Ss1.1-Liv1-LVR010052C04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGCACTCGGTTGGGCGGACGCAGCGCCCAGAGCGGGCCCAGGCCTCATGGAGTTGGGG CTTGCGGGGCGCCGGGCGCTCGTCACCGGGGCGGGCAAAGGCATTGGGCGCAGCACGGTC CAGGCGTTGCACGCGGCGGGTGCGCAGGTGGTGGCCGTGAGCCGGACCCAGGCCGACTTG GATAGCTTGGTCCGCGAGTGCCCCGGGGTAGAGCCCGTGTGCGTGGACCTGGGCGACTGG GAGGCCACGGAGCGGGCGCTGGGTGGCGTGGGCCCCGTGGACCTGCTGGTGAACAACGCG GCGGTGGCGCTGATGCAGCCCTTCCTGGAGGTCACCAAGGAGGCCTGCGACAGGTCTTTT GAAGTGAACCTTCGGGCCGTCATCCAGGTGTCCCAGATCGTGGCCCGAGGCCTGATAGCT CGGGGAGCCCCGGGGTCCATCGTGAATGTCTCCAGCCAGGCCTCCCAGCGCGCCCTGCCT AACCACAGCGTCTACTGTTCCACCAAGGGGGCCTTGGACATGCTGACCAAGATGATGGCT CTGGAGCTCGGGCCACACAAGATCCGTGTGAATGCAGTGAACCCCACAGTGGTGATGACG CCCATGGGCCGGGCCAACTGGAGCAACCCCCCGAAGGCCAAGGCCATGCTGGACCGCATC CCACTGGGCAGGTTTGCTGAGGTGGAGCACGTGGTGGACGCCATCCTTTTCCTGCTGAGC GACCGGAGCAGCATGACCACCGGCTCCACTCTGCCGGTGGACGGAGGCTACCTGGCCACC TGAGCGCCCGCCCCACCCCCACCCCCACCCAATAAACGTGCTGCTTCTGCTTCTGCCCAG AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGCACTCGGTTGGGCGGACGCAGCGCCCAGAGCGGGCCCAGGCCTCATGGAGTTGGGG CTTGCGGGGCGCCGGGCGCTCGTCACCGGGGCGGGCAAAGGCATTGGGCGCAGCACGGTC CAGGCGTTGCACGCGGCGGGTGCGCAGGTGGTGGCCGTGAGCCGGACCCAGGCCGACTTG GATAGCTTGGTCCGCGAGTGCCCCGGGGTAGAGCCCGTGTGCGTGGACCTGGGCGACTGG GAGGCCACGGAGCGGGCGCTGGGTGGCGTGGGCCCCGTGGACCTGCTGGTGAACAACGCG GCGGTGGCGCTGATGCAGCCCTTCCTGGAGGTCACCAAGGAGGCCTGCGACAGGTCTTTT GAAGTGAACCTTCGGGCCGTCATCCAGGTGTCCCAGATCGTGGCCCGAGGCCTGATAGCT CGGGGAGCCCCGGGGTCCATCGTGAATGTCTCCAGCCAGGCCTCCCAGCGCGCCCTGCCT AACCACAGCGTCTACTGTTCCACCAAGGGGGCCTTGGACATGCTGACCAAGATGATGGCT CTGGAGCTCGGGCCACACAAGATCCGTGTGAATGCAGTGAACCCCACAGTGGTGATGACG CCCATGGGCCGGGCCAACTGGAGCAACCCCCCGAAGGCCAAGGCCATGCTGGACCGCATC CCACTGGGCAGGTTTGCTGAGGTGGAGCACGTGGTGGACGCCATCCTTTTCCTGCTGAGC GACCGGAGCAGCATGACCACCGGCTCCACTCTGCCGGTGGACGGAGGCTACCTGGCCACC TGAGCGCCCGCCCCACCCCCACCCCCACCCAATAAACGTGCTGCTTCTGCTTCTGCCCAG AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 197-355, gnl|bosTau2|chr19 (45664546-45664388) | |
| 197-355, gnl|canFam2|chr9 (3290424-3290260) | |
| 197-355, gnl|danRer3|chr19 (63543766-63543602) | |
| 197-355, gnl|echTel1|scaffold_324221 (50517-50681) | |
| 197-355, gnl|fr1|chrUn (303223903-303223740) | |
| 197-355, gnl|galGal2|chr18 (4788465-4788304) | |
| 197-355, gnl|hg17|chr17 (77588020-77588184) | |
| 197-355, gnl|Hg17|chr17 (77588180-77588022) | |
| 197-355, gnl|loxAfr1|scaffold_126626 (4326-4490) | |
| 197-355, gnl|mm7|chr11 (120835452-120835616) | |
| 197-355, gnl|Mm7|chr11 (120835612-120835454) | |
| 197-355, gnl|monDom2|scaffold_18 (15423234-15423395) | |
| 197-355, gnl|oryCun1|scaffold_79315 (180-344) | |
| 197-355, gnl|panTro1|chr19 (81352256-81352420) | |
| 197-355, gnl|rheMac2|chr16 (77475378-77475542) | |
| 197-355, gnl|tetNig1|chrUn_random (91572928-91573090) | |
| 197-355, gnl|xenTro1|scaffold_299 (185349-185511) | |
| 394-498, gnl|bosTau2|chr19 (45664151-45664047) | |
| 394-498, gnl|canFam2|chr9 (3290746-3290608) | |
| 394-498, gnl|danRer3|chr19 (63545469-63545341) | |
| 394-498, gnl|echTel1|scaffold_324221 (50195-50349) | |
| 394-498, gnl|fr1|chrUn (303224332-303224208) | |
| 394-498, gnl|galGal2|chr18 (4789883-4789767) | |
| 394-498, gnl|hg17|chr17 (77587698-77587836) | |
| 394-498, gnl|Hg17|chr17 (77587811-77587707) | |
| 394-498, gnl|loxAfr1|scaffold_126626 (3981-4119) | |
| 394-498, gnl|mm7|chr11 (120835121-120835258) | |
| 394-498, gnl|Mm7|chr11 (120835235-120835131) | |
| 394-498, gnl|monDom2|scaffold_18 (15422735-15422873) | |
| 394-498, gnl|panTro1|chr19 (81351934-81352072) | |
| 394-498, gnl|rheMac2|chr16 (77475056-77475194) | |
| 394-498, gnl|tetNig1|chrUn_random (91572270-91572382) | |
| 394-498, gnl|xenTro1|scaffold_299 (184224-184372) | |
| 560-677, gnl|bosTau2|chr19 (45663794-45663677) | |
| 560-677, gnl|canFam2|chr9 (3291113-3290946) | |
| 560-677, gnl|danRer3|chr19 (63560453-63560588) | |
| 560-677, gnl|dasNov1|scaffold_283864 (1299-1418) | |
| 560-677, gnl|echTel1|scaffold_324221 (49687-49811) | |
| 560-677, gnl|fr1|chrUn (303224969-303224840) | |
| 560-677, gnl|galGal2|chr18 (4790303-4790148) | |
| 560-677, gnl|hg17|chr17 (77587340-77587505) | |
| 560-677, gnl|Hg17|chr17 (77587475-77587358) | |
| 560-677, gnl|mm7|chr11 (120834767-120834923) | |
| 560-677, gnl|Mm7|chr11 (120834902-120834785) | |
| 560-677, gnl|monDom2|scaffold_18 (15420641-15420799) | |
| 560-677, gnl|panTro1|chr19_random (56504768-56504933) | |
| 560-677, gnl|rheMac2|chr16 (77474698-77474863) | |
| 560-677, gnl|tetNig1|chrUn_random (91571793-91571919) | |
| 560-677, gnl|xenTro1|scaffold_299 (183377-183509) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 197-355, gnl|bosTau2|chr19 (45664546-45664388) | |
| 197-355, gnl|canFam2|chr9 (3290424-3290260) | |
| 197-355, gnl|danRer3|chr19 (63543766-63543602) | |
| 197-355, gnl|echTel1|scaffold_324221 (50517-50681) | |
| 197-355, gnl|fr1|chrUn (303223903-303223740) | |
| 197-355, gnl|galGal2|chr18 (4788465-4788304) | |
| 197-355, gnl|hg17|chr17 (77588020-77588184) | |
| 197-355, gnl|Hg17|chr17 (77588180-77588022) | |
| 197-355, gnl|loxAfr1|scaffold_126626 (4326-4490) | |
| 197-355, gnl|mm7|chr11 (120835452-120835616) | |
| 197-355, gnl|Mm7|chr11 (120835612-120835454) | |
| 197-355, gnl|monDom2|scaffold_18 (15423234-15423395) | |
| 197-355, gnl|oryCun1|scaffold_79315 (180-344) | |
| 197-355, gnl|panTro1|chr19 (81352256-81352420) | |
| 197-355, gnl|rheMac2|chr16 (77475378-77475542) | |
| 197-355, gnl|tetNig1|chrUn_random (91572928-91573090) | |
| 197-355, gnl|xenTro1|scaffold_299 (185349-185511) | |
| 394-498, gnl|bosTau2|chr19 (45664151-45664047) | |
| 394-498, gnl|canFam2|chr9 (3290746-3290608) | |
| 394-498, gnl|danRer3|chr19 (63545469-63545341) | |
| 394-498, gnl|echTel1|scaffold_324221 (50195-50349) | |
| 394-498, gnl|fr1|chrUn (303224332-303224208) | |
| 394-498, gnl|galGal2|chr18 (4789883-4789767) | |
| 394-498, gnl|hg17|chr17 (77587698-77587836) | |
| 394-498, gnl|Hg17|chr17 (77587811-77587707) | |
| 394-498, gnl|loxAfr1|scaffold_126626 (3981-4119) | |
| 394-498, gnl|mm7|chr11 (120835121-120835258) | |
| 394-498, gnl|Mm7|chr11 (120835235-120835131) | |
| 394-498, gnl|monDom2|scaffold_18 (15422735-15422873) | |
| 394-498, gnl|panTro1|chr19 (81351934-81352072) | |
| 394-498, gnl|rheMac2|chr16 (77475056-77475194) | |
| 394-498, gnl|tetNig1|chrUn_random (91572270-91572382) | |
| 394-498, gnl|xenTro1|scaffold_299 (184224-184372) | |
| 560-677, gnl|bosTau2|chr19 (45663794-45663677) | |
| 560-677, gnl|canFam2|chr9 (3291113-3290946) | |
| 560-677, gnl|danRer3|chr19 (63560453-63560588) | |
| 560-677, gnl|dasNov1|scaffold_283864 (1299-1418) | |
| 560-677, gnl|echTel1|scaffold_324221 (49687-49811) | |
| 560-677, gnl|fr1|chrUn (303224969-303224840) | |
| 560-677, gnl|galGal2|chr18 (4790303-4790148) | |
| 560-677, gnl|hg17|chr17 (77587340-77587505) | |
| 560-677, gnl|Hg17|chr17 (77587475-77587358) | |
| 560-677, gnl|mm7|chr11 (120834767-120834923) | |
| 560-677, gnl|Mm7|chr11 (120834902-120834785) | |
| 560-677, gnl|monDom2|scaffold_18 (15420641-15420799) | |
| 560-677, gnl|panTro1|chr19_random (56504768-56504933) | |
| 560-677, gnl|rheMac2|chr16 (77474698-77474863) | |
| 560-677, gnl|tetNig1|chrUn_random (91571793-91571919) | |
| 560-677, gnl|xenTro1|scaffold_299 (183377-183509) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| cli (0.611247) | |
| ute (0.398353) | |
| cly (0.361925) | |
| ill (0.351185) | |
| mcp (0.341297) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| eru (0.240096) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| cov (0.132153) | |
| pgl (0.118483) | |
| eje (0.0988338) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.611247) | |
| ute (0.398353) | |
| cly (0.361925) | |
| ill (0.351185) | |
| mcp (0.341297) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| eru (0.240096) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| cov (0.132153) | |
| pgl (0.118483) | |
| eje (0.0988338) |