Non-Coding RNA Search

Ss1.1-Liv1-LVR010050E06.5

Sequence:


               
               AACTCTTCACCCAGAGGCACCGCCGCGCAGGAGCCAAGCCGCCGCTATGGACGTCCCGCC
GCTGGCGGGCAAGATCGCAGTTCTGTCGCTCGGCGCCCTCCCGTTGTCCTACGCGCTCAA
CCACCTCTCGGCGCTCTCATACTCCCTGGGGGTGGTGTTGATGAGCGCCCTGATCCTGGG
TCTGCTATTCTTGGCTATATACAGCTTGTCCCGCAGTGACATTTACTACGACCCACTCTA
TGCTGTCTTTGCAGTCTTCGCCTTCACCTCCGTGGTGGACCTCCTTATTGCTCTCCAGGA
AGATGGCTATGTGGGAGGCTTCATGGAGTTCTACACTAAGGAGGGTGAGTCATACCTTCG
CACAGCACACGGGCTCTTCATCTGCTACTGGGATGGCATTGTTCACTACCTCCTCTACCT
GGCCATGGCCGGTGCCATCCGTAAAAGGAAAAGGTACCGGAACTTTGGACTCTACTGGCT
GGGATCCTTTGTCATGAGCCTCCTGGTCTTCCTCCCAGGAAACATCCTTGGCAAATACAG
CTCAGAGATCAGGCCCACCTTTTTCCTCACCATCCCCTACATGCTGGTCCCATGCTGGGC
TGGCTTTAGGGTCTTCAACCAGACCCAGGCATCAACCTGCTGCACCCCCAACATGGTGCA
GGAGGAGCAAAGAAAGAGCCTTCTGTGGCGCCCAATTGACCTGGCCCTCATCATATATCT
CACTTTTGCTGCATTCTTCACCCTCTTTCGGGGCCTGGTGGTGCTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTCTTCACCCAGAGGCACCGCCGCGCAGGAGCCAAGCCGCCGCTATGGACGTCCCGCC
GCTGGCGGGCAAGATCGCAGTTCTGTCGCTCGGCGCCCTCCCGTTGTCCTACGCGCTCAA
CCACCTCTCGGCGCTCTCATACTCCCTGGGGGTGGTGTTGATGAGCGCCCTGATCCTGGG
TCTGCTATTCTTGGCTATATACAGCTTGTCCCGCAGTGACATTTACTACGACCCACTCTA
TGCTGTCTTTGCAGTCTTCGCCTTCACCTCCGTGGTGGACCTCCTTATTGCTCTCCAGGA
AGATGGCTATGTGGGAGGCTTCATGGAGTTCTACACTAAGGAGGGTGAGTCATACCTTCG
CACAGCACACGGGCTCTTCATCTGCTACTGGGATGGCATTGTTCACTACCTCCTCTACCT
GGCCATGGCCGGTGCCATCCGTAAAAGGAAAAGGTACCGGAACTTTGGACTCTACTGGCT
GGGATCCTTTGTCATGAGCCTCCTGGTCTTCCTCCCAGGAAACATCCTTGGCAAATACAG
CTCAGAGATCAGGCCCACCTTTTTCCTCACCATCCCCTACATGCTGGTCCCATGCTGGGC
TGGCTTTAGGGTCTTCAACCAGACCCAGGCATCAACCTGCTGCACCCCCAACATGGTGCA
GGAGGAGCAAAGAAAGAGCCTTCTGTGGCGCCCAATTGACCTGGCCCTCATCATATATCT
CACTTTTGCTGCATTCTTCACCCTCTTTCGGGGCCTGGTGGTGCTTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|48375171|ref|NP_001001524.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|48375171|ref|NP_001001524.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               530-658, - strand, RNAz p=0.843596

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               530-658, - strand, RNAz p=0.843596

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               38-152, gnl|bosTau2|chr7 (4171351-4171465)
               

               
               38-152, gnl|Hg17|chr19 (19245033-19244919)
               

               
               38-152, gnl|Mm7|chr8 (68528086-68528195)
               


               
               342-448, gnl|bosTau2|chr7 (2688344-2688238)
               

               
               342-448, gnl|Hg17|chr19 (19242087-19241981)
               

               
               342-448, gnl|Mm7|chr8 (68530598-68530704)
               


               
               530-658, gnl|bosTau2|chr7 (2687116-2686988)
               

               
               530-658, gnl|Hg17|chr19 (19240564-19240436)
               

               
               530-658, gnl|Mm7|chr8 (68532489-68532617)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-152, gnl|bosTau2|chr7 (4171351-4171465)
               

               
               38-152, gnl|Hg17|chr19 (19245033-19244919)
               

               
               38-152, gnl|Mm7|chr8 (68528086-68528195)
               


               
               342-448, gnl|bosTau2|chr7 (2688344-2688238)
               

               
               342-448, gnl|Hg17|chr19 (19242087-19241981)
               

               
               342-448, gnl|Mm7|chr8 (68530598-68530704)
               


               
               530-658, gnl|bosTau2|chr7 (2687116-2686988)
               

               
               530-658, gnl|Hg17|chr19 (19240564-19240436)
               

               
               530-658, gnl|Mm7|chr8 (68532489-68532617)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ill (0.175593)
               

               
               nje (0.16592)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               jej (0.0989218)

	38-152, gnl\|bosTau2\|chr7 (4171351-4171465)
	38-152, gnl\|Hg17\|chr19 (19245033-19244919)
	38-152, gnl\|Mm7\|chr8 (68528086-68528195)

	342-448, gnl\|bosTau2\|chr7 (2688344-2688238)
	342-448, gnl\|Hg17\|chr19 (19242087-19241981)
	342-448, gnl\|Mm7\|chr8 (68530598-68530704)

	530-658, gnl\|bosTau2\|chr7 (2687116-2686988)
	530-658, gnl\|Hg17\|chr19 (19240564-19240436)
	530-658, gnl\|Mm7\|chr8 (68532489-68532617)