Ss1.1-Liv1-LVR010050C11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAGATGGCGCTGCGTCTGCTGAGGAGGGCGGCGCGTGGAGCGGCGGCCGCGGCGGCGC TGCCAAGGCTGAGAGCATCTCTGGCAACTGATGTGTCCAGTCTCAGGCACAGTTCCTCAC CCAGTCACAAGTACATTCCCCGGAGGGCAGTGCTCTATGTACCTGGAAATGATGAGAAGA AAATAAAGAAGATTCCCTCCCTGAATGTAGATTGTGCGGTGCTCGACTGTGAGGATGGTG TGGCTGTGAACAAAAAGAATGAAGCTCGATTGAGAATAGTGAAAACTCTTGAAGACTTTG ATCTGGGCCCAACTGAAAAGTGTGTGAGAATCAACTCGGTGTCCAGTGGTCTGGCTGAAG AAGACCTGGAGGTCCTCCTGCAGTCCCGGGTCCTTCCTTCCAGCCTGATGCTCCCAAAGG TGGAAGGTCCTGAAGAAATCCGGTGGTTTTCAGACAAATTTTCACTCTACTTAAAAGGCC GCAAACTTGAACAACCTATGAATTTAATCCCTTTTGTGGAAACTGCAATGGGTTTGCTCA ATTTTAAGGCCGTGTGTGAAGAAGCTCTAAAGAACGGGCCTCAAGTGGGTCTTTCTCTAG ATGCAGTCGTTTTTGGAGGAGAAGACTTTCGAGCCAGCATAGGTGCAACAAGTCGTAAGG AAACGCAGGACATCCTCTACGCCCGACAAAAGATTATCGTTGTAGCCAAGGCCTTCGGGC TCCAGGCCATCGACCTGGTGTACATCGACTTCCGGGATGGAGAGGGGCTTCTCAAGCAGG CGCGAGAGGGAGCTGCGATGGGATTCACTGGTAAGCAGGTGATACACCCTAACCAAATCG CAGTGGTCCAGCAGCAGTTTTCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAGATGGCGCTGCGTCTGCTGAGGAGGGCGGCGCGTGGAGCGGCGGCCGCGGCGGCGC TGCCAAGGCTGAGAGCATCTCTGGCAACTGATGTGTCCAGTCTCAGGCACAGTTCCTCAC CCAGTCACAAGTACATTCCCCGGAGGGCAGTGCTCTATGTACCTGGAAATGATGAGAAGA AAATAAAGAAGATTCCCTCCCTGAATGTAGATTGTGCGGTGCTCGACTGTGAGGATGGTG TGGCTGTGAACAAAAAGAATGAAGCTCGATTGAGAATAGTGAAAACTCTTGAAGACTTTG ATCTGGGCCCAACTGAAAAGTGTGTGAGAATCAACTCGGTGTCCAGTGGTCTGGCTGAAG AAGACCTGGAGGTCCTCCTGCAGTCCCGGGTCCTTCCTTCCAGCCTGATGCTCCCAAAGG TGGAAGGTCCTGAAGAAATCCGGTGGTTTTCAGACAAATTTTCACTCTACTTAAAAGGCC GCAAACTTGAACAACCTATGAATTTAATCCCTTTTGTGGAAACTGCAATGGGTTTGCTCA ATTTTAAGGCCGTGTGTGAAGAAGCTCTAAAGAACGGGCCTCAAGTGGGTCTTTCTCTAG ATGCAGTCGTTTTTGGAGGAGAAGACTTTCGAGCCAGCATAGGTGCAACAAGTCGTAAGG AAACGCAGGACATCCTCTACGCCCGACAAAAGATTATCGTTGTAGCCAAGGCCTTCGGGC TCCAGGCCATCGACCTGGTGTACATCGACTTCCGGGATGGAGAGGGGCTTCTCAAGCAGG CGCGAGAGGGAGCTGCGATGGGATTCACTGGTAAGCAGGTGATACACCCTAACCAAATCG CAGTGGTCCAGCAGCAGTTTTCTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 256-446, gnl|bosTau2|chr12 (40362941-40363131) | |
| 256-446, gnl|canFam2|chr22 (52782129-52782346) | |
| 256-446, gnl|danRer3|chr9 (29671734-29671931) | |
| 256-446, gnl|dasNov1|scaffold_36071 (215-4) | |
| 256-446, gnl|echTel1|scaffold_311220 (83169-83386) | |
| 256-446, gnl|fr1|chrUn (277694352-277694557) | |
| 256-446, gnl|galGal2|chr1 (136998742-136998504) | |
| 256-446, gnl|hg17|chr13 (99309111-99309328) | |
| 256-446, gnl|Hg17|chr13 (99309114-99309304) | |
| 256-446, gnl|loxAfr1|scaffold_21653 (37009-37229) | |
| 256-446, gnl|mm7|chr14 (116775852-116776070) | |
| 256-446, gnl|Mm7|chr14 (116775855-116776045) | |
| 256-446, gnl|monDom2|scaffold_11 (52281800-52281584) | |
| 256-446, gnl|oryCun1|scaffold_208150 (23074-22864) | |
| 256-446, gnl|panTro1|chr14 (82637223-82637440) | |
| 256-446, gnl|rheMac2|chr17 (80207692-80207909) | |
| 256-446, gnl|rn3|chr15 (107521855-107522070) | |
| 256-446, gnl|tetNig1|chr2 (7834158-7833956) | |
| 256-446, gnl|xenTro1|scaffold_313 (1035838-1035623) | |
| 448-549, gnl|bosTau2|chr12 (40367039-40367140) | |
| 448-549, gnl|canFam2|chr22 (52786255-52786385) | |
| 448-549, gnl|danRer3|chr9 (29680311-29680436) | |
| 448-549, gnl|dasNov1|scaffold_1885 (118840-118969) | |
| 448-549, gnl|echTel1|scaffold_311220 (87539-87669) | |
| 448-549, gnl|fr1|chrUn (277699018-277699128) | |
| 448-549, gnl|galGal2|chr1 (136995270-136995143) | |
| 448-549, gnl|hg17|chr13 (99313225-99313355) | |
| 448-549, gnl|Hg17|chr13 (99313247-99313348) | |
| 448-549, gnl|loxAfr1|scaffold_21653 (41213-41342) | |
| 448-549, gnl|mm7|chr14 (116780477-116780607) | |
| 448-549, gnl|Mm7|chr14 (116780499-116780600) | |
| 448-549, gnl|monDom2|scaffold_11 (52278000-52277866) | |
| 448-549, gnl|oryCun1|scaffold_208150 (18685-18555) | |
| 448-549, gnl|panTro1|chr14 (82641331-82641461) | |
| 448-549, gnl|rheMac2|chr17 (80212070-80212200) | |
| 448-549, gnl|rn3|chr15 (107526529-107526659) | |
| 448-549, gnl|tetNig1|chr2 (7829659-7829549) | |
| 448-549, gnl|xenTro1|scaffold_313 (1023288-1023162) | |
| 641-813, gnl|bosTau2|chr12 (40370264-40370436) | |
| 641-813, gnl|Hg17|chr13 (99316493-99316665) | |
| 641-813, gnl|Mm7|chr14 (116783817-116783989) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 256-446, gnl|bosTau2|chr12 (40362941-40363131) | |
| 256-446, gnl|canFam2|chr22 (52782129-52782346) | |
| 256-446, gnl|danRer3|chr9 (29671734-29671931) | |
| 256-446, gnl|dasNov1|scaffold_36071 (215-4) | |
| 256-446, gnl|echTel1|scaffold_311220 (83169-83386) | |
| 256-446, gnl|fr1|chrUn (277694352-277694557) | |
| 256-446, gnl|galGal2|chr1 (136998742-136998504) | |
| 256-446, gnl|hg17|chr13 (99309111-99309328) | |
| 256-446, gnl|Hg17|chr13 (99309114-99309304) | |
| 256-446, gnl|loxAfr1|scaffold_21653 (37009-37229) | |
| 256-446, gnl|mm7|chr14 (116775852-116776070) | |
| 256-446, gnl|Mm7|chr14 (116775855-116776045) | |
| 256-446, gnl|monDom2|scaffold_11 (52281800-52281584) | |
| 256-446, gnl|oryCun1|scaffold_208150 (23074-22864) | |
| 256-446, gnl|panTro1|chr14 (82637223-82637440) | |
| 256-446, gnl|rheMac2|chr17 (80207692-80207909) | |
| 256-446, gnl|rn3|chr15 (107521855-107522070) | |
| 256-446, gnl|tetNig1|chr2 (7834158-7833956) | |
| 256-446, gnl|xenTro1|scaffold_313 (1035838-1035623) | |
| 448-549, gnl|bosTau2|chr12 (40367039-40367140) | |
| 448-549, gnl|canFam2|chr22 (52786255-52786385) | |
| 448-549, gnl|danRer3|chr9 (29680311-29680436) | |
| 448-549, gnl|dasNov1|scaffold_1885 (118840-118969) | |
| 448-549, gnl|echTel1|scaffold_311220 (87539-87669) | |
| 448-549, gnl|fr1|chrUn (277699018-277699128) | |
| 448-549, gnl|galGal2|chr1 (136995270-136995143) | |
| 448-549, gnl|hg17|chr13 (99313225-99313355) | |
| 448-549, gnl|Hg17|chr13 (99313247-99313348) | |
| 448-549, gnl|loxAfr1|scaffold_21653 (41213-41342) | |
| 448-549, gnl|mm7|chr14 (116780477-116780607) | |
| 448-549, gnl|Mm7|chr14 (116780499-116780600) | |
| 448-549, gnl|monDom2|scaffold_11 (52278000-52277866) | |
| 448-549, gnl|oryCun1|scaffold_208150 (18685-18555) | |
| 448-549, gnl|panTro1|chr14 (82641331-82641461) | |
| 448-549, gnl|rheMac2|chr17 (80212070-80212200) | |
| 448-549, gnl|rn3|chr15 (107526529-107526659) | |
| 448-549, gnl|tetNig1|chr2 (7829659-7829549) | |
| 448-549, gnl|xenTro1|scaffold_313 (1023288-1023162) | |
| 641-813, gnl|bosTau2|chr12 (40370264-40370436) | |
| 641-813, gnl|Hg17|chr13 (99316493-99316665) | |
| 641-813, gnl|Mm7|chr14 (116783817-116783989) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.118483) |