Ss1.1-Liv1-LVR010051A09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACTGTCAGATAAAGCGGCGGGCCGGGCCGGCGGGGCGGTGAGCACGGCCCGGGCCGGA CATGGCGGCGCTCTACGCCTGCACCAAGTGCCACCAGCGCTTCCCCTTCGAGGCGCTGTC TCAGGGGCAGCAGCTGTGCAAGGAATGTCGGATTGCACACCCTGTTGTGAAGTGCACCTA CTGTAGGACTGAGTACCAGCAGGAGAGTAAAACCAATACTATATGCAAGAAATGTGCTCA GAATGTGCAGTTGTATGGAACGCCCAAACCTTGTCAGTATTGCAACATAATTGCAGCATT TATTGGCAACAAATGCCAGCGTTGCACAAATTCAGAGAAGAAGTATGGACCACCATATTC TTGTGAACAGTGCAAACAGCAGTGTGCATTTGACAGGAAAGATGATAGAAAGAAGGTAGA TGGGAAATTGCTGTGCTGGCTGTGTACACTTTCATATAAACGGGTCCTTCAGAAGACCAA AGAGCAGAGGAAGCACCTGAGCAGCTCTTCCCGTACAAGCCACCAGGAGAAGGAGCAGTA CAGTCGACTGAGTGGTGGCCATTATAACAGGTAACCCCAAGATGCATAAGACTTAGAGGT GCTAGGAGGTCAGATGTCATACAGAATGTAATGCAGAGTTAGCCATGGAATACCATTTCA GCTAAATTTTCCTATTTTCTCTCTAGATACTATAGAGGGACTCTCCTTTGTTGTGTTTAT GTTCATGTATCATTCAAGGGCCAGAGAGACATCTGTAAGGATTTTCAGACTGGTTTTTGT TGTGTCTTAAAAGTTTGTGGAGGAGTTCCTGTCATGGCTCAGTGGTTAACAAACCCAACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACTGTCAGATAAAGCGGCGGGCCGGGCCGGCGGGGCGGTGAGCACGGCCCGGGCCGGA CATGGCGGCGCTCTACGCCTGCACCAAGTGCCACCAGCGCTTCCCCTTCGAGGCGCTGTC TCAGGGGCAGCAGCTGTGCAAGGAATGTCGGATTGCACACCCTGTTGTGAAGTGCACCTA CTGTAGGACTGAGTACCAGCAGGAGAGTAAAACCAATACTATATGCAAGAAATGTGCTCA GAATGTGCAGTTGTATGGAACGCCCAAACCTTGTCAGTATTGCAACATAATTGCAGCATT TATTGGCAACAAATGCCAGCGTTGCACAAATTCAGAGAAGAAGTATGGACCACCATATTC TTGTGAACAGTGCAAACAGCAGTGTGCATTTGACAGGAAAGATGATAGAAAGAAGGTAGA TGGGAAATTGCTGTGCTGGCTGTGTACACTTTCATATAAACGGGTCCTTCAGAAGACCAA AGAGCAGAGGAAGCACCTGAGCAGCTCTTCCCGTACAAGCCACCAGGAGAAGGAGCAGTA CAGTCGACTGAGTGGTGGCCATTATAACAGGTAACCCCAAGATGCATAAGACTTAGAGGT GCTAGGAGGTCAGATGTCATACAGAATGTAATGCAGAGTTAGCCATGGAATACCATTTCA GCTAAATTTTCCTATTTTCTCTCTAGATACTATAGAGGGACTCTCCTTTGTTGTGTTTAT GTTCATGTATCATTCAAGGGCCAGAGAGACATCTGTAAGGATTTTCAGACTGGTTTTTGT TGTGTCTTAAAAGTTTGTGGAGGAGTTCCTGTCATGGCTCAGTGGTTAACAAACCCAACT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 259-418, + strand, RNAz p=0.98705 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 259-418, + strand, RNAz p=0.98705 |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 1-143, gnl|bosTau2|chr2 (76172794-76172652) | |
| 1-143, gnl|canFam2|chr2 (75507357-75507459) | |
| 1-143, gnl|dasNov1|scaffold_46538 (2165-2065) | |
| 1-143, gnl|echTel1|scaffold_180686 (2685-2786) | |
| 1-143, gnl|Hg17|chr1 (27736673-27736815) | |
| 1-143, gnl|hg17|chr3 (134747733-134747835) | |
| 1-143, gnl|loxAfr1|scaffold_26891 (38779-38677) | |
| 1-143, gnl|mm7|chr18 (9699455-9699353) | |
| 1-143, gnl|Mm7|chr4 (132300934-132300790) | |
| 1-143, gnl|oryCun1|scaffold_204670 (3681-3586) | |
| 1-143, gnl|panTro1|chr2 (136888674-136888776) | |
| 1-143, gnl|rheMac2|chr14 (94347261-94347363) | |
| 1-143, gnl|rn3|chr5 (152228298-152228196) | |
| 1-143, gnl|tetNig1|chrUn_random (103569457-103569376) | |
| 259-418, gnl|bosTau2|chr2 (76167319-76167160) | |
| 259-418, gnl|canFam2|chr2 (75501746-75501579) | |
| 259-418, gnl|danRer3|chr5 (15512038-15512207) | |
| 259-418, gnl|dasNov1|scaffold_46538 (2282-2430) | |
| 259-418, gnl|echTel1|scaffold_49885 (722-887) | |
| 259-418, gnl|fr1|chrUn (49730362-49730193) | |
| 259-418, gnl|galGal2|chrUn (147041176-147041343) | |
| 259-418, gnl|hg17|chr1 (27744666-27744835) | |
| 259-418, gnl|Hg17|chr1 (27744680-27744839) | |
| 259-418, gnl|loxAfr1|scaffold_6554 (5104-5279) | |
| 259-418, gnl|mm7|chr4 (132294722-132294555) | |
| 259-418, gnl|Mm7|chr4 (132294708-132294549) | |
| 259-418, gnl|monDom2|scaffold_147 (195678-195848) | |
| 259-418, gnl|oryCun1|scaffold_204670 (7890-8060) | |
| 259-418, gnl|panTro1|chr1_random (57391804-57391973) | |
| 259-418, gnl|rheMac2|chr1 (30426749-30426918) | |
| 259-418, gnl|rn3|chr5 (152233659-152233826) | |
| 259-418, gnl|tetNig1|chrUn_random (103570197-103570349) | |
| 259-418, gnl|xenTro1|scaffold_123 (2161315-2161147) | |
| 262-415, gnl|bosTau2|chr15 (3666911-3667063) | |
| 262-415, gnl|canFam2|chr21 (8364058-8363890) | |
| 262-415, gnl|danRer3|chr5 (15512214-15512049) | |
| 262-415, gnl|dasNov1|scaffold_46538 (2438-2283) | |
| 262-415, gnl|echTel1|scaffold_284834 (187533-187362) | |
| 262-415, gnl|fr1|chrUn (49730186-49730351) | |
| 262-415, gnl|galGal2|chr1 (177058918-177058743) | |
| 262-415, gnl|hg17|chr11 (95158920-95159095) | |
| 262-415, gnl|Hg17|chr11 (95159087-95158935) | |
| 262-415, gnl|loxAfr1|scaffold_6554 (5294-5121) | |
| 262-415, gnl|mm7|chr9 (13668324-13668149) | |
| 262-415, gnl|Mm7|chr9 (13668155-13668307) | |
| 262-415, gnl|monDom2|scaffold_15 (1445258-1445082) | |
| 262-415, gnl|oryCun1|scaffold_130564 (6685-6856) | |
| 262-415, gnl|panTro1|chr9 (97071336-97071511) | |
| 262-415, gnl|rheMac2|chr14 (94343955-94344130) | |
| 262-415, gnl|rn3|chr8 (10631815-10631640) | |
| 262-415, gnl|tetNig1|chr7 (5228262-5228427) | |
| 262-415, gnl|xenTro1|scaffold_123 (2161137-2161304) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-143, gnl|bosTau2|chr2 (76172794-76172652) | |
| 1-143, gnl|canFam2|chr2 (75507357-75507459) | |
| 1-143, gnl|dasNov1|scaffold_46538 (2165-2065) | |
| 1-143, gnl|echTel1|scaffold_180686 (2685-2786) | |
| 1-143, gnl|Hg17|chr1 (27736673-27736815) | |
| 1-143, gnl|hg17|chr3 (134747733-134747835) | |
| 1-143, gnl|loxAfr1|scaffold_26891 (38779-38677) | |
| 1-143, gnl|mm7|chr18 (9699455-9699353) | |
| 1-143, gnl|Mm7|chr4 (132300934-132300790) | |
| 1-143, gnl|oryCun1|scaffold_204670 (3681-3586) | |
| 1-143, gnl|panTro1|chr2 (136888674-136888776) | |
| 1-143, gnl|rheMac2|chr14 (94347261-94347363) | |
| 1-143, gnl|rn3|chr5 (152228298-152228196) | |
| 1-143, gnl|tetNig1|chrUn_random (103569457-103569376) | |
| 259-418, gnl|bosTau2|chr2 (76167319-76167160) | |
| 259-418, gnl|canFam2|chr2 (75501746-75501579) | |
| 259-418, gnl|danRer3|chr5 (15512038-15512207) | |
| 259-418, gnl|dasNov1|scaffold_46538 (2282-2430) | |
| 259-418, gnl|echTel1|scaffold_49885 (722-887) | |
| 259-418, gnl|fr1|chrUn (49730362-49730193) | |
| 259-418, gnl|galGal2|chrUn (147041176-147041343) | |
| 259-418, gnl|hg17|chr1 (27744666-27744835) | |
| 259-418, gnl|Hg17|chr1 (27744680-27744839) | |
| 259-418, gnl|loxAfr1|scaffold_6554 (5104-5279) | |
| 259-418, gnl|mm7|chr4 (132294722-132294555) | |
| 259-418, gnl|Mm7|chr4 (132294708-132294549) | |
| 259-418, gnl|monDom2|scaffold_147 (195678-195848) | |
| 259-418, gnl|oryCun1|scaffold_204670 (7890-8060) | |
| 259-418, gnl|panTro1|chr1_random (57391804-57391973) | |
| 259-418, gnl|rheMac2|chr1 (30426749-30426918) | |
| 259-418, gnl|rn3|chr5 (152233659-152233826) | |
| 259-418, gnl|tetNig1|chrUn_random (103570197-103570349) | |
| 259-418, gnl|xenTro1|scaffold_123 (2161315-2161147) | |
| 262-415, gnl|bosTau2|chr15 (3666911-3667063) | |
| 262-415, gnl|canFam2|chr21 (8364058-8363890) | |
| 262-415, gnl|danRer3|chr5 (15512214-15512049) | |
| 262-415, gnl|dasNov1|scaffold_46538 (2438-2283) | |
| 262-415, gnl|echTel1|scaffold_284834 (187533-187362) | |
| 262-415, gnl|fr1|chrUn (49730186-49730351) | |
| 262-415, gnl|galGal2|chr1 (177058918-177058743) | |
| 262-415, gnl|hg17|chr11 (95158920-95159095) | |
| 262-415, gnl|Hg17|chr11 (95159087-95158935) | |
| 262-415, gnl|loxAfr1|scaffold_6554 (5294-5121) | |
| 262-415, gnl|mm7|chr9 (13668324-13668149) | |
| 262-415, gnl|Mm7|chr9 (13668155-13668307) | |
| 262-415, gnl|monDom2|scaffold_15 (1445258-1445082) | |
| 262-415, gnl|oryCun1|scaffold_130564 (6685-6856) | |
| 262-415, gnl|panTro1|chr9 (97071336-97071511) | |
| 262-415, gnl|rheMac2|chr14 (94343955-94344130) | |
| 262-415, gnl|rn3|chr8 (10631815-10631640) | |
| 262-415, gnl|tetNig1|chr7 (5228262-5228427) | |
| 262-415, gnl|xenTro1|scaffold_123 (2161137-2161304) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.174948) | |
| nje (0.16592) |