Non-Coding RNA Search

Ss1.1-Liv1-LVR010051D11.5

Sequence:


               
               GAGACTAGGACTTTTTTCTCCTACAGACTTGTGCTCCCCTTGCAGAGGTGGCCCCACAGT
TCTAAATCAGAGTGAGTCAAAAGAAGAGCCCCCAGGGCTGAAAACTAAAGCTGGCATGCA
GCATGGGGACAAGAAATATTTTTTGATGGCTGAATGAATGAATGAGCCAGGATCGACTTG
GAAACACATCGGGGCTCCCTCTTGCTATTCACAGACCTCTGGGGCTATCTAAGCCCAAAG
AGGACACCCCTAGGCTTCGGCTCACCCCAGGGGCATACCCGCGCTCATAAACACGCATGT
CCATACACACACACAAACACACACCCCGAGGGAAACTTCCAGGCCAGAGGCAGAGCCATG
ATGCAGACTCAAGCTCCAGGTCAACACTCCAGCCTCCAGGGAAGGGGGCAGCAGGAGGCA
CCGAGCCCCCCCGCCTGCTGGCAGGGCTCACTCTCGGAAGCTGTCGGCCAGCTGGTGGCA
ATCCAGCTCCCCCTTCGGCTCCAGGCCCCCCGGAAGCTTCACTCCCGTCTTCCGGTCCAC
ACACCAGCACTTGCCGCGCTGACCATCCAGGGCCGGGTGGCACTGCTTGGGGTGGAAGTT
GCCGTTGCGGTCGCAGTTGGGGATGGGGATGATGTAGAGGTCCTCATGGGTGCGTCTCTG
CGAGGCGGCCAGCCGCTCCAGGGCCCGGTGCAGCTCACTCTGGCAGGAGCCCTGGGGCAC
AGGCCGGGCTTCCTCCCGAGGCGCCCCGATGACCTTCATCTTGCCCCCACTGGTGCTCCG
GTCTCGGATCTTGGCCAAGTGCTTCTGCAGGCACCTGCGGTCTTGGGGGCTGCAGGGGCT
GAAGCTGTTGTTGGGGTGGTCACCCTCGTCCTTGTCAGAGGGCTGCAGGCTTTCCTGGAT
GGCCTCGATCTCTGCCAGCTCCATGCACAGGCCTTGCCCGTGCATCAGCGTGTGCAGGGG
CTTCTCCACGCCCCGGGGCGGGTAGCACCGCAGGCCAGAGCCACAGCGGGGTGTATACAC
CCCGCAGGGCATCCCTTTGCCCAGGGCGCAAGTGGCGCAACAGCCGCAGCCCGGCTCTCG
CACCAGCTCCTCGCAGCCCACGGGGGGGCGGCAGCGCGCCAGCTTCTCTTCGGAGCAGGG
CGGGCAGTGGATGGCTTCGTCGCCCAGGCTCGGCCGGGGCCCGGAGGCCAACAGCAGCAG
CGCGGCCACGAGGCACAGGGGCAGCATGACCGGGCGAGGACGGGACGCCGGCTGGCAGCA
GGGGTCGCACGGCGACAGAGCCCGGCGCGCCTGGAGGGACCCGACCCGGAGGGCGCGGGG
ACACGGGGCTGGCCCGGCTGGCGGACAAGGATGGAGCCGAGGAAGTTAGCAAGCGGGCCG
GAAGGGAGCGAGCCTGGCCGCGGGGGCGCTGCGCCGCATCCTCGGCCCGGCCCAGGCGGC
GGGCGGTGGGGGGTGCAGGGGGCTGAGCGGCTGCCTGGGACCAGCTCCCCCGGACTTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGACTAGGACTTTTTTCTCCTACAGACTTGTGCTCCCCTTGCAGAGGTGGCCCCACAGT
TCTAAATCAGAGTGAGTCAAAAGAAGAGCCCCCAGGGCTGAAAACTAAAGCTGGCATGCA
GCATGGGGACAAGAAATATTTTTTGATGGCTGAATGAATGAATGAGCCAGGATCGACTTG
GAAACACATCGGGGCTCCCTCTTGCTATTCACAGACCTCTGGGGCTATCTAAGCCCAAAG
AGGACACCCCTAGGCTTCGGCTCACCCCAGGGGCATACCCGCGCTCATAAACACGCATGT
CCATACACACACACAAACACACACCCCGAGGGAAACTTCCAGGCCAGAGGCAGAGCCATG
ATGCAGACTCAAGCTCCAGGTCAACACTCCAGCCTCCAGGGAAGGGGGCAGCAGGAGGCA
CCGAGCCCCCCCGCCTGCTGGCAGGGCTCACTCTCGGAAGCTGTCGGCCAGCTGGTGGCA
ATCCAGCTCCCCCTTCGGCTCCAGGCCCCCCGGAAGCTTCACTCCCGTCTTCCGGTCCAC
ACACCAGCACTTGCCGCGCTGACCATCCAGGGCCGGGTGGCACTGCTTGGGGTGGAAGTT
GCCGTTGCGGTCGCAGTTGGGGATGGGGATGATGTAGAGGTCCTCATGGGTGCGTCTCTG
CGAGGCGGCCAGCCGCTCCAGGGCCCGGTGCAGCTCACTCTGGCAGGAGCCCTGGGGCAC
AGGCCGGGCTTCCTCCCGAGGCGCCCCGATGACCTTCATCTTGCCCCCACTGGTGCTCCG
GTCTCGGATCTTGGCCAAGTGCTTCTGCAGGCACCTGCGGTCTTGGGGGCTGCAGGGGCT
GAAGCTGTTGTTGGGGTGGTCACCCTCGTCCTTGTCAGAGGGCTGCAGGCTTTCCTGGAT
GGCCTCGATCTCTGCCAGCTCCATGCACAGGCCTTGCCCGTGCATCAGCGTGTGCAGGGG
CTTCTCCACGCCCCGGGGCGGGTAGCACCGCAGGCCAGAGCCACAGCGGGGTGTATACAC
CCCGCAGGGCATCCCTTTGCCCAGGGCGCAAGTGGCGCAACAGCCGCAGCCCGGCTCTCG
CACCAGCTCCTCGCAGCCCACGGGGGGGCGGCAGCGCGCCAGCTTCTCTTCGGAGCAGGG
CGGGCAGTGGATGGCTTCGTCGCCCAGGCTCGGCCGGGGCCCGGAGGCCAACAGCAGCAG
CGCGGCCACGAGGCACAGGGGCAGCATGACCGGGCGAGGACGGGACGCCGGCTGGCAGCA
GGGGTCGCACGGCGACAGAGCCCGGCGCGCCTGGAGGGACCCGACCCGGAGGGCGCGGGG
ACACGGGGCTGGCCCGGCTGGCGGACAAGGATGGAGCCGAGGAAGTTAGCAAGCGGGCCG
GAAGGGAGCGAGCCTGGCCGCGGGGGCGCTGCGCCGCATCCTCGGCCCGGCCCAGGCGGC
GGGCGGTGGGGGGTGCAGGGGGCTGAGCGGCTGCCTGGGACCAGCTCCCCCGGACTTTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|944952|gb|AAB33382.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|944952|gb|AAB33382.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               212-552, - strand, RNAz p=0.977605
               

               
               870-1108, - strand, RNAz p=0.819641

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               212-552, - strand, RNAz p=0.977605
               

               
               870-1108, - strand, RNAz p=0.819641

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of NM_001552, -
               

               
               5' of NM_001552, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001552, -
               

               
               5' of NM_001552, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-586, gnl|bosTau2|chr19 (34218413-34218990)
               

               
               4-586, gnl|Hg17|chr17 (35866846-35866223)
               

               
               4-586, gnl|Mm7|chr11 (99161076-99160480)
               


               
               870-1500, gnl|bosTau2|chr19 (34228777-34229402)
               

               
               870-1500, gnl|Hg17|chr17 (35853868-35853200)
               

               
               870-1500, gnl|Mm7|chr11 (99150890-99150256)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-586, gnl|bosTau2|chr19 (34218413-34218990)
               

               
               4-586, gnl|Hg17|chr17 (35866846-35866223)
               

               
               4-586, gnl|Mm7|chr11 (99161076-99160480)
               


               
               870-1500, gnl|bosTau2|chr19 (34228777-34229402)
               

               
               870-1500, gnl|Hg17|chr17 (35853868-35853200)
               

               
               870-1500, gnl|Mm7|chr11 (99150890-99150256)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pty (0.142714)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)
               

               
               ese (0.126502)

	212-552, - strand, RNAz p=0.977605
	870-1108, - strand, RNAz p=0.819641

	4-586, gnl\|bosTau2\|chr19 (34218413-34218990)
	4-586, gnl\|Hg17\|chr17 (35866846-35866223)
	4-586, gnl\|Mm7\|chr11 (99161076-99160480)

	870-1500, gnl\|bosTau2\|chr19 (34228777-34229402)
	870-1500, gnl\|Hg17\|chr17 (35853868-35853200)
	870-1500, gnl\|Mm7\|chr11 (99150890-99150256)