Ss1.1-Liv1-LVR010050G11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTAGCAGGCCCCACGCCGCCGCCACCGCCACCCGCTGCCTCTGCCTCCGGGGCCTCCGCC GCTGCGGGGCCACCATGCTCCTGCCCAGGCCTGGAGACTGACCCCTAAAACCGGCACCGT GTCTCAGCTCTGCCCCCACCCGCCGGACCCCAGGGTCCCGCCCCGGCCCAGGAGGTCAGC CGGGGGATCATTAACTAGAGGCCGTGACATGGCGGAGAAAGAGGGTGGCCAGCCTGTGTC ATGCTGCTCCGGACCCAAGGTGGCAGCTCTCACTGTGGGGACCGTGCTGCTCCTGACAGG CATTGGGGCAGCGTCCTGGGCCATTGTGACCGTTCTACTCAGGAGTGATCAGGAGCCGCT GTATCCAGTGCAGGTCGGCCCCGGGGATTCTCGGCTCACCGTGTTTGATGAGACGGAGGG CACGTGGCGCCTGCTGTGCTCCTCGCGCTCCAACGCCAGGGTGGCAGGGCTCAGCTGCGA GGAGATGGGCTTCCTCAGGTCACTGACCCACTCAGAGCTGGATGTGCGGACTGCGGGCGC CAACGGCACGTCGGGCTTCTTCTGTGTGGATGAGGGGAGGCTGCCGCAGGCCCGGAGGCT GCTTGAGGTCCTCTCCGTGTGCGACTGTCCCAGGGGCCATTTCCTGGCAACCACATGCCA AGACTGCGGCCATAGGAAGCTGCCCGTGGATCGCATTGTGGGCGGTCAGGACACCAGCCT GGGCCGGTGGCCGTGGCAAGTCAGTCTTCGCTACGACGGAGCACACCTCTGTGGGGGATC CCTGCTCTCCAAAGACTGGGTGCTGACAGCCGCCCACTGCTTCCCCGAGCGGAACCGGGT CCTGTCTCGATGGCGAGTATTCGCCGGTGCTGTGGCCCAGACCTCACCCCACGGCCTGCA GATGGGGGTGCAGGCGGTGATCTACCATGGGGACTATCTCCCCTTTCGAGACCCCAACAG CGAGGAGAACAGCAATGATATCGCCCTGGTCCACCTCTCCAGCTCCCTGGTCCTCACAGA ATACATCCAGCCCGTGTGCCTCCCGGCTGCCGGCCAAGCCCTGGTGGACGGCAAGATCTG CACGGTGACAGGCTGGGGCAACACGCAGTACTACGGCCAACAGGCTGGGGTGCTCCAGGA GGCCCGAGTCCCCATAATCAGCAATGATGTCTGCAATGGCCCCGACTTCTACGGAAACCA GATCAAGCCCAAGATGTTCTGTGCCGGCTACCCTGAGGGTGGCATTGACGCCTGCCAGGG TGACAGTGGTGGCCCCTTCGTGTGTGAGGACAGCATCTCTCGGACGCCACGCTGGCGGCT GTGTGGCATCGTGAGCTGGGGCACCGGCTGTGCCCTGGCCCAAAAGCCAGGCGTCTACAC CAAAGTCAGTGACTTCCGGGAGTGGATCTTCCAGGCCATAAAGACTCACTCCGAAGCCAG CGGCATGGTGACCCAGCTCTGACCTGCGGCTTCTGCTCGCTGCGCTCGCCTCCAGGGCCC AAGCTGATCCAGGTGGCTCCAGCCCCTCATGATGGGGTTCACCCTGGGCCTGGGATAGAA CATTTTTCTTCTTGGGCCCAGCCCACAGGTCCAAGGATACCCTCCCTCCAAGGTCCTCTC TTCCACAGTGGCGGGCCCACTCAGCCCTGGCATCACCCGAGCCTCACCCTCCTGACCCCC ATGTAAATATTGTTCTGCCATCTGGGGGCCCCTATCTAGTGCCCCTGATGACAGGATGCT CTTTAAATAATAAAGATGGTTTTGATTAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTAGCAGGCCCCACGCCGCCGCCACCGCCACCCGCTGCCTCTGCCTCCGGGGCCTCCGCC GCTGCGGGGCCACCATGCTCCTGCCCAGGCCTGGAGACTGACCCCTAAAACCGGCACCGT GTCTCAGCTCTGCCCCCACCCGCCGGACCCCAGGGTCCCGCCCCGGCCCAGGAGGTCAGC CGGGGGATCATTAACTAGAGGCCGTGACATGGCGGAGAAAGAGGGTGGCCAGCCTGTGTC ATGCTGCTCCGGACCCAAGGTGGCAGCTCTCACTGTGGGGACCGTGCTGCTCCTGACAGG CATTGGGGCAGCGTCCTGGGCCATTGTGACCGTTCTACTCAGGAGTGATCAGGAGCCGCT GTATCCAGTGCAGGTCGGCCCCGGGGATTCTCGGCTCACCGTGTTTGATGAGACGGAGGG CACGTGGCGCCTGCTGTGCTCCTCGCGCTCCAACGCCAGGGTGGCAGGGCTCAGCTGCGA GGAGATGGGCTTCCTCAGGTCACTGACCCACTCAGAGCTGGATGTGCGGACTGCGGGCGC CAACGGCACGTCGGGCTTCTTCTGTGTGGATGAGGGGAGGCTGCCGCAGGCCCGGAGGCT GCTTGAGGTCCTCTCCGTGTGCGACTGTCCCAGGGGCCATTTCCTGGCAACCACATGCCA AGACTGCGGCCATAGGAAGCTGCCCGTGGATCGCATTGTGGGCGGTCAGGACACCAGCCT GGGCCGGTGGCCGTGGCAAGTCAGTCTTCGCTACGACGGAGCACACCTCTGTGGGGGATC CCTGCTCTCCAAAGACTGGGTGCTGACAGCCGCCCACTGCTTCCCCGAGCGGAACCGGGT CCTGTCTCGATGGCGAGTATTCGCCGGTGCTGTGGCCCAGACCTCACCCCACGGCCTGCA GATGGGGGTGCAGGCGGTGATCTACCATGGGGACTATCTCCCCTTTCGAGACCCCAACAG CGAGGAGAACAGCAATGATATCGCCCTGGTCCACCTCTCCAGCTCCCTGGTCCTCACAGA ATACATCCAGCCCGTGTGCCTCCCGGCTGCCGGCCAAGCCCTGGTGGACGGCAAGATCTG CACGGTGACAGGCTGGGGCAACACGCAGTACTACGGCCAACAGGCTGGGGTGCTCCAGGA GGCCCGAGTCCCCATAATCAGCAATGATGTCTGCAATGGCCCCGACTTCTACGGAAACCA GATCAAGCCCAAGATGTTCTGTGCCGGCTACCCTGAGGGTGGCATTGACGCCTGCCAGGG TGACAGTGGTGGCCCCTTCGTGTGTGAGGACAGCATCTCTCGGACGCCACGCTGGCGGCT GTGTGGCATCGTGAGCTGGGGCACCGGCTGTGCCCTGGCCCAAAAGCCAGGCGTCTACAC CAAAGTCAGTGACTTCCGGGAGTGGATCTTCCAGGCCATAAAGACTCACTCCGAAGCCAG CGGCATGGTGACCCAGCTCTGACCTGCGGCTTCTGCTCGCTGCGCTCGCCTCCAGGGCCC AAGCTGATCCAGGTGGCTCCAGCCCCTCATGATGGGGTTCACCCTGGGCCTGGGATAGAA CATTTTTCTTCTTGGGCCCAGCCCACAGGTCCAAGGATACCCTCCCTCCAAGGTCCTCTC TTCCACAGTGGCGGGCCCACTCAGCCCTGGCATCACCCGAGCCTCACCCTCCTGACCCCC ATGTAAATATTGTTCTGCCATCTGGGGGCCCCTATCTAGTGCCCCTGATGACAGGATGCT CTTTAAATAATAAAGATGGTTTTGATTAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1493-1691, - strand, RNAz p=0.989157 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1493-1691, - strand, RNAz p=0.989157 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 32-156, gnl|bosTau2|chr18 (39991040-39990918) | |
| 32-156, gnl|canFam2|chr1 (120411117-120410831) | |
| 32-156, gnl|dasNov1|scaffold_53952 (2410-2717) | |
| 32-156, gnl|hg17|chr19 (40224434-40224739) | |
| 32-156, gnl|Hg17|chr19 (40224496-40224618) | |
| 32-156, gnl|mm7|chr7 (28056561-28056304) | |
| 32-156, gnl|Mm7|chr7 (28056486-28056376) | |
| 32-156, gnl|monDom2|scaffold_139 (1362950-1363261) | |
| 32-156, gnl|rheMac2|chr19 (41532474-41532779) | |
| 32-156, gnl|rn3|chr1 (86239252-86238999) | |
| 197-326, gnl|bosTau2|chr18 (39983836-39983707) | |
| 197-326, gnl|Hg17|chr19 (40232006-40232135) | |
| 197-326, gnl|Mm7|chr7 (28050754-28050625) | |
| 366-500, gnl|bosTau2|chr18 (39977605-39977471) | |
| 366-500, gnl|canFam2|chr1 (120400100-120399949) | |
| 366-500, gnl|danRer3|chr16 (48409141-48409282) | |
| 366-500, gnl|echTel1|scaffold_307534 (12089-11935) | |
| 366-500, gnl|fr1|chrUn (226152080-226151929) | |
| 366-500, gnl|hg17|chr19 (40242395-40242550) | |
| 366-500, gnl|Hg17|chr19 (40242414-40242548) | |
| 366-500, gnl|loxAfr1|scaffold_33082 (15725-15577) | |
| 366-500, gnl|mm7|chr7 (28043769-28043616) | |
| 366-500, gnl|Mm7|chr7 (28043750-28043616) | |
| 366-500, gnl|monDom2|scaffold_139 (1371557-1371712) | |
| 366-500, gnl|oryCun1|scaffold_192257 (591-744) | |
| 366-500, gnl|panTro1|chr20 (36828463-36828618) | |
| 366-500, gnl|rheMac2|chr19 (41550683-41550838) | |
| 366-500, gnl|rn3|chr1 (86228808-86228655) | |
| 366-500, gnl|tetNig1|chr8 (3067058-3067194) | |
| 366-500, gnl|xenTro1|scaffold_761 (79977-79842) | |
| 807-1046, gnl|bosTau2|chr18 (39976478-39976237) | |
| 807-1046, gnl|Hg17|chr19 (40243346-40243600) | |
| 807-1046, gnl|Mm7|chr7 (28042805-28042452) | |
| 1115-1259, gnl|bosTau2|chr18 (39972112-39971968) | |
| 1115-1259, gnl|Hg17|chr19 (40248282-40248426) | |
| 1115-1259, gnl|Mm7|chr7 (28039662-28039518) | |
| 1422-1769, gnl|bosTau2|chr18 (39971427-39971089) | |
| 1422-1769, gnl|Hg17|chr19 (40248991-40249317) | |
| 1422-1769, gnl|Mm7|chr7 (28039088-28038742) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 32-156, gnl|bosTau2|chr18 (39991040-39990918) | |
| 32-156, gnl|canFam2|chr1 (120411117-120410831) | |
| 32-156, gnl|dasNov1|scaffold_53952 (2410-2717) | |
| 32-156, gnl|hg17|chr19 (40224434-40224739) | |
| 32-156, gnl|Hg17|chr19 (40224496-40224618) | |
| 32-156, gnl|mm7|chr7 (28056561-28056304) | |
| 32-156, gnl|Mm7|chr7 (28056486-28056376) | |
| 32-156, gnl|monDom2|scaffold_139 (1362950-1363261) | |
| 32-156, gnl|rheMac2|chr19 (41532474-41532779) | |
| 32-156, gnl|rn3|chr1 (86239252-86238999) | |
| 197-326, gnl|bosTau2|chr18 (39983836-39983707) | |
| 197-326, gnl|Hg17|chr19 (40232006-40232135) | |
| 197-326, gnl|Mm7|chr7 (28050754-28050625) | |
| 366-500, gnl|bosTau2|chr18 (39977605-39977471) | |
| 366-500, gnl|canFam2|chr1 (120400100-120399949) | |
| 366-500, gnl|danRer3|chr16 (48409141-48409282) | |
| 366-500, gnl|echTel1|scaffold_307534 (12089-11935) | |
| 366-500, gnl|fr1|chrUn (226152080-226151929) | |
| 366-500, gnl|hg17|chr19 (40242395-40242550) | |
| 366-500, gnl|Hg17|chr19 (40242414-40242548) | |
| 366-500, gnl|loxAfr1|scaffold_33082 (15725-15577) | |
| 366-500, gnl|mm7|chr7 (28043769-28043616) | |
| 366-500, gnl|Mm7|chr7 (28043750-28043616) | |
| 366-500, gnl|monDom2|scaffold_139 (1371557-1371712) | |
| 366-500, gnl|oryCun1|scaffold_192257 (591-744) | |
| 366-500, gnl|panTro1|chr20 (36828463-36828618) | |
| 366-500, gnl|rheMac2|chr19 (41550683-41550838) | |
| 366-500, gnl|rn3|chr1 (86228808-86228655) | |
| 366-500, gnl|tetNig1|chr8 (3067058-3067194) | |
| 366-500, gnl|xenTro1|scaffold_761 (79977-79842) | |
| 807-1046, gnl|bosTau2|chr18 (39976478-39976237) | |
| 807-1046, gnl|Hg17|chr19 (40243346-40243600) | |
| 807-1046, gnl|Mm7|chr7 (28042805-28042452) | |
| 1115-1259, gnl|bosTau2|chr18 (39972112-39971968) | |
| 1115-1259, gnl|Hg17|chr19 (40248282-40248426) | |
| 1115-1259, gnl|Mm7|chr7 (28039662-28039518) | |
| 1422-1769, gnl|bosTau2|chr18 (39971427-39971089) | |
| 1422-1769, gnl|Hg17|chr19 (40248991-40249317) | |
| 1422-1769, gnl|Mm7|chr7 (28039088-28038742) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| fli (0.405762) | |
| cli (0.305623) | |
| nlu (0.191681) | |
| ute (0.132784) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.405762) | |
| cli (0.305623) | |
| nlu (0.191681) | |
| ute (0.132784) | |
| eje (0.0988338) |