Non-Coding RNA Search

Ss1.1-Liv1-LVR010048D12.5

Sequence:


               
               AAGCCGCTGCTGTTTCGGGGTGGTGAGTGTCAGTGGGCCCTGGCGACTTTTCTAGGTCAG
TTTTCGTTGCAGACGCTCGAGTGCCTTGAATTGGGGGAAAGGGCGATGGCCACCCAGGAT
GCCACCCCAAGTAGCCAGTGGGAGGGAAGCAATGCTTTGGACCTGCCATCCGCTTGTGAC
ATAAGGGATTACGTGTTGCAGAGACCCAGCCAGGAGGCCAGCAGCGAGGCTTTCAGTTCT
GAGGAAGCCCTTTCATTTCCTTGCTCTTCTGATGTGGATCCAGACACCAGTAACCTAAAT
ACTGAACAGAGTGATTCCTGGACCTCTGAGAACTTCTGGCTTAACCATCCTGTGAAGGGC
TGGCCAGAGACCCAGACAGAGGATGATGGACTTCGGGAATCTCTGGATAGATTCTATGAA
GTGTTTGGCCATTCTCAGCCAGCCTCTGGAAATCCACTCTCCACATCTGTCTGCCAGTGC
CTGTCTCAGAAAATCAGCGAACTGAAGAGCCAGGGGAACCAAGAGTACACCCTCCGTAGT
TTTCAACTGGCCCGGGTCATCTTCAACCGGGATGGCTGCTCCGTCCTACAGAGGCATTCC
AGGGACGCTCACTTCTGCCCACCAGGAGAAGGAGAAGAAAGTGCATCTCTGGAGGATGGA
AAACTGACCCCAGGACTTTCCAAAGATATCATTCACTTTCTCTTGCAGCAGAACGTGATG
AAAGACTTATAACTGGTGCCTGGTGGTGAGAGCAGGCACTTGGAGGGGAGCCCAGAGGCG
GATACTGTTGGTGCTCCACCCAGTTCTCANGCCAAGTAAATGCTTTGCAAGAGAAGGCTG
GCATCTGCGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCCGCTGCTGTTTCGGGGTGGTGAGTGTCAGTGGGCCCTGGCGACTTTTCTAGGTCAG
TTTTCGTTGCAGACGCTCGAGTGCCTTGAATTGGGGGAAAGGGCGATGGCCACCCAGGAT
GCCACCCCAAGTAGCCAGTGGGAGGGAAGCAATGCTTTGGACCTGCCATCCGCTTGTGAC
ATAAGGGATTACGTGTTGCAGAGACCCAGCCAGGAGGCCAGCAGCGAGGCTTTCAGTTCT
GAGGAAGCCCTTTCATTTCCTTGCTCTTCTGATGTGGATCCAGACACCAGTAACCTAAAT
ACTGAACAGAGTGATTCCTGGACCTCTGAGAACTTCTGGCTTAACCATCCTGTGAAGGGC
TGGCCAGAGACCCAGACAGAGGATGATGGACTTCGGGAATCTCTGGATAGATTCTATGAA
GTGTTTGGCCATTCTCAGCCAGCCTCTGGAAATCCACTCTCCACATCTGTCTGCCAGTGC
CTGTCTCAGAAAATCAGCGAACTGAAGAGCCAGGGGAACCAAGAGTACACCCTCCGTAGT
TTTCAACTGGCCCGGGTCATCTTCAACCGGGATGGCTGCTCCGTCCTACAGAGGCATTCC
AGGGACGCTCACTTCTGCCCACCAGGAGAAGGAGAAGAAAGTGCATCTCTGGAGGATGGA
AAACTGACCCCAGGACTTTCCAAAGATATCATTCACTTTCTCTTGCAGCAGAACGTGATG
AAAGACTTATAACTGGTGCCTGGTGGTGAGAGCAGGCACTTGGAGGGGAGCCCAGAGGCG
GATACTGTTGGTGCTCCACCCAGTTCTCANGCCAAGTAAATGCTTTGCAAGAGAAGGCTG
GCATCTGCGATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8IYI0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8IYI0_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               307-426, - strand, RNAz p=0.58618
               

               
               507-626, - strand, RNAz p=0.594674

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               307-426, - strand, RNAz p=0.58618
               

               
               507-626, - strand, RNAz p=0.594674

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               281-756, gnl|bosTau2|chr13 (33056242-33055773)
               

               
               281-756, gnl|canFam2|chr24 (18956640-18956283)
               

               
               281-756, gnl|dasNov1|scaffold_102568 (4455-4104)
               

               
               281-756, gnl|echTel1|scaffold_284768 (99284-98934)
               

               
               281-756, gnl|hg17|chr20 (5791616-5791980)
               

               
               281-756, gnl|Hg17|chr20 (5791667-5792125)
               

               
               281-756, gnl|loxAfr1|scaffold_28739 (8923-9291)
               

               
               281-756, gnl|mm7|chr2 (132491011-132491379)
               

               
               281-756, gnl|Mm7|chr2 (132491063-132491526)
               

               
               281-756, gnl|monDom2|scaffold_1 (36108238-36108601)
               

               
               281-756, gnl|oryCun1|scaffold_200763 (89504-89144)
               

               
               281-756, gnl|panTro1|chr21 (5771091-5771455)
               

               
               281-756, gnl|rheMac2|chr10 (39162761-39163125)
               

               
               281-756, gnl|rn3|chr3 (120441524-120441892)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               281-756, gnl|bosTau2|chr13 (33056242-33055773)
               

               
               281-756, gnl|canFam2|chr24 (18956640-18956283)
               

               
               281-756, gnl|dasNov1|scaffold_102568 (4455-4104)
               

               
               281-756, gnl|echTel1|scaffold_284768 (99284-98934)
               

               
               281-756, gnl|hg17|chr20 (5791616-5791980)
               

               
               281-756, gnl|Hg17|chr20 (5791667-5792125)
               

               
               281-756, gnl|loxAfr1|scaffold_28739 (8923-9291)
               

               
               281-756, gnl|mm7|chr2 (132491011-132491379)
               

               
               281-756, gnl|Mm7|chr2 (132491063-132491526)
               

               
               281-756, gnl|monDom2|scaffold_1 (36108238-36108601)
               

               
               281-756, gnl|oryCun1|scaffold_200763 (89504-89144)
               

               
               281-756, gnl|panTro1|chr21 (5771091-5771455)
               

               
               281-756, gnl|rheMac2|chr10 (39162761-39163125)
               

               
               281-756, gnl|rn3|chr3 (120441524-120441892)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	307-426, - strand, RNAz p=0.58618
	507-626, - strand, RNAz p=0.594674

	281-756, gnl\|bosTau2\|chr13 (33056242-33055773)
	281-756, gnl\|canFam2\|chr24 (18956640-18956283)
	281-756, gnl\|dasNov1\|scaffold_102568 (4455-4104)
	281-756, gnl\|echTel1\|scaffold_284768 (99284-98934)
	281-756, gnl\|hg17\|chr20 (5791616-5791980)
	281-756, gnl\|Hg17\|chr20 (5791667-5792125)
	281-756, gnl\|loxAfr1\|scaffold_28739 (8923-9291)
	281-756, gnl\|mm7\|chr2 (132491011-132491379)
	281-756, gnl\|Mm7\|chr2 (132491063-132491526)
	281-756, gnl\|monDom2\|scaffold_1 (36108238-36108601)
	281-756, gnl\|oryCun1\|scaffold_200763 (89504-89144)
	281-756, gnl\|panTro1\|chr21 (5771091-5771455)
	281-756, gnl\|rheMac2\|chr10 (39162761-39163125)
	281-756, gnl\|rn3\|chr3 (120441524-120441892)