Non-Coding RNA Search

Ss1.1-Liv1-LVR010050F02.5

Sequence:


               
               AGAGGAATTGGGTGTTCCTGAATATAATCAGTTCTTACAGGTGGATGCCTTAAGCCTGAC
TTGGTTTTGAAAGGAAATTTGGTTCTGAAATTTTAAAACCTTTTTGGGAAAGATTGGAAT
AGTTAGAAAACAAAGATTTTTTTGGAATAATGCTGACTCCTCTTTTCTCAATGACATAGA
TCCATCTTGAAGCACAAAAATTGAAAACAAACTCTTCCTCATTGTGCCAACCTATAAATT
CCATGGGGATTTCCCAAGTGCCAAGCCTTGTTCTGACCTAGTGTTCACTGCTTTGGGATA
TTGCTTTTGCCATCAGTCCCATCCAGCCAAGCGACAACTTATCAAGATTTAAAGAAATTT
TTCTCAGCAAGATGCATTTGCCAGTTTCTGCTTCATAGGACGCGCCACCCACAGGAAACC
TTCCCTCCCCCGTTGAGAAGGATGCCCAGAACTGTGGGGGGACCAGGTTGCAGTCTCCTG
CTAGTCACCTGGTGAAGCTTTTGCTTACTCTGCAGAAGGGAGGTGGCAGAAACCCATTCC
ACTTGTCTCAGAAACCTGCAGGTGATTAGCTTTAAAAAAAAATGATAAGTTCTGGTAGGG
CTGCAGAGGCCTCAGCTCAGTGGGGGGTGGAAAGAGTGCTACTTCACAGAATGAAACTGT
TGCAATCACATCCGTCATTTCAGGTGAGGTCAGATAAGGTAATTGGAAAGATAAAAGTCG
TCCTGCAGTTTCAGAGAGGTCTCCTGAAAGTGTTGAGAAATGGTTGAAGTTCAGAAGTTT
ATTTGAAGCTTTGTTCCCCTTCCGCTTATAAACAAGACAGGTATTCTTTAGTCACACTTT
TCTTTTTGATGGTCAGAAGTCATGGCCGGCGACTGAGACGGTCTGATCTGCTGGCCGTGG
CAGGTTTGTCGTGTGGATCTTCCGCTTTCTGCATTGGTGGAGGTGAATGAATAAGCTTTG
GCTAGCTGCCACCTGCCACTCAGCAAGACAGCACCTCGAGGCTTCTCCCCTCTGCTCTTG
CTTGGGGAAGTGTTTGGGGAGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGAATTGGGTGTTCCTGAATATAATCAGTTCTTACAGGTGGATGCCTTAAGCCTGAC
TTGGTTTTGAAAGGAAATTTGGTTCTGAAATTTTAAAACCTTTTTGGGAAAGATTGGAAT
AGTTAGAAAACAAAGATTTTTTTGGAATAATGCTGACTCCTCTTTTCTCAATGACATAGA
TCCATCTTGAAGCACAAAAATTGAAAACAAACTCTTCCTCATTGTGCCAACCTATAAATT
CCATGGGGATTTCCCAAGTGCCAAGCCTTGTTCTGACCTAGTGTTCACTGCTTTGGGATA
TTGCTTTTGCCATCAGTCCCATCCAGCCAAGCGACAACTTATCAAGATTTAAAGAAATTT
TTCTCAGCAAGATGCATTTGCCAGTTTCTGCTTCATAGGACGCGCCACCCACAGGAAACC
TTCCCTCCCCCGTTGAGAAGGATGCCCAGAACTGTGGGGGGACCAGGTTGCAGTCTCCTG
CTAGTCACCTGGTGAAGCTTTTGCTTACTCTGCAGAAGGGAGGTGGCAGAAACCCATTCC
ACTTGTCTCAGAAACCTGCAGGTGATTAGCTTTAAAAAAAAATGATAAGTTCTGGTAGGG
CTGCAGAGGCCTCAGCTCAGTGGGGGGTGGAAAGAGTGCTACTTCACAGAATGAAACTGT
TGCAATCACATCCGTCATTTCAGGTGAGGTCAGATAAGGTAATTGGAAAGATAAAAGTCG
TCCTGCAGTTTCAGAGAGGTCTCCTGAAAGTGTTGAGAAATGGTTGAAGTTCAGAAGTTT
ATTTGAAGCTTTGTTCCCCTTCCGCTTATAAACAAGACAGGTATTCTTTAGTCACACTTT
TCTTTTTGATGGTCAGAAGTCATGGCCGGCGACTGAGACGGTCTGATCTGCTGGCCGTGG
CAGGTTTGTCGTGTGGATCTTCCGCTTTCTGCATTGGTGGAGGTGAATGAATAAGCTTTG
GCTAGCTGCCACCTGCCACTCAGCAAGACAGCACCTCGAGGCTTCTCCCCTCTGCTCTTG
CTTGGGGAAGTGTTTGGGGAGTAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               32-1040, gnl|bosTau2|chr19 (1109428-1108413)
               

               
               32-1040, gnl|Hg17|chr17 (50718858-50719872)
               

               
               32-1040, gnl|Mm7|chr11 (90478063-90476994)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-1040, gnl|bosTau2|chr19 (1109428-1108413)
               

               
               32-1040, gnl|Hg17|chr17 (50718858-50719872)
               

               
               32-1040, gnl|Mm7|chr11 (90478063-90476994)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sin (0.174948)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)

	32-1040, gnl\|bosTau2\|chr19 (1109428-1108413)
	32-1040, gnl\|Hg17\|chr17 (50718858-50719872)
	32-1040, gnl\|Mm7\|chr11 (90478063-90476994)