Ss1.1-Liv1-LVR010048C12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTCCCGCATGGAGCGCGAGCCGAGCGCCTCGGAGGCCGCCCCACCTGCGACCGCGCTCT TCGCCTGGGGTGCAAATAGCTATGGGCAACTTGGCCTTGGCCACAAGGAAGATGTGCTTT TGCCCCAGCAACTGAGTGAATTCTGTAAACCTGGATGTGTCAAGAGGATCACGGGAGGAG GGGGCCACTCTGCTATTGTCACAGATCAAGGAAGCCTTTTTGTTTGTGGCCTGAACAAAG ATGGGCAACTGGGGCTTGGTCACACCGAGGATGTCCTTTATTTCACCCTCTGCAAATCCC TCCTTGGCTGTCCCATCCAACAGGTGGCCTGTGGCTGGGATTTTACCATTATACTTACAA AAAATGGTCAAGTTCTGTCATGTGGGTCCAACTCCTTTGGCCAGTTAGGAGTTCCTCATG GGCCTCGAAGATGTGTGGTCCCCCAGGCCATTGAGGTCCAGAGAGAGAAGGTTGTTAGTA TTGCTGCTGGACTGAGGCATGCGTTAGCTGCAACAGCTAGTGGCCTCGTGTTCCAGTGGG GAACTGGTTTGGCATCATCTGGACGGCGGTTGTGCCCTGGGCAGACGCTCCCACTGTTTT TGACAGCAAAGGAACCGAGCAAAGTGACAGGCCTAGAGAATTCTCAAGCAGTATGTGTTC TTGCTGGCTCAGGTCACTCTGCTTCCCTGACAGATGCAGGAGAGCTGTATGTTTGGGGAA GCAACAAACACGGGCAACTGGCTTCCCAGGCTGCTTTCCTTCCTCTACCCCAGAAAATAG AAGCACATCGTTTTCAGAATGAAAAGGTGGCTGCCGTCTGGAGTGGGTGGACGCACCTGG TTGCTCAGACAGAAACTGGCAAGGTGTTTACCTGGGGCCGAGCGGACTATGGTCAGCTGG GGAGGACGTTGGAGTCTCCTGAAGGCTGGAAACCGAAGAAGCAAGCTTCATCCTTGCCCT GCTCCAGGCCAGCGAGGAGTGTGCCTTCGTCCCTGCCTTGCTTAACGGGAGCGACTGAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTCCCGCATGGAGCGCGAGCCGAGCGCCTCGGAGGCCGCCCCACCTGCGACCGCGCTCT TCGCCTGGGGTGCAAATAGCTATGGGCAACTTGGCCTTGGCCACAAGGAAGATGTGCTTT TGCCCCAGCAACTGAGTGAATTCTGTAAACCTGGATGTGTCAAGAGGATCACGGGAGGAG GGGGCCACTCTGCTATTGTCACAGATCAAGGAAGCCTTTTTGTTTGTGGCCTGAACAAAG ATGGGCAACTGGGGCTTGGTCACACCGAGGATGTCCTTTATTTCACCCTCTGCAAATCCC TCCTTGGCTGTCCCATCCAACAGGTGGCCTGTGGCTGGGATTTTACCATTATACTTACAA AAAATGGTCAAGTTCTGTCATGTGGGTCCAACTCCTTTGGCCAGTTAGGAGTTCCTCATG GGCCTCGAAGATGTGTGGTCCCCCAGGCCATTGAGGTCCAGAGAGAGAAGGTTGTTAGTA TTGCTGCTGGACTGAGGCATGCGTTAGCTGCAACAGCTAGTGGCCTCGTGTTCCAGTGGG GAACTGGTTTGGCATCATCTGGACGGCGGTTGTGCCCTGGGCAGACGCTCCCACTGTTTT TGACAGCAAAGGAACCGAGCAAAGTGACAGGCCTAGAGAATTCTCAAGCAGTATGTGTTC TTGCTGGCTCAGGTCACTCTGCTTCCCTGACAGATGCAGGAGAGCTGTATGTTTGGGGAA GCAACAAACACGGGCAACTGGCTTCCCAGGCTGCTTTCCTTCCTCTACCCCAGAAAATAG AAGCACATCGTTTTCAGAATGAAAAGGTGGCTGCCGTCTGGAGTGGGTGGACGCACCTGG TTGCTCAGACAGAAACTGGCAAGGTGTTTACCTGGGGCCGAGCGGACTATGGTCAGCTGG GGAGGACGTTGGAGTCTCCTGAAGGCTGGAAACCGAAGAAGCAAGCTTCATCCTTGCCCT GCTCCAGGCCAGCGAGGAGTGTGCCTTCGTCCCTGCCTTGCTTAACGGGAGCGACTGAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 202-339, + strand, RNAz p=0.976316 | |
| 240-359, + strand, RNAz p=0.577379 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 202-339, + strand, RNAz p=0.976316 | |
| 240-359, + strand, RNAz p=0.577379 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 202-359, gnl|bosTau2|chr15 (19314338-19314495) | |
| 202-359, gnl|canFam2|chr21 (43726932-43727126) | |
| 202-359, gnl|danRer3|chr12 (18936458-18936282) | |
| 202-359, gnl|dasNov1|scaffold_2404 (38016-37823) | |
| 202-359, gnl|echTel1|scaffold_293026 (4064-4251) | |
| 202-359, gnl|fr1|chrUn (193881720-193881898) | |
| 202-359, gnl|galGal2|chr5 (10012665-10012831) | |
| 202-359, gnl|hg17|chr11 (17984691-17984885) | |
| 202-359, gnl|Hg17|chr11 (17984872-17984720) | |
| 202-359, gnl|loxAfr1|scaffold_41739 (5201-5395) | |
| 202-359, gnl|mm7|chr7 (42809935-42810127) | |
| 202-359, gnl|Mm7|chr7 (42810114-42809960) | |
| 202-359, gnl|monDom2|scaffold_10 (53786246-53786054) | |
| 202-359, gnl|oryCun1|scaffold_176331 (113929-113735) | |
| 202-359, gnl|panTro1|chr9 (18227085-18227279) | |
| 202-359, gnl|rheMac2|chr14 (53917947-53917753) | |
| 202-359, gnl|rn3|chr1 (97253188-97253380) | |
| 202-359, gnl|tetNig1|chr13 (12370930-12371092) | |
| 515-631, gnl|bosTau2|chr15 (19327934-19328050) | |
| 515-631, gnl|canFam2|chr21 (43715711-43715928) | |
| 515-631, gnl|dasNov1|scaffold_2404 (53342-53132) | |
| 515-631, gnl|echTel1|scaffold_322821 (170795-170996) | |
| 515-631, gnl|galGal2|chr5 (10010024-10010217) | |
| 515-631, gnl|hg17|chr11 (17973833-17974040) | |
| 515-631, gnl|Hg17|chr11 (17974034-17973918) | |
| 515-631, gnl|loxAfr1|scaffold_15034 (4855-4646) | |
| 515-631, gnl|mm7|chr7 (42797675-42797883) | |
| 515-631, gnl|Mm7|chr7 (42797877-42797761) | |
| 515-631, gnl|monDom2|scaffold_10 (53791027-53790813) | |
| 515-631, gnl|oryCun1|scaffold_206591 (49883-50076) | |
| 515-631, gnl|panTro1|chr9 (18216258-18216465) | |
| 515-631, gnl|rheMac2|chr14 (53928833-53928626) | |
| 515-631, gnl|rn3|chr1 (97239761-97239955) | |
| 692-852, gnl|bosTau2|chr15 (19337693-19337853) | |
| 692-852, gnl|canFam2|chr21 (43709381-43709571) | |
| 692-852, gnl|dasNov1|scaffold_2404 (59912-59722) | |
| 692-852, gnl|fr1|chrUn (193880816-193881003) | |
| 692-852, gnl|galGal2|chr5 (10006948-10007138) | |
| 692-852, gnl|hg17|chr11 (17966715-17966905) | |
| 692-852, gnl|Hg17|chr11 (17966879-17966720) | |
| 692-852, gnl|loxAfr1|scaffold_15034 (25277-25091) | |
| 692-852, gnl|mm7|chr7 (42790814-42790999) | |
| 692-852, gnl|Mm7|chr7 (42790979-42790819) | |
| 692-852, gnl|monDom2|scaffold_10 (53798083-53797905) | |
| 692-852, gnl|oryCun1|scaffold_206591 (41146-41336) | |
| 692-852, gnl|panTro1|chr9 (18209079-18209269) | |
| 692-852, gnl|rheMac2|chr14 (53935662-53935472) | |
| 692-852, gnl|rn3|chr1 (97233194-97233379) | |
| 692-852, gnl|tetNig1|chr13 (12369867-12370054) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 202-359, gnl|bosTau2|chr15 (19314338-19314495) | |
| 202-359, gnl|canFam2|chr21 (43726932-43727126) | |
| 202-359, gnl|danRer3|chr12 (18936458-18936282) | |
| 202-359, gnl|dasNov1|scaffold_2404 (38016-37823) | |
| 202-359, gnl|echTel1|scaffold_293026 (4064-4251) | |
| 202-359, gnl|fr1|chrUn (193881720-193881898) | |
| 202-359, gnl|galGal2|chr5 (10012665-10012831) | |
| 202-359, gnl|hg17|chr11 (17984691-17984885) | |
| 202-359, gnl|Hg17|chr11 (17984872-17984720) | |
| 202-359, gnl|loxAfr1|scaffold_41739 (5201-5395) | |
| 202-359, gnl|mm7|chr7 (42809935-42810127) | |
| 202-359, gnl|Mm7|chr7 (42810114-42809960) | |
| 202-359, gnl|monDom2|scaffold_10 (53786246-53786054) | |
| 202-359, gnl|oryCun1|scaffold_176331 (113929-113735) | |
| 202-359, gnl|panTro1|chr9 (18227085-18227279) | |
| 202-359, gnl|rheMac2|chr14 (53917947-53917753) | |
| 202-359, gnl|rn3|chr1 (97253188-97253380) | |
| 202-359, gnl|tetNig1|chr13 (12370930-12371092) | |
| 515-631, gnl|bosTau2|chr15 (19327934-19328050) | |
| 515-631, gnl|canFam2|chr21 (43715711-43715928) | |
| 515-631, gnl|dasNov1|scaffold_2404 (53342-53132) | |
| 515-631, gnl|echTel1|scaffold_322821 (170795-170996) | |
| 515-631, gnl|galGal2|chr5 (10010024-10010217) | |
| 515-631, gnl|hg17|chr11 (17973833-17974040) | |
| 515-631, gnl|Hg17|chr11 (17974034-17973918) | |
| 515-631, gnl|loxAfr1|scaffold_15034 (4855-4646) | |
| 515-631, gnl|mm7|chr7 (42797675-42797883) | |
| 515-631, gnl|Mm7|chr7 (42797877-42797761) | |
| 515-631, gnl|monDom2|scaffold_10 (53791027-53790813) | |
| 515-631, gnl|oryCun1|scaffold_206591 (49883-50076) | |
| 515-631, gnl|panTro1|chr9 (18216258-18216465) | |
| 515-631, gnl|rheMac2|chr14 (53928833-53928626) | |
| 515-631, gnl|rn3|chr1 (97239761-97239955) | |
| 692-852, gnl|bosTau2|chr15 (19337693-19337853) | |
| 692-852, gnl|canFam2|chr21 (43709381-43709571) | |
| 692-852, gnl|dasNov1|scaffold_2404 (59912-59722) | |
| 692-852, gnl|fr1|chrUn (193880816-193881003) | |
| 692-852, gnl|galGal2|chr5 (10006948-10007138) | |
| 692-852, gnl|hg17|chr11 (17966715-17966905) | |
| 692-852, gnl|Hg17|chr11 (17966879-17966720) | |
| 692-852, gnl|loxAfr1|scaffold_15034 (25277-25091) | |
| 692-852, gnl|mm7|chr7 (42790814-42790999) | |
| 692-852, gnl|Mm7|chr7 (42790979-42790819) | |
| 692-852, gnl|monDom2|scaffold_10 (53798083-53797905) | |
| 692-852, gnl|oryCun1|scaffold_206591 (41146-41336) | |
| 692-852, gnl|panTro1|chr9 (18209079-18209269) | |
| 692-852, gnl|rheMac2|chr14 (53935662-53935472) | |
| 692-852, gnl|rn3|chr1 (97233194-97233379) | |
| 692-852, gnl|tetNig1|chr13 (12369867-12370054) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| cty (0.10408) |