Ss1.1-Liv1-LVR010051H01.5
|
GGGAGCTGCCGCCGCTGCCGTCGCCGCTTTCGCCTTCACCTCGGAGATCGAGAGCGGGGA
GCAGGCTCGCGAGCCGCCGCCGCCTCCGTCGCCGCCATGGGGAACCGAGTTGCGCGGGAA
GACTTCGAGTGGGTCTACACTGACCAGCCCCACGCCAGTCGGCGCCAGGAGATCCTGGCA
AAGTATCCCGAGATAAAATCTTTGATGAAACCTGATTCCAACTTGATATGGATTGTAATT
TTGATGGTTCTCAGTCAGTTAATTGCATTTTATTTAGTAAAGGACTTGGACTGGAAATGG
GTCATATTTTGGGCATATGCCTTTGGAAGCTGCATTAACCATTCCATGACTCTGGCTATT
CATGAAGTGTCCCACAATAGTGCCTTTGGCCACTGCAAACCTATGTGGAATCGTTGGTTT
GGAGTATTTGCTAATCTCCCTATTGGTGTTCCGTATTCCGTTTCCTTTAAGAGGTATCAC
ATGGATCATCATCGATACCTCGGAAGTGATGGCATCGACGTGGATATTCCAACTGATTTC
GAAGGCTGGTTCTTCTGCACCACTTTCAGAAAGTTTATGTGGGTTATTCTTCAGCCGCTC
TTTTACGCCTTTCGACCTCTGTTCATCAACCCCAAGCCAATTTCCTATCTGGAGATTATC
AATACTGTGATCCAGGTCACTTTTGACGTTGTGATTTACTACGTCTTGGGAATGAAATCT
TTAGTCTACATGCTGTCAGCATCCTTACTTGGTCTAGGTTTGCACCCAATTTCTGGACAT
TTTATAGCTGAACATTACATGTTCTTAAAAGGGCATGAAACTTACTCATATTACGGGCCT
CTGAACTTACTCACCTTCAACGTGGGCTACCACAACGAGCACCATGACTTCCCCAACATT
CCCGGGAAAAACCTTCCCCTGGTGAGGAAAATAGCAGCGGAGTACTATGACAACCTCCCC
CACTATAATTCCTGGATAAAAGTACTGTATGATTTTGTGACGGATGATACAATAAGTCCT
TATTCGAGAATGAAGAGGCATCAGAAAGGCAAGGTGTTTCTGGAGTAAGCATCATTGTAG
CCAAAGGACCTCCTCCCTGACACTTCACAATAGCTGATGAAGTGGAATCTTCCCATGATT
AAATTAAGACCAGTGATGTATAGACGAGCCCCTCGTACAATGTTAAGTGTGATCTCCACA
GTATCAAGAAGCTAATCTGACTTTCGGCAGCCAGCCTGGCTGCACCATTTCAGCTTTACT
CACAGGAACCTTGTTGGTTCTGTCACCACTGTGGTGGGTTTTCTCACTGATTTCTGACGT
TTTGTAAGCATATCATAAAAAGGAGCTTTTAAAAAGCTATTTCTAGTTCATTATTTTCAC
TCTAAGGATTTACTTTATTAAAATGGCTAATAAACTGAGATATTAATCACAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGGAGCTGCCGCCGCTGCCGTCGCCGCTTTCGCCTTCACCTCGGAGATCGAGAGCGGGGA
GCAGGCTCGCGAGCCGCCGCCGCCTCCGTCGCCGCCATGGGGAACCGAGTTGCGCGGGAA
GACTTCGAGTGGGTCTACACTGACCAGCCCCACGCCAGTCGGCGCCAGGAGATCCTGGCA
AAGTATCCCGAGATAAAATCTTTGATGAAACCTGATTCCAACTTGATATGGATTGTAATT
TTGATGGTTCTCAGTCAGTTAATTGCATTTTATTTAGTAAAGGACTTGGACTGGAAATGG
GTCATATTTTGGGCATATGCCTTTGGAAGCTGCATTAACCATTCCATGACTCTGGCTATT
CATGAAGTGTCCCACAATAGTGCCTTTGGCCACTGCAAACCTATGTGGAATCGTTGGTTT
GGAGTATTTGCTAATCTCCCTATTGGTGTTCCGTATTCCGTTTCCTTTAAGAGGTATCAC
ATGGATCATCATCGATACCTCGGAAGTGATGGCATCGACGTGGATATTCCAACTGATTTC
GAAGGCTGGTTCTTCTGCACCACTTTCAGAAAGTTTATGTGGGTTATTCTTCAGCCGCTC
TTTTACGCCTTTCGACCTCTGTTCATCAACCCCAAGCCAATTTCCTATCTGGAGATTATC
AATACTGTGATCCAGGTCACTTTTGACGTTGTGATTTACTACGTCTTGGGAATGAAATCT
TTAGTCTACATGCTGTCAGCATCCTTACTTGGTCTAGGTTTGCACCCAATTTCTGGACAT
TTTATAGCTGAACATTACATGTTCTTAAAAGGGCATGAAACTTACTCATATTACGGGCCT
CTGAACTTACTCACCTTCAACGTGGGCTACCACAACGAGCACCATGACTTCCCCAACATT
CCCGGGAAAAACCTTCCCCTGGTGAGGAAAATAGCAGCGGAGTACTATGACAACCTCCCC
CACTATAATTCCTGGATAAAAGTACTGTATGATTTTGTGACGGATGATACAATAAGTCCT
TATTCGAGAATGAAGAGGCATCAGAAAGGCAAGGTGTTTCTGGAGTAAGCATCATTGTAG
CCAAAGGACCTCCTCCCTGACACTTCACAATAGCTGATGAAGTGGAATCTTCCCATGATT
AAATTAAGACCAGTGATGTATAGACGAGCCCCTCGTACAATGTTAAGTGTGATCTCCACA
GTATCAAGAAGCTAATCTGACTTTCGGCAGCCAGCCTGGCTGCACCATTTCAGCTTTACT
CACAGGAACCTTGTTGGTTCTGTCACCACTGTGGTGGGTTTTCTCACTGATTTCTGACGT
TTTGTAAGCATATCATAAAAAGGAGCTTTTAAAAAGCTATTTCTAGTTCATTATTTTCAC
TCTAAGGATTTACTTTATTAAAATGGCTAATAAACTGAGATATTAATCACAAAAAAAAAA
AAAAAAAAAAAA
|
|
gi|41350411|gb|AAS00493.1| |
Protein identifier
|
gi|41350411|gb|AAS00493.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
178-930, gnl|bosTau2|chr16 (14017538-14016786) |
|
178-930, gnl|canFam2|chr7 (43121878-43121089) |
|
178-930, gnl|danRer3|chrNA (101748164-101748937) |
|
178-930, gnl|dasNov1|scaffold_4259 (47960-48752) |
|
178-930, gnl|echTel1|scaffold_283756 (328-1108) |
|
178-930, gnl|fr1|chrUn (197148396-197149172) |
|
178-930, gnl|galGal2|chr3 (13953161-13952400) |
|
178-930, gnl|hg17|chr1 (220683994-220684772) |
|
178-930, gnl|Hg17|chr1 (220684013-220684765) |
|
178-930, gnl|loxAfr1|scaffold_16495 (1227-447) |
|
178-930, gnl|mm7|chr1 (182262787-182261992) |
|
178-930, gnl|Mm7|chr1 (182262749-182261997) |
|
178-930, gnl|monDom2|scaffold_13 (31388446-31389212) |
|
178-930, gnl|oryCun1|scaffold_191205 (3726-4508) |
|
178-930, gnl|panTro1|chr1 (204495537-204496315) |
|
178-930, gnl|rheMac2|chr1 (146306414-146305636) |
|
178-930, gnl|rn3|chr13 (98435158-98434384) |
|
178-930, gnl|tetNig1|chr10 (5701863-5702633) |
|
178-930, gnl|xenTro1|scaffold_550 (428320-427561) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
178-930, gnl|bosTau2|chr16 (14017538-14016786) |
|
178-930, gnl|canFam2|chr7 (43121878-43121089) |
|
178-930, gnl|danRer3|chrNA (101748164-101748937) |
|
178-930, gnl|dasNov1|scaffold_4259 (47960-48752) |
|
178-930, gnl|echTel1|scaffold_283756 (328-1108) |
|
178-930, gnl|fr1|chrUn (197148396-197149172) |
|
178-930, gnl|galGal2|chr3 (13953161-13952400) |
|
178-930, gnl|hg17|chr1 (220683994-220684772) |
|
178-930, gnl|Hg17|chr1 (220684013-220684765) |
|
178-930, gnl|loxAfr1|scaffold_16495 (1227-447) |
|
178-930, gnl|mm7|chr1 (182262787-182261992) |
|
178-930, gnl|Mm7|chr1 (182262749-182261997) |
|
178-930, gnl|monDom2|scaffold_13 (31388446-31389212) |
|
178-930, gnl|oryCun1|scaffold_191205 (3726-4508) |
|
178-930, gnl|panTro1|chr1 (204495537-204496315) |
|
178-930, gnl|rheMac2|chr1 (146306414-146305636) |
|
178-930, gnl|rn3|chr13 (98435158-98434384) |
|
178-930, gnl|tetNig1|chr10 (5701863-5702633) |
|
178-930, gnl|xenTro1|scaffold_550 (428320-427561) |
|
spc (0.680195) |
|
ski (0.440205) |
|
lin (0.436808) |
|
csk (0.422238) |
|
amn (0.417711) |
|
duo (0.345602) |
|
cbl (0.344392) |
|
tbr (0.308356) |
|
lun (0.300978) |
|
tra (0.246184) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
nep (0.183925) |
|
gul (0.177588) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
mga (0.160205) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
liv (0.146284) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
kid (0.129735) |
|
ret (0.128733) |
|
thg (0.126791) |
|
eep (0.122564) |
|
cty (0.10408) |
|
spc (0.680195) |
|
ski (0.440205) |
|
lin (0.436808) |
|
csk (0.422238) |
|
amn (0.417711) |
|
duo (0.345602) |
|
cbl (0.344392) |
|
tbr (0.308356) |
|
lun (0.300978) |
|
tra (0.246184) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
nep (0.183925) |
|
gul (0.177588) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
mga (0.160205) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
liv (0.146284) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
kid (0.129735) |
|
ret (0.128733) |
|
thg (0.126791) |
|
eep (0.122564) |
|
cty (0.10408) |
