Non-Coding RNA Search

Ss1.1-Liv1-LVR010051F08.5

Sequence:


               
               GCGTAGTACAGGAAGAATGGGCGGCCCTGGCGCTGGGCATCAGCCATGAGGTCACGGGCG
AAGGCCACGTAGCGGGCCTCAAGTCCAGGCAGCCAAGGGGGCTGCGCCTCCACCGACAGG
TTGGCCAATAGCGGGACAGGGACTAGGCCCTGGTCACAGCTGCCGTCGCAGGGGGTGGAC
GGCGGGAAGCAGGTCAGGTTCTGGCAGGGGCCCTGGTCATGGGAGTATGGGATGCCCAGG
AATCGATGGAAGCCCTGGTGGGGGGGCAGAAAGGCCCCCTCAGGCCCCACCCCAAGGTGC
CACTTGCCAGCCATCCCTGTGAGGTAGCCTCGGGCAGCAAGGACCTCAGCCAGGGTCACC
TCCTCCAGGGGAAGACCCCCTCGGGAGCTGGGTTCCAGAACGCCAGGGTACAGGCCCATC
CGAACTGGGAGTCGGCCGGTCAGGAGGGCAGCCCGGGAGGGTGTGCACAGAGACACCGGC
ACATAGAAGTCGGTGAACCGCAGACCCCCTGCGGCCAGCTGGTCCAGATTGGGGGTGGTG
GAACTGGGGTGCCCGTAGGAGCCCAGGTCTCCGTAGCCCAGGTCATCAGCAAAGATCAGC
ACGATGTTAGGTGGGCTGGTAGCAGCCAGGCCTGAGGCCAAGGCCAGAGTGAGGGCCCAC
AGAGCCACCATGGCCCACAGCACAGACCGGCCTGCAGCAGGAGACCCCGCGGGGGCCCGA
GAGGCGGGACGAGGGCAGTTCGGGTCCGAGGAAGGCTGGTGCGGCGGAACAGCGACAGGC
GGACGAGGGCAGTTCGGGTCCGAGGAAGGCTGGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTAGTACAGGAAGAATGGGCGGCCCTGGCGCTGGGCATCAGCCATGAGGTCACGGGCG
AAGGCCACGTAGCGGGCCTCAAGTCCAGGCAGCCAAGGGGGCTGCGCCTCCACCGACAGG
TTGGCCAATAGCGGGACAGGGACTAGGCCCTGGTCACAGCTGCCGTCGCAGGGGGTGGAC
GGCGGGAAGCAGGTCAGGTTCTGGCAGGGGCCCTGGTCATGGGAGTATGGGATGCCCAGG
AATCGATGGAAGCCCTGGTGGGGGGGCAGAAAGGCCCCCTCAGGCCCCACCCCAAGGTGC
CACTTGCCAGCCATCCCTGTGAGGTAGCCTCGGGCAGCAAGGACCTCAGCCAGGGTCACC
TCCTCCAGGGGAAGACCCCCTCGGGAGCTGGGTTCCAGAACGCCAGGGTACAGGCCCATC
CGAACTGGGAGTCGGCCGGTCAGGAGGGCAGCCCGGGAGGGTGTGCACAGAGACACCGGC
ACATAGAAGTCGGTGAACCGCAGACCCCCTGCGGCCAGCTGGTCCAGATTGGGGGTGGTG
GAACTGGGGTGCCCGTAGGAGCCCAGGTCTCCGTAGCCCAGGTCATCAGCAAAGATCAGC
ACGATGTTAGGTGGGCTGGTAGCAGCCAGGCCTGAGGCCAAGGCCAGAGTGAGGGCCCAC
AGAGCCACCATGGCCCACAGCACAGACCGGCCTGCAGCAGGAGACCCCGCGGGGGCCCGA
GAGGCGGGACGAGGGCAGTTCGGGTCCGAGGAAGGCTGGTGCGGCGGAACAGCGACAGGC
GGACGAGGGCAGTTCGGGTCCGAGGAAGGCTGGTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55661593|ref|XP_515229.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55661593|ref|XP_515229.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               251-370, - strand, RNAz p=0.676583

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               251-370, - strand, RNAz p=0.676583

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               212-461, gnl|bosTau2|chr5 (75648454-75648205)
               

               
               212-461, gnl|canFam2|chr10 (19680197-19679934)
               

               
               212-461, gnl|danRer3|chr18 (6724114-6724385)
               

               
               212-461, gnl|dasNov1|scaffold_117578 (2002-2279)
               

               
               212-461, gnl|fr1|chrUn (257445871-257446126)
               

               
               212-461, gnl|galGal2|chrUn (6048737-6048466)
               

               
               212-461, gnl|hg17|chr22 (49355734-49356012)
               

               
               212-461, gnl|Hg17|chr22 (49355737-49355986)
               

               
               212-461, gnl|mm7|chr15 (89557996-89558281)
               

               
               212-461, gnl|Mm7|chr15 (89557999-89558248)
               

               
               212-461, gnl|monDom2|scaffold_119 (1198787-1199076)
               

               
               212-461, gnl|panTro1|chr23 (49847032-49847310)
               

               
               212-461, gnl|rheMac2|chr10 (94657328-94657606)
               

               
               212-461, gnl|rn3|chr7 (127826372-127826657)
               

               
               212-461, gnl|tetNig1|chr13 (4077813-4077543)
               

               
               212-461, gnl|xenTro1|scaffold_1053 (264515-264239)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               212-461, gnl|bosTau2|chr5 (75648454-75648205)
               

               
               212-461, gnl|canFam2|chr10 (19680197-19679934)
               

               
               212-461, gnl|danRer3|chr18 (6724114-6724385)
               

               
               212-461, gnl|dasNov1|scaffold_117578 (2002-2279)
               

               
               212-461, gnl|fr1|chrUn (257445871-257446126)
               

               
               212-461, gnl|galGal2|chrUn (6048737-6048466)
               

               
               212-461, gnl|hg17|chr22 (49355734-49356012)
               

               
               212-461, gnl|Hg17|chr22 (49355737-49355986)
               

               
               212-461, gnl|mm7|chr15 (89557996-89558281)
               

               
               212-461, gnl|Mm7|chr15 (89557999-89558248)
               

               
               212-461, gnl|monDom2|scaffold_119 (1198787-1199076)
               

               
               212-461, gnl|panTro1|chr23 (49847032-49847310)
               

               
               212-461, gnl|rheMac2|chr10 (94657328-94657606)
               

               
               212-461, gnl|rn3|chr7 (127826372-127826657)
               

               
               212-461, gnl|tetNig1|chr13 (4077813-4077543)
               

               
               212-461, gnl|xenTro1|scaffold_1053 (264515-264239)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	212-461, gnl\|bosTau2\|chr5 (75648454-75648205)
	212-461, gnl\|canFam2\|chr10 (19680197-19679934)
	212-461, gnl\|danRer3\|chr18 (6724114-6724385)
	212-461, gnl\|dasNov1\|scaffold_117578 (2002-2279)
	212-461, gnl\|fr1\|chrUn (257445871-257446126)
	212-461, gnl\|galGal2\|chrUn (6048737-6048466)
	212-461, gnl\|hg17\|chr22 (49355734-49356012)
	212-461, gnl\|Hg17\|chr22 (49355737-49355986)
	212-461, gnl\|mm7\|chr15 (89557996-89558281)
	212-461, gnl\|Mm7\|chr15 (89557999-89558248)
	212-461, gnl\|monDom2\|scaffold_119 (1198787-1199076)
	212-461, gnl\|panTro1\|chr23 (49847032-49847310)
	212-461, gnl\|rheMac2\|chr10 (94657328-94657606)
	212-461, gnl\|rn3\|chr7 (127826372-127826657)
	212-461, gnl\|tetNig1\|chr13 (4077813-4077543)
	212-461, gnl\|xenTro1\|scaffold_1053 (264515-264239)