Non-Coding RNA Search

Ss1.1-Liv1-LVR010052D11.5

Sequence:


               
               AGGGAAGCACCAGGGCAAAGGACGTGTTTAGACCATCTCATTCCTCCGGCTTGTTTTTTT
CTGGAGCAAGTGAGTATCTCCCATGGCCTATAAGATCTGATATCCAGGGTGACTGAAGTT
TCCGAGTGCTAAGCCACTTCTCAGCTTTGACCAGTCCTTCATCCCAAGTTTAGACCATCT
CATTCCTCCGGCTTGTTTTTTTCTGGAGCAAGGCTGTTTTGCAAACCCACCATGATCCAG
ACTGAGCTGCTCTTTTGCTGTGTCTTGCTGTCCTCGGTGACTGCCTTTCCAAGAAGTGCC
CAAGAAGGGGCCCTGACCTTCCAGCCACCTTTCACAGAAACTGGGGGTCCTCTGGACATG
CTCTCCAATCAGATCTCTCTCCCAGATCCCAAGATGTGTCAGGATCTCTTGCACGTGGTC
CCCTCCTTAGCCCCTCTGCCTGAGTACCTATCCAACTTAGCTCTGGAGGTGGCCCTGGAG
GAGGTCGGCTGCCTGACTGAGGCCCACATGCTGGAACTTCAGCTTGTTAAGATGGGAGGA
AAGGACACCACTGAAACCCTCATCCGTGAGAGCAAAAAGCGCAATGAAGAAAAAGGGATC
AACGATGGTGAGATCATGCTGAGGGGTCTAGAAGGATCCCCGGGGGAGCTTAGGCGGGTC
CAGCGCTCAGTTACCCTTCCTGAGGCATGTCAGCAGGAGGGTAGATGGGTGCTCTACGAG
CTAGCAGAACTGATAGGTGAGTTTGCTGAGAAGCTCCCTTCCACTGAGCTGGTAAGAGAG
TTAAAGACAGCTGCTGTTGATGTCACCCAGAAGTGCACAGATGAGTCCTGGCAGCATTTG
GAAGCAGTAGGCAATCGGTTGATGAAAAACCCTGAGACCAAAGATTTCACAATGCCTATG
GACGATCAGATATACTTTGTCAAGCGTTCTGTAGCCATTCTGGCACGTGTTATACTGGAA
TTCATACAGAAATATTTCCAGGAGTTTTTTGGATAGGGAAGCCCTCTGAGGCATCATATT
TCCTTTCTCAAATGTCTCTAAAAGACATGTGACTAGAGTCAGCTTTGCTAGCTCTCTTAG
TTGGTCCTAAGCCTATTTTTTCTTTCAATTTCCCTCTAAGTTGTCAAATACTGTGGGTGT
ATTAGGTACTAGACTTGAGGGATATTGTAATCTTTCACCATTCATCTACCTTTCTAGTTT
CCCAACTGGATGCTACACCTTGCTTATGTTAATTTTTAAACTGAAAAAAGATTAAAAGTT
GCTTCTATATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGAAGCACCAGGGCAAAGGACGTGTTTAGACCATCTCATTCCTCCGGCTTGTTTTTTT
CTGGAGCAAGTGAGTATCTCCCATGGCCTATAAGATCTGATATCCAGGGTGACTGAAGTT
TCCGAGTGCTAAGCCACTTCTCAGCTTTGACCAGTCCTTCATCCCAAGTTTAGACCATCT
CATTCCTCCGGCTTGTTTTTTTCTGGAGCAAGGCTGTTTTGCAAACCCACCATGATCCAG
ACTGAGCTGCTCTTTTGCTGTGTCTTGCTGTCCTCGGTGACTGCCTTTCCAAGAAGTGCC
CAAGAAGGGGCCCTGACCTTCCAGCCACCTTTCACAGAAACTGGGGGTCCTCTGGACATG
CTCTCCAATCAGATCTCTCTCCCAGATCCCAAGATGTGTCAGGATCTCTTGCACGTGGTC
CCCTCCTTAGCCCCTCTGCCTGAGTACCTATCCAACTTAGCTCTGGAGGTGGCCCTGGAG
GAGGTCGGCTGCCTGACTGAGGCCCACATGCTGGAACTTCAGCTTGTTAAGATGGGAGGA
AAGGACACCACTGAAACCCTCATCCGTGAGAGCAAAAAGCGCAATGAAGAAAAAGGGATC
AACGATGGTGAGATCATGCTGAGGGGTCTAGAAGGATCCCCGGGGGAGCTTAGGCGGGTC
CAGCGCTCAGTTACCCTTCCTGAGGCATGTCAGCAGGAGGGTAGATGGGTGCTCTACGAG
CTAGCAGAACTGATAGGTGAGTTTGCTGAGAAGCTCCCTTCCACTGAGCTGGTAAGAGAG
TTAAAGACAGCTGCTGTTGATGTCACCCAGAAGTGCACAGATGAGTCCTGGCAGCATTTG
GAAGCAGTAGGCAATCGGTTGATGAAAAACCCTGAGACCAAAGATTTCACAATGCCTATG
GACGATCAGATATACTTTGTCAAGCGTTCTGTAGCCATTCTGGCACGTGTTATACTGGAA
TTCATACAGAAATATTTCCAGGAGTTTTTTGGATAGGGAAGCCCTCTGAGGCATCATATT
TCCTTTCTCAAATGTCTCTAAAAGACATGTGACTAGAGTCAGCTTTGCTAGCTCTCTTAG
TTGGTCCTAAGCCTATTTTTTCTTTCAATTTCCCTCTAAGTTGTCAAATACTGTGGGTGT
ATTAGGTACTAGACTTGAGGGATATTGTAATCTTTCACCATTCATCTACCTTTCTAGTTT
CCCAACTGGATGCTACACCTTGCTTATGTTAATTTTTAAACTGAAAAAAGATTAAAAGTT
GCTTCTATATCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|51491902|ref|NP_001003925.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51491902|ref|NP_001003925.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               505-1044, gnl|bosTau2|chr5 (33274514-33275053)
               

               
               505-1044, gnl|Hg17|chr12 (55063616-55058378)
               

               
               505-1044, gnl|Mm7|chr10 (127756217-127756755)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               505-1044, gnl|bosTau2|chr5 (33274514-33275053)
               

               
               505-1044, gnl|Hg17|chr12 (55063616-55058378)
               

               
               505-1044, gnl|Mm7|chr10 (127756217-127756755)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fli (1.0144)
               

               
               cli (0.458435)
               

               
               lun (0.451467)
               

               
               elu (0.385356)
               

               
               eli (0.151814)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (1.0144)
               

               
               cli (0.458435)
               

               
               lun (0.451467)
               

               
               elu (0.385356)
               

               
               eli (0.151814)

	505-1044, gnl\|bosTau2\|chr5 (33274514-33275053)
	505-1044, gnl\|Hg17\|chr12 (55063616-55058378)
	505-1044, gnl\|Mm7\|chr10 (127756217-127756755)

	fli (1.0144)
	cli (0.458435)
	lun (0.451467)
	elu (0.385356)
	eli (0.151814)