Ss1.1-Liv1-LVR010049D05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTTTGGATATCATCTTGGAGAAGATGAAGGCTTCGGGCTTTGACTTCTCTCAAGTCCT CGCCTTGTCTGGGGCGGGCCAGCAACATGGAAGCGTGTACTGGAAGGCGGGGGCCAACCA GGTGCTGATGAGCCTGACACCAGACCTCCTGTTACGTGAGCAGCTGCAGGCCTGTTTCTC CATCAGTGACAGCCCCGTGTGGATGGATTCCAGTACCACAGCCCAGTGCCGCCAGCTGGA GGCCACCGTGGGTGGGGCCCAGGCTCTCAGCAGCCTCACTGGGTCCCGCGCCTACGAGCG ATTTACAGGAAACCAAATTGCAAAGATTTACCAGAAGAACCCGGAGGCCTACTCACGCAC AGAGAGAATTTCCTTGGTCAGTAGTTTTGCTGCTTCCCTGTTCCTTGGGTCTTACTCCCC TATTGACCACAGTGATGGTTCTGGAATGAATTTGTTGCAGATCCAGGACAAAGTCTGGTC ACAGGCTTGCCTTGGTGCCTGCGCACCTGGTTTAGAGGAGAAGCTCGGCCAGCCGGTGCC ATCATGCTCTGTTGTGGGAGCCATTTCTTCCTACTTCGTCCAGCGCTATGGGTTTCCTGC AGGATGCAAAGTGGTGGCCTTCACTGGGGACAACCCAGCATCGCTGGCAGGCATGAGGCT GGAGGAAGGTGACATTGCGGTCAGCCTGGGCACCAGCGACACCCTCTTTCTCTGGCTCCA GGAGCCTATGCCCGCCCTGGAAGGCCACATCTTCTGCAACCCAGTTGACCCCCAGCACTA CATGGCACTCCTGTGCTTTAAAAATGGCTCCCTCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTTTGGATATCATCTTGGAGAAGATGAAGGCTTCGGGCTTTGACTTCTCTCAAGTCCT CGCCTTGTCTGGGGCGGGCCAGCAACATGGAAGCGTGTACTGGAAGGCGGGGGCCAACCA GGTGCTGATGAGCCTGACACCAGACCTCCTGTTACGTGAGCAGCTGCAGGCCTGTTTCTC CATCAGTGACAGCCCCGTGTGGATGGATTCCAGTACCACAGCCCAGTGCCGCCAGCTGGA GGCCACCGTGGGTGGGGCCCAGGCTCTCAGCAGCCTCACTGGGTCCCGCGCCTACGAGCG ATTTACAGGAAACCAAATTGCAAAGATTTACCAGAAGAACCCGGAGGCCTACTCACGCAC AGAGAGAATTTCCTTGGTCAGTAGTTTTGCTGCTTCCCTGTTCCTTGGGTCTTACTCCCC TATTGACCACAGTGATGGTTCTGGAATGAATTTGTTGCAGATCCAGGACAAAGTCTGGTC ACAGGCTTGCCTTGGTGCCTGCGCACCTGGTTTAGAGGAGAAGCTCGGCCAGCCGGTGCC ATCATGCTCTGTTGTGGGAGCCATTTCTTCCTACTTCGTCCAGCGCTATGGGTTTCCTGC AGGATGCAAAGTGGTGGCCTTCACTGGGGACAACCCAGCATCGCTGGCAGGCATGAGGCT GGAGGAAGGTGACATTGCGGTCAGCCTGGGCACCAGCGACACCCTCTTTCTCTGGCTCCA GGAGCCTATGCCCGCCCTGGAAGGCCACATCTTCTGCAACCCAGTTGACCCCCAGCACTA CATGGCACTCCTGTGCTTTAAAAATGGCTCCCTCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 679-795, - strand, RNAz p=0.862813 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 679-795, - strand, RNAz p=0.862813 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 167-298, gnl|bosTau2|chr22 (8550878-8550747) | |
| 167-298, gnl|canFam2|chr23 (11149449-11149601) | |
| 167-298, gnl|danRer3|chrNA (88368851-88368983) | |
| 167-298, gnl|dasNov1|scaffold_36007 (9519-9655) | |
| 167-298, gnl|echTel1|scaffold_200582 (3539-3403) | |
| 167-298, gnl|fr1|chrUn (117213762-117213894) | |
| 167-298, gnl|galGal2|chr2 (5625432-5625296) | |
| 167-298, gnl|hg17|chr3 (38382101-38382237) | |
| 167-298, gnl|Hg17|chr3 (38382100-38382231) | |
| 167-298, gnl|mm7|chr9 (119048274-119048410) | |
| 167-298, gnl|Mm7|chr9 (119048273-119048404) | |
| 167-298, gnl|panTro1|chr2_random (34277047-34276911) | |
| 167-298, gnl|rheMac2|chr2 (98179587-98179451) | |
| 167-298, gnl|rn3|chr8 (124352097-124352233) | |
| 167-298, gnl|tetNig1|chrUn_random (924406-924539) | |
| 437-560, gnl|bosTau2|chr22 (8546020-8545897) | |
| 437-560, gnl|canFam2|chr23 (11153527-11153608) | |
| 437-560, gnl|dasNov1|scaffold_36007 (13569-13650) | |
| 437-560, gnl|echTel1|scaffold_282984 (84391-84310) | |
| 437-560, gnl|fr1|chrUn (117214825-117214906) | |
| 437-560, gnl|hg17|chr3 (38386549-38386630) | |
| 437-560, gnl|Hg17|chr3 (38386550-38386673) | |
| 437-560, gnl|loxAfr1|scaffold_52920 (10748-10667) | |
| 437-560, gnl|mm7|chr9 (119054502-119054583) | |
| 437-560, gnl|Mm7|chr9 (119054503-119054626) | |
| 437-560, gnl|panTro1|chr2 (39490815-39490896) | |
| 437-560, gnl|rheMac2|chr2 (98175161-98175082) | |
| 437-560, gnl|rn3|chr8 (124357717-124357798) | |
| 437-560, gnl|tetNig1|chrUn_random (925059-925140) | |
| 679-795, gnl|bosTau2|chr22 (8537785-8537669) | |
| 679-795, gnl|Hg17|chr3 (38391638-38391754) | |
| 679-795, gnl|Mm7|chr9 (119060787-119060903) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 167-298, gnl|bosTau2|chr22 (8550878-8550747) | |
| 167-298, gnl|canFam2|chr23 (11149449-11149601) | |
| 167-298, gnl|danRer3|chrNA (88368851-88368983) | |
| 167-298, gnl|dasNov1|scaffold_36007 (9519-9655) | |
| 167-298, gnl|echTel1|scaffold_200582 (3539-3403) | |
| 167-298, gnl|fr1|chrUn (117213762-117213894) | |
| 167-298, gnl|galGal2|chr2 (5625432-5625296) | |
| 167-298, gnl|hg17|chr3 (38382101-38382237) | |
| 167-298, gnl|Hg17|chr3 (38382100-38382231) | |
| 167-298, gnl|mm7|chr9 (119048274-119048410) | |
| 167-298, gnl|Mm7|chr9 (119048273-119048404) | |
| 167-298, gnl|panTro1|chr2_random (34277047-34276911) | |
| 167-298, gnl|rheMac2|chr2 (98179587-98179451) | |
| 167-298, gnl|rn3|chr8 (124352097-124352233) | |
| 167-298, gnl|tetNig1|chrUn_random (924406-924539) | |
| 437-560, gnl|bosTau2|chr22 (8546020-8545897) | |
| 437-560, gnl|canFam2|chr23 (11153527-11153608) | |
| 437-560, gnl|dasNov1|scaffold_36007 (13569-13650) | |
| 437-560, gnl|echTel1|scaffold_282984 (84391-84310) | |
| 437-560, gnl|fr1|chrUn (117214825-117214906) | |
| 437-560, gnl|hg17|chr3 (38386549-38386630) | |
| 437-560, gnl|Hg17|chr3 (38386550-38386673) | |
| 437-560, gnl|loxAfr1|scaffold_52920 (10748-10667) | |
| 437-560, gnl|mm7|chr9 (119054502-119054583) | |
| 437-560, gnl|Mm7|chr9 (119054503-119054626) | |
| 437-560, gnl|panTro1|chr2 (39490815-39490896) | |
| 437-560, gnl|rheMac2|chr2 (98175161-98175082) | |
| 437-560, gnl|rn3|chr8 (124357717-124357798) | |
| 437-560, gnl|tetNig1|chrUn_random (925059-925140) | |
| 679-795, gnl|bosTau2|chr22 (8537785-8537669) | |
| 679-795, gnl|Hg17|chr3 (38391638-38391754) | |
| 679-795, gnl|Mm7|chr9 (119060787-119060903) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.177588) | |
| cty (0.10408) |