Ss1.1-Liv1-LVR010049F07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAGACGCAAGATGGCGGACAGTGCGGAACTAAAGCAAATGGTTATGAGCCTTAGAGTTT CTGAACTCCAAGTACTGTTGGGCTACGCCGGGAGAAACAAGCACGGACGCAAACACGAAC TTCTCACAAAAGCCCTGCATTTGCTAAAGGCTGGCTGCAGTCCTGCTGTACAAATGAAAA TTAAAGAACTCTATAGGCGGAGGTTCCCCCAGAAAATCATGACGCCTGCGGACTTGTCCA TCCCCAGCGTACATTCAAGTCCTATGCCAGCAACTTTGTCTCCATCTACCATTCCACAGC TCACTTATGATGGTCACCCTGCATCATCACCGTTACTCCCTGTTTCTCTTTTGGGACCTA AACATGAACTGGAACTCCCACATCTTACATCAGCTCTTCACCCAGTCCATCCGGATATAA AACTTCAAAAATTACCATTTTATGATTTACTGGATGAACTGATAAAACCCACCAGTCTAG CATCAGACAACAGTCAGCGCTTTCGAGAAACCTGTTTTGCATTTGCCTTGACACCACAAC AAGTGCAGCAAATCAGTAGTTCCATGGATATTTCTGGGACCAAATGTGACTTCACAGTGC AGGTCCAGTTAAGGTTTTGTTTATCAGAAACCAGTTGTCCACAAGAAGATCACTTCCCAC CCAATCTTTGTGTGAAAGTGAATACAAAACCTTGCAGCCTTCCAGGTTATCTTCCACCTA CTAAAAATGGTGTGGAACCAAAGCGACCCAGCCGACCAATTAATATCACCTCACTTGTCC GATTGTCCACAACTGTACCAAACACCATTGTTGTTTCATGGACTGCAGAAATTGGGAGAA ACTATTCCATGGCAGTATATCTTGTAAAACAATTGTCCTCAACAGTTCTTCTTCAGAGGT TACGAGCAAAGAGAATAAGGAATCCGGATCATTCTAGAGCTTTAATTAAAGAGAAATTGA CTGCGGATCCAGACAGTGAAATAGCTACAACCAGCCTGAGGGTTTCTCTACTATGTCCAC TTGGGAAAATGCGGCTGACAATTCCATGTCGGGCCCTTACATGTTCTCATCTGCAGTGTT TTGATGCAACTCTTTATATTCAGATGAATGAGAAAAAACCAACCTGGGTTTGTCCTGTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAGACGCAAGATGGCGGACAGTGCGGAACTAAAGCAAATGGTTATGAGCCTTAGAGTTT CTGAACTCCAAGTACTGTTGGGCTACGCCGGGAGAAACAAGCACGGACGCAAACACGAAC TTCTCACAAAAGCCCTGCATTTGCTAAAGGCTGGCTGCAGTCCTGCTGTACAAATGAAAA TTAAAGAACTCTATAGGCGGAGGTTCCCCCAGAAAATCATGACGCCTGCGGACTTGTCCA TCCCCAGCGTACATTCAAGTCCTATGCCAGCAACTTTGTCTCCATCTACCATTCCACAGC TCACTTATGATGGTCACCCTGCATCATCACCGTTACTCCCTGTTTCTCTTTTGGGACCTA AACATGAACTGGAACTCCCACATCTTACATCAGCTCTTCACCCAGTCCATCCGGATATAA AACTTCAAAAATTACCATTTTATGATTTACTGGATGAACTGATAAAACCCACCAGTCTAG CATCAGACAACAGTCAGCGCTTTCGAGAAACCTGTTTTGCATTTGCCTTGACACCACAAC AAGTGCAGCAAATCAGTAGTTCCATGGATATTTCTGGGACCAAATGTGACTTCACAGTGC AGGTCCAGTTAAGGTTTTGTTTATCAGAAACCAGTTGTCCACAAGAAGATCACTTCCCAC CCAATCTTTGTGTGAAAGTGAATACAAAACCTTGCAGCCTTCCAGGTTATCTTCCACCTA CTAAAAATGGTGTGGAACCAAAGCGACCCAGCCGACCAATTAATATCACCTCACTTGTCC GATTGTCCACAACTGTACCAAACACCATTGTTGTTTCATGGACTGCAGAAATTGGGAGAA ACTATTCCATGGCAGTATATCTTGTAAAACAATTGTCCTCAACAGTTCTTCTTCAGAGGT TACGAGCAAAGAGAATAAGGAATCCGGATCATTCTAGAGCTTTAATTAAAGAGAAATTGA CTGCGGATCCAGACAGTGAAATAGCTACAACCAGCCTGAGGGTTTCTCTACTATGTCCAC TTGGGAAAATGCGGCTGACAATTCCATGTCGGGCCCTTACATGTTCTCATCTGCAGTGTT TTGATGCAACTCTTTATATTCAGATGAATGAGAAAAAACCAACCTGGGTTTGTCCTGTCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 352-471, - strand, RNAz p=0.922634 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 352-471, - strand, RNAz p=0.922634 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 33-480, gnl|bosTau2|chr10 (10033023-10032576) | |
| 33-480, gnl|Hg17|chr15 (66165695-66166142) | |
| 33-480, gnl|Mm7|chr9 (62980558-62980111) | |
| 705-839, gnl|bosTau2|chr10 (7818312-7818178) | |
| 705-839, gnl|Hg17|chr15 (66225958-66226092) | |
| 705-839, gnl|Mm7|chr9 (62947840-62947706) | |
| 840-948, gnl|bosTau2|chr10 (9957535-9957427) | |
| 840-948, gnl|canFam2|chr30 (35190652-35190777) | |
| 840-948, gnl|danRer3|chr7 (26158947-26159067) | |
| 840-948, gnl|dasNov1|scaffold_75052 (1081-956) | |
| 840-948, gnl|echTel1|scaffold_230152 (840-955) | |
| 840-948, gnl|fr1|chrUn (122272376-122272492) | |
| 840-948, gnl|galGal2|chr10 (19802211-19802337) | |
| 840-948, gnl|hg17|chr15 (66232980-66233105) | |
| 840-948, gnl|Hg17|chr15 (66232982-66233090) | |
| 840-948, gnl|loxAfr1|scaffold_89702 (1483-1358) | |
| 840-948, gnl|mm7|chr9 (62941214-62941089) | |
| 840-948, gnl|Mm7|chr9 (62941210-62941102) | |
| 840-948, gnl|monDom2|scaffold_12 (43987079-43986957) | |
| 840-948, gnl|oryCun1|scaffold_116719 (502-374) | |
| 840-948, gnl|panTro1|chr16 (66742614-66742739) | |
| 840-948, gnl|rheMac2|chr7 (46751898-46752023) | |
| 840-948, gnl|rn3|chr8 (67074760-67074635) | |
| 840-948, gnl|tetNig1|chr13 (7745269-7745383) | |
| 1020-1140, gnl|bosTau2|chr10 (9936387-9936267) | |
| 1020-1140, gnl|canFam2|chr30 (35211064-35211239) | |
| 1020-1140, gnl|danRer3|chr18 (24154012-24154188) | |
| 1020-1140, gnl|dasNov1|scaffold_139780 (1677-1851) | |
| 1020-1140, gnl|echTel1|scaffold_308478 (26047-26221) | |
| 1020-1140, gnl|fr1|chrUn (122272860-122273024) | |
| 1020-1140, gnl|galGal2|chr10 (19809013-19809181) | |
| 1020-1140, gnl|hg17|chr15 (66253123-66253297) | |
| 1020-1140, gnl|Hg17|chr15 (66253124-66253244) | |
| 1020-1140, gnl|loxAfr1|scaffold_56643 (8588-8414) | |
| 1020-1140, gnl|mm7|chr9 (62924349-62924174) | |
| 1020-1140, gnl|Mm7|chr9 (62924346-62924226) | |
| 1020-1140, gnl|monDom2|scaffold_12 (43963450-43963276) | |
| 1020-1140, gnl|oryCun1|scaffold_193828 (12869-12694) | |
| 1020-1140, gnl|panTro1|chr16 (66762782-66762956) | |
| 1020-1140, gnl|rheMac2|chr7 (46772408-46772582) | |
| 1020-1140, gnl|rn3|chr8 (67058126-67057951) | |
| 1020-1140, gnl|tetNig1|chr13 (7745770-7745935) | |
| 1020-1140, gnl|xenTro1|scaffold_5 (283604-283774) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 33-480, gnl|bosTau2|chr10 (10033023-10032576) | |
| 33-480, gnl|Hg17|chr15 (66165695-66166142) | |
| 33-480, gnl|Mm7|chr9 (62980558-62980111) | |
| 705-839, gnl|bosTau2|chr10 (7818312-7818178) | |
| 705-839, gnl|Hg17|chr15 (66225958-66226092) | |
| 705-839, gnl|Mm7|chr9 (62947840-62947706) | |
| 840-948, gnl|bosTau2|chr10 (9957535-9957427) | |
| 840-948, gnl|canFam2|chr30 (35190652-35190777) | |
| 840-948, gnl|danRer3|chr7 (26158947-26159067) | |
| 840-948, gnl|dasNov1|scaffold_75052 (1081-956) | |
| 840-948, gnl|echTel1|scaffold_230152 (840-955) | |
| 840-948, gnl|fr1|chrUn (122272376-122272492) | |
| 840-948, gnl|galGal2|chr10 (19802211-19802337) | |
| 840-948, gnl|hg17|chr15 (66232980-66233105) | |
| 840-948, gnl|Hg17|chr15 (66232982-66233090) | |
| 840-948, gnl|loxAfr1|scaffold_89702 (1483-1358) | |
| 840-948, gnl|mm7|chr9 (62941214-62941089) | |
| 840-948, gnl|Mm7|chr9 (62941210-62941102) | |
| 840-948, gnl|monDom2|scaffold_12 (43987079-43986957) | |
| 840-948, gnl|oryCun1|scaffold_116719 (502-374) | |
| 840-948, gnl|panTro1|chr16 (66742614-66742739) | |
| 840-948, gnl|rheMac2|chr7 (46751898-46752023) | |
| 840-948, gnl|rn3|chr8 (67074760-67074635) | |
| 840-948, gnl|tetNig1|chr13 (7745269-7745383) | |
| 1020-1140, gnl|bosTau2|chr10 (9936387-9936267) | |
| 1020-1140, gnl|canFam2|chr30 (35211064-35211239) | |
| 1020-1140, gnl|danRer3|chr18 (24154012-24154188) | |
| 1020-1140, gnl|dasNov1|scaffold_139780 (1677-1851) | |
| 1020-1140, gnl|echTel1|scaffold_308478 (26047-26221) | |
| 1020-1140, gnl|fr1|chrUn (122272860-122273024) | |
| 1020-1140, gnl|galGal2|chr10 (19809013-19809181) | |
| 1020-1140, gnl|hg17|chr15 (66253123-66253297) | |
| 1020-1140, gnl|Hg17|chr15 (66253124-66253244) | |
| 1020-1140, gnl|loxAfr1|scaffold_56643 (8588-8414) | |
| 1020-1140, gnl|mm7|chr9 (62924349-62924174) | |
| 1020-1140, gnl|Mm7|chr9 (62924346-62924226) | |
| 1020-1140, gnl|monDom2|scaffold_12 (43963450-43963276) | |
| 1020-1140, gnl|oryCun1|scaffold_193828 (12869-12694) | |
| 1020-1140, gnl|panTro1|chr16 (66762782-66762956) | |
| 1020-1140, gnl|rheMac2|chr7 (46772408-46772582) | |
| 1020-1140, gnl|rn3|chr8 (67058126-67057951) | |
| 1020-1140, gnl|tetNig1|chr13 (7745770-7745935) | |
| 1020-1140, gnl|xenTro1|scaffold_5 (283604-283774) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| sin (0.174948) | |
| lnt (0.142308) | |
| eep (0.122564) | |
| cbl (0.114797) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.174948) | |
| lnt (0.142308) | |
| eep (0.122564) | |
| cbl (0.114797) |