Non-Coding RNA Search

Ss1.1-Liv1-LVR010051H06.5

Sequence:


               
               ATTTCCAGGGCAGCTTCCCTGCAGCCTCTCCCTTCGGAGCTGGGACAGCAGCAGCATGAC
GATGATCCTCGGTTACTGGGACATCCGCGGGCTGGCCCACGCCATCCGCCTGCTCCTGGA
GTACACAGACTCCAGCTACGAGGAGAAGAAGTACACGCTGGGGGACGCTCCCGACTATGA
CAGAAGCCAGTGGCTGAGTGACAAATTCAAGCTGGGCCTGGACTTCCCCAATCTGCCCTA
CTTAATTGACGGGGCTCACAAGCTGACCCAGAGCAATGCCATCCTGCGCTATATTGCTCG
CAAGCACAACATGTGTGGGGAGACAGAGGAGGAGAAGATTCGAATGGACATTTTGGAGAA
CCAAGCTATGGATGTCCGTTTGCAGATGGCCAGGATCTGCTACAGCCCTGACTTTGAGAA
ACTGAAGCCTGGGTACTTGAAGGAGATCCCTGAAAAGATGAAGCCCTTCTCCGAGTTTCT
GGGGAAGAGGCCTTGGTTTGCAGGGGACAAGCTCACCTATGTGGATTTCCTGGCTTACGA
TGTCCTTGACCTGTACCGCATATTCGATCCCAAGTGCCTGGATGAATTCCCAAACCTGAA
AGCCTTCCTCAGCCGCTTTGAGGGCCTGGAGAGGATCTCAGCCTACATGAGGTCCAGCCG
CTTCCTGCCACACCCCGTGTATTCAAAGATGGCCATGTGGGGCAACAAGTAGTGCCCTGA
AGCAGGAGATGGAGTGAGGAGCAGGCCCTGGAGGACAGCTGGCCCTCCCTGCAGCCCACG
ACCAGACGTCTTGCTTGTCCTCCTTTGTTCCCATCAGCCTCACGTGGCCCCCTAAGCCTT
TCCCATGCCGCATTCACCATGATCTTGAGCGCTCTGCAGCCTCATGCCCTTCTGCCGTGA
AGTCAGCGGCTGAAGGTATCCTTTCTGCTCTGAGGCCAACCAGACCCGCCTTCCTTTCTG
TGCTTGCTCCTGCTGTGAGCAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTCCAGGGCAGCTTCCCTGCAGCCTCTCCCTTCGGAGCTGGGACAGCAGCAGCATGAC
GATGATCCTCGGTTACTGGGACATCCGCGGGCTGGCCCACGCCATCCGCCTGCTCCTGGA
GTACACAGACTCCAGCTACGAGGAGAAGAAGTACACGCTGGGGGACGCTCCCGACTATGA
CAGAAGCCAGTGGCTGAGTGACAAATTCAAGCTGGGCCTGGACTTCCCCAATCTGCCCTA
CTTAATTGACGGGGCTCACAAGCTGACCCAGAGCAATGCCATCCTGCGCTATATTGCTCG
CAAGCACAACATGTGTGGGGAGACAGAGGAGGAGAAGATTCGAATGGACATTTTGGAGAA
CCAAGCTATGGATGTCCGTTTGCAGATGGCCAGGATCTGCTACAGCCCTGACTTTGAGAA
ACTGAAGCCTGGGTACTTGAAGGAGATCCCTGAAAAGATGAAGCCCTTCTCCGAGTTTCT
GGGGAAGAGGCCTTGGTTTGCAGGGGACAAGCTCACCTATGTGGATTTCCTGGCTTACGA
TGTCCTTGACCTGTACCGCATATTCGATCCCAAGTGCCTGGATGAATTCCCAAACCTGAA
AGCCTTCCTCAGCCGCTTTGAGGGCCTGGAGAGGATCTCAGCCTACATGAGGTCCAGCCG
CTTCCTGCCACACCCCGTGTATTCAAAGATGGCCATGTGGGGCAACAAGTAGTGCCCTGA
AGCAGGAGATGGAGTGAGGAGCAGGCCCTGGAGGACAGCTGGCCCTCCCTGCAGCCCACG
ACCAGACGTCTTGCTTGTCCTCCTTTGTTCCCATCAGCCTCACGTGGCCCCCTAAGCCTT
TCCCATGCCGCATTCACCATGATCTTGAGCGCTCTGCAGCCTCATGCCCTTCTGCCGTGA
AGTCAGCGGCTGAAGGTATCCTTTCTGCTCTGAGGCCAACCAGACCCGCCTTCCTTTCTG
TGCTTGCTCCTGCTGTGAGCAGCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|7582395|gb|AAF64308.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7582395|gb|AAF64308.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               49-982, gnl|bosTau2|chr29 (27087397-27088314)
               

               
               49-982, gnl|Hg17|chr6 (111475424-111474458)
               

               
               49-982, gnl|Mm7|chr5 (115863167-115862342)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-982, gnl|bosTau2|chr29 (27087397-27088314)
               

               
               49-982, gnl|Hg17|chr6 (111475424-111474458)
               

               
               49-982, gnl|Mm7|chr5 (115863167-115862342)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               clu (0.478583)
               

               
               duo (0.345602)
               

               
               cli (0.152812)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.478583)
               

               
               duo (0.345602)
               

               
               cli (0.152812)
               

               
               jej (0.0989218)

	49-982, gnl\|bosTau2\|chr29 (27087397-27088314)
	49-982, gnl\|Hg17\|chr6 (111475424-111474458)
	49-982, gnl\|Mm7\|chr5 (115863167-115862342)