605-707, - strand, RNAz p=0.723353 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 605-707, - strand, RNAz p=0.723353 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 204-440, gnl|bosTau2|chr7 (16774651-16774887) | |
| 204-440, gnl|canFam2|chr20 (3369382-3369634) | |
| 204-440, gnl|danRer3|chr2 (44985239-44985003) | |
| 204-440, gnl|dasNov1|scaffold_33413 (4158-4401) | |
| 204-440, gnl|echTel1|scaffold_258518 (5729-5469) | |
| 204-440, gnl|fr1|chrUn (245631561-245631302) | |
| 204-440, gnl|galGal2|chr1 (51010249-51009999) | |
| 204-440, gnl|hg17|chr3 (127359933-127360192) | |
| 204-440, gnl|Hg17|chr3 (127360181-127359945) | |
| 204-440, gnl|loxAfr1|scaffold_45368 (7889-7630) | |
| 204-440, gnl|mm7|chr6 (90638169-90637925) | |
| 204-440, gnl|Mm7|chr6 (90637926-90638162) | |
| 204-440, gnl|monDom2|scaffold_5 (44107232-44106971) | |
| 204-440, gnl|oryCun1|scaffold_185629 (7577-7836) | |
| 204-440, gnl|panTro1|chr2 (129209171-129209430) | |
| 204-440, gnl|rheMac2|chr2 (45938129-45938388) | |
| 204-440, gnl|rn3|chr7 (22431491-22431247) | |
| 204-440, gnl|tetNig1|chrUn_random (48667426-48667167) | |
| 204-440, gnl|xenTro1|scaffold_368 (1177916-1177669) | |
| 605-707, gnl|bosTau2|chr7 (16776698-16776800) | |
| 605-707, gnl|canFam2|chr20 (3362183-3362330) | |
| 605-707, gnl|danRer3|chr2 (44987731-44987624) | |
| 605-707, gnl|echTel1|scaffold_258518 (9644-9496) | |
| 605-707, gnl|fr1|chrUn (245633005-245632892) | |
| 605-707, gnl|galGal2|chr1 (51014285-51014158) | |
| 605-707, gnl|hg17|chr3 (127356922-127357070) | |
| 605-707, gnl|Hg17|chr3 (127357045-127356943) | |
| 605-707, gnl|mm7|chr6 (90641427-90641280) | |
| 605-707, gnl|Mm7|chr6 (90641303-90641405) | |
| 605-707, gnl|monDom2|scaffold_5 (44111612-44111489) | |
| 605-707, gnl|oryCun1|scaffold_102666 (2713-2822) | |
| 605-707, gnl|panTro1|chr2 (129206160-129206308) | |
| 605-707, gnl|rheMac2|chr2 (45935122-45935269) | |
| 605-707, gnl|rn3|chr7 (22436087-22435967) | |
| 605-707, gnl|tetNig1|chrUn_random (48669567-48669442) | |
| 605-707, gnl|xenTro1|scaffold_368 (1178901-1178763) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 204-440, gnl|bosTau2|chr7 (16774651-16774887) | |
| 204-440, gnl|canFam2|chr20 (3369382-3369634) | |
| 204-440, gnl|danRer3|chr2 (44985239-44985003) | |
| 204-440, gnl|dasNov1|scaffold_33413 (4158-4401) | |
| 204-440, gnl|echTel1|scaffold_258518 (5729-5469) | |
| 204-440, gnl|fr1|chrUn (245631561-245631302) | |
| 204-440, gnl|galGal2|chr1 (51010249-51009999) | |
| 204-440, gnl|hg17|chr3 (127359933-127360192) | |
| 204-440, gnl|Hg17|chr3 (127360181-127359945) | |
| 204-440, gnl|loxAfr1|scaffold_45368 (7889-7630) | |
| 204-440, gnl|mm7|chr6 (90638169-90637925) | |
| 204-440, gnl|Mm7|chr6 (90637926-90638162) | |
| 204-440, gnl|monDom2|scaffold_5 (44107232-44106971) | |
| 204-440, gnl|oryCun1|scaffold_185629 (7577-7836) | |
| 204-440, gnl|panTro1|chr2 (129209171-129209430) | |
| 204-440, gnl|rheMac2|chr2 (45938129-45938388) | |
| 204-440, gnl|rn3|chr7 (22431491-22431247) | |
| 204-440, gnl|tetNig1|chrUn_random (48667426-48667167) | |
| 204-440, gnl|xenTro1|scaffold_368 (1177916-1177669) | |
| 605-707, gnl|bosTau2|chr7 (16776698-16776800) | |
| 605-707, gnl|canFam2|chr20 (3362183-3362330) | |
| 605-707, gnl|danRer3|chr2 (44987731-44987624) | |
| 605-707, gnl|echTel1|scaffold_258518 (9644-9496) | |
| 605-707, gnl|fr1|chrUn (245633005-245632892) | |
| 605-707, gnl|galGal2|chr1 (51014285-51014158) | |
| 605-707, gnl|hg17|chr3 (127356922-127357070) | |
| 605-707, gnl|Hg17|chr3 (127357045-127356943) | |
| 605-707, gnl|mm7|chr6 (90641427-90641280) | |
| 605-707, gnl|Mm7|chr6 (90641303-90641405) | |
| 605-707, gnl|monDom2|scaffold_5 (44111612-44111489) | |
| 605-707, gnl|oryCun1|scaffold_102666 (2713-2822) | |
| 605-707, gnl|panTro1|chr2 (129206160-129206308) | |
| 605-707, gnl|rheMac2|chr2 (45935122-45935269) | |
| 605-707, gnl|rn3|chr7 (22436087-22435967) | |
| 605-707, gnl|tetNig1|chrUn_random (48669567-48669442) | |
| 605-707, gnl|xenTro1|scaffold_368 (1178901-1178763) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.165235) |