Non-Coding RNA Search

Ss1.1-Liv1-LVR010051A11.5

Sequence:


               
               ACGGCAGTCTCTCTACCGCTGCGATCTCGCCCTAGAGCCCAGGAGTCCGCCTCCTCTGTC
CGCTTCGGTTTATCTCTCACCCCGACGCAAGAATCATGAAGGTCGCCAGTGGCAGCGCCA
CGGCCACCGCGGGCCCCAGCTGCGCGCTGAAGGCCGGCAAGACGGCGGGCGGCGCGGGCG
AGGTGGTGCGCTGCCTCTCCGAGCAGAGCGTGGCCATCTCGCGCTGTGCGGGTGGCCCCG
GGGCACGCCTGCCTCCCCTACTCGACGAACAGCAGGTGAACGTGCTCCTCTACGACATGA
ACGGCTGCTATTCTCGCCTCAAGGAGCTGGTGCCCACTCTGCCCCAGAACCGCAAGGTGA
GCAGGGTGGAGATCCTCCAGCATGTCATCGACTACATCTGGGACCTGGAGTTGGAGCTGA
ACTCGGAATCCCAAGTTGGGACCCAAGGCGGCCGGGGACTCCCCGCCCGGGCTCCGCTCA
GCACCCTCAACGGCGAAATCAGCGCCCTGGCGGCAGAGACAGCATGTGTTCCAGCGGACG
ATCGCATCTTGTGTCGCTGAAGCGCCGCCCTTGGGGACCTGCGGACCCCAGCCCTCCAGG
GGGCGAGAGAAATCAGTGTTCTCTGGTCCTTCCAAGCACCTCGCCATAGCTGGGGAGAAC
AAGACAGATCGGCGGCTGTTGGGCGCTTGCTAGATCCAGCCCAGGGCTGGGGGTACTGAT
GAGGGCAGGCTGACCCTCCCTTCTCACTCACCAGCCACCAGAGACTTGGGGGAGTTCCCC
CCATGTGTTTCTATTTTTTGAAAAGCAGACATTTTAAAAAATGGTCACGTTTGGTGCTTC
TCAGATTTCTGAGGAAATTAATTGCTTTGTATTGTATATTACAATGATCACCGACTGAGA
ATATTGTTTTACAATAGTTCTGTGGGGTGTTTTGTTTTATTTTTTTGGTTGTTGTTGTTA
TTATTAAACAAATGCCTTAGATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGCAGTCTCTCTACCGCTGCGATCTCGCCCTAGAGCCCAGGAGTCCGCCTCCTCTGTC
CGCTTCGGTTTATCTCTCACCCCGACGCAAGAATCATGAAGGTCGCCAGTGGCAGCGCCA
CGGCCACCGCGGGCCCCAGCTGCGCGCTGAAGGCCGGCAAGACGGCGGGCGGCGCGGGCG
AGGTGGTGCGCTGCCTCTCCGAGCAGAGCGTGGCCATCTCGCGCTGTGCGGGTGGCCCCG
GGGCACGCCTGCCTCCCCTACTCGACGAACAGCAGGTGAACGTGCTCCTCTACGACATGA
ACGGCTGCTATTCTCGCCTCAAGGAGCTGGTGCCCACTCTGCCCCAGAACCGCAAGGTGA
GCAGGGTGGAGATCCTCCAGCATGTCATCGACTACATCTGGGACCTGGAGTTGGAGCTGA
ACTCGGAATCCCAAGTTGGGACCCAAGGCGGCCGGGGACTCCCCGCCCGGGCTCCGCTCA
GCACCCTCAACGGCGAAATCAGCGCCCTGGCGGCAGAGACAGCATGTGTTCCAGCGGACG
ATCGCATCTTGTGTCGCTGAAGCGCCGCCCTTGGGGACCTGCGGACCCCAGCCCTCCAGG
GGGCGAGAGAAATCAGTGTTCTCTGGTCCTTCCAAGCACCTCGCCATAGCTGGGGAGAAC
AAGACAGATCGGCGGCTGTTGGGCGCTTGCTAGATCCAGCCCAGGGCTGGGGGTACTGAT
GAGGGCAGGCTGACCCTCCCTTCTCACTCACCAGCCACCAGAGACTTGGGGGAGTTCCCC
CCATGTGTTTCTATTTTTTGAAAAGCAGACATTTTAAAAAATGGTCACGTTTGGTGCTTC
TCAGATTTCTGAGGAAATTAATTGCTTTGTATTGTATATTACAATGATCACCGACTGAGA
ATATTGTTTTACAATAGTTCTGTGGGGTGTTTTGTTTTATTTTTTTGGTTGTTGTTGTTA
TTATTAAACAAATGCCTTAGATGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56387493|gb|AAV86136.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56387493|gb|AAV86136.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               325-444, - strand, RNAz p=0.532195

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               325-444, - strand, RNAz p=0.532195

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               50-518, gnl|bosTau2|chr13 (43333795-43334256)
               

               
               50-518, gnl|Hg17|chr20 (29656812-29657277)
               

               
               50-518, gnl|Mm7|chr2 (152477164-152477602)
               


               
               285-509, gnl|bosTau2|chr11 (69161011-69161247)
               

               
               285-509, gnl|Hg17|chr2 (8772996-8773232)
               

               
               285-509, gnl|Mm7|chr12 (22932410-22932174)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-518, gnl|bosTau2|chr13 (43333795-43334256)
               

               
               50-518, gnl|Hg17|chr20 (29656812-29657277)
               

               
               50-518, gnl|Mm7|chr2 (152477164-152477602)
               


               
               285-509, gnl|bosTau2|chr11 (69161011-69161247)
               

               
               285-509, gnl|Hg17|chr2 (8772996-8773232)
               

               
               285-509, gnl|Mm7|chr12 (22932410-22932174)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               pla (0.935704)
               

               
               nlu (0.766724)
               

               
               eje (0.691836)
               

               
               amn (0.417711)
               

               
               nca (0.410621)
               

               
               col (0.390016)
               

               
               eye (0.341006)
               

               
               cut (0.339847)
               

               
               cki (0.330469)
               

               
               che (0.272628)
               

               
               ssp (0.271039)
               

               
               ese (0.253004)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.935704)
               

               
               nlu (0.766724)
               

               
               eje (0.691836)
               

               
               amn (0.417711)
               

               
               nca (0.410621)
               

               
               col (0.390016)
               

               
               eye (0.341006)
               

               
               cut (0.339847)
               

               
               cki (0.330469)
               

               
               che (0.272628)
               

               
               ssp (0.271039)
               

               
               ese (0.253004)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	50-518, gnl\|bosTau2\|chr13 (43333795-43334256)
	50-518, gnl\|Hg17\|chr20 (29656812-29657277)
	50-518, gnl\|Mm7\|chr2 (152477164-152477602)

	285-509, gnl\|bosTau2\|chr11 (69161011-69161247)
	285-509, gnl\|Hg17\|chr2 (8772996-8773232)
	285-509, gnl\|Mm7\|chr12 (22932410-22932174)

	pla (0.935704)
	nlu (0.766724)
	eje (0.691836)
	amn (0.417711)
	nca (0.410621)
	col (0.390016)
	eye (0.341006)
	cut (0.339847)
	cki (0.330469)
	che (0.272628)
	ssp (0.271039)
	ese (0.253004)
	mas (0.210305)
	hea (0.204499)
	fli (0.202881)
	nep (0.183925)
	sto (0.179824)
	ton (0.1755)
	fbs (0.175346)
	nje (0.16592)
	lnt (0.142308)
	csk (0.140746)
	hlv (0.139256)
	ute (0.132784)
	eep (0.122564)
	pgl (0.118483)
	ebs (0.118301)
	cty (0.10408)
	nbm (0.0993246)
	jej (0.0989218)