Ss1.1-Liv1-LVR010052E09.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGGCTGGAGCCAGACTAGGGGCTGAGGAGGAGACGTGGCCTTATAAATCGGGGCCAGT GAACTAGGAGGTGTCAGGAAAGCAGATGCAAACACAGCCTTAGAAGATGGGCGAGGAAGA GAGAGACAGAGACAGAGACATTATGACCACCTTCCCGCGAGCAGCCAGCCCCCCCAGGCA GCTCCTATGCCCAGAAGATGAAGACCCCAACCTGGATGAGTACGACCTCTATAGCCTGGC TCATTCTTACCTGGGAGGGAGAGCCCGGAAAGGTCGCACCAAGAGAGAGGCTGCTGCCAA CACCAACCGCCCCAGCCCTGGTGGCCACGAGAGGAAGCTGGTGACCAAGATCCAGAACAC GGAGCGGAAAAAGCGAGCAGCACGGACCTGAAACAGAACTCGAGGTGAGGCCAGAGCACA GACACCCCACAGCAATGGAGACAGGACTGCGGAGGAATCAGTGCCTGGGGGCGGGATCCA GGCCTGCTGGCCGCCCTGCCCCTCCACCCCCAGGACTTACCCCACGTGACTGAGGCTCGA GGGGCTGCCAGGGAAGCCGCCCCAGCCTGAGAAAAAGGGCAGGTTGGGGAGCAAGAGGCA GGGGGTAGAGAAAAGCAGGGTCACCCCAAACAAAAAAAAAAGAAAGATGCTAAAGAGGCT GGAGCTTCCCAAGGGTGACAGTGACAATAAACAAAGTACAGCAGCTGCAAAAAAAAAAAA CTGCTTTCCTTCTGCCAGGTGAGGCCAGAGCACAGACACCCCACAGCAATGGAGACAGGA CTGCGGAGGAATCAGTGCCTGGGGGCGGGATCCAGGCCTGCTGGCCGCCCTGCCCCTCCA CCCCCAGGACTTACCCCACGTGACTGAGGCTCGAGGGGCTGCCAGGGAAGCCGCCCCAGC CTGAGAAAAAGGGCAGGTTGGGGAGCAAGAGGCAGGGGGTAGAGAAAAGCAGGGTCACCC CAAACAAAAAAAAAAGAAAGATGCTAAAGAGGCTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGGCTGGAGCCAGACTAGGGGCTGAGGAGGAGACGTGGCCTTATAAATCGGGGCCAGT GAACTAGGAGGTGTCAGGAAAGCAGATGCAAACACAGCCTTAGAAGATGGGCGAGGAAGA GAGAGACAGAGACAGAGACATTATGACCACCTTCCCGCGAGCAGCCAGCCCCCCCAGGCA GCTCCTATGCCCAGAAGATGAAGACCCCAACCTGGATGAGTACGACCTCTATAGCCTGGC TCATTCTTACCTGGGAGGGAGAGCCCGGAAAGGTCGCACCAAGAGAGAGGCTGCTGCCAA CACCAACCGCCCCAGCCCTGGTGGCCACGAGAGGAAGCTGGTGACCAAGATCCAGAACAC GGAGCGGAAAAAGCGAGCAGCACGGACCTGAAACAGAACTCGAGGTGAGGCCAGAGCACA GACACCCCACAGCAATGGAGACAGGACTGCGGAGGAATCAGTGCCTGGGGGCGGGATCCA GGCCTGCTGGCCGCCCTGCCCCTCCACCCCCAGGACTTACCCCACGTGACTGAGGCTCGA GGGGCTGCCAGGGAAGCCGCCCCAGCCTGAGAAAAAGGGCAGGTTGGGGAGCAAGAGGCA GGGGGTAGAGAAAAGCAGGGTCACCCCAAACAAAAAAAAAAGAAAGATGCTAAAGAGGCT GGAGCTTCCCAAGGGTGACAGTGACAATAAACAAAGTACAGCAGCTGCAAAAAAAAAAAA CTGCTTTCCTTCTGCCAGGTGAGGCCAGAGCACAGACACCCCACAGCAATGGAGACAGGA CTGCGGAGGAATCAGTGCCTGGGGGCGGGATCCAGGCCTGCTGGCCGCCCTGCCCCTCCA CCCCCAGGACTTACCCCACGTGACTGAGGCTCGAGGGGCTGCCAGGGAAGCCGCCCCAGC CTGAGAAAAAGGGCAGGTTGGGGAGCAAGAGGCAGGGGGTAGAGAAAAGCAGGGTCACCC CAAACAAAAAAAAAAGAAAGATGCTAAAGAGGCTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 495-609, - strand, RNAz p=0.841109 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 495-609, - strand, RNAz p=0.841109 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-255, gnl|bosTau2|chr25 (25032512-25032262) | |
| 1-255, gnl|canFam2|chr6 (21235156-21234672) | |
| 1-255, gnl|dasNov1|scaffold_85179 (4967-5453) | |
| 1-255, gnl|echTel1|scaffold_313665 (39750-40231) | |
| 1-255, gnl|hg17|chr16 (28457576-28458064) | |
| 1-255, gnl|Hg17|chr16 (28457868-28457617) | |
| 1-255, gnl|mm7|chr7 (122721858-122722300) | |
| 1-255, gnl|Mm7|chr7 (122722119-122721880) | |
| 1-255, gnl|monDom2|scaffold_5 (119543147-119543720) | |
| 1-255, gnl|panTro1|chr18 (29202992-29202504) | |
| 1-255, gnl|rheMac2|chr20 (28288029-28287530) | |
| 1-255, gnl|rn3|chr1 (185922006-185922448) | |
| 403-707, gnl|bosTau2|chr25 (25031357-25031060) | |
| 403-707, gnl|canFam2|chr6 (21236447-21236111) | |
| 403-707, gnl|dasNov1|scaffold_85179 (3746-4142) | |
| 403-707, gnl|echTel1|scaffold_221926 (1006-643) | |
| 403-707, gnl|hg17|chr16 (28456174-28456518) | |
| 403-707, gnl|Hg17|chr16 (28456493-28456191) | |
| 403-707, gnl|loxAfr1|scaffold_70526 (9309-9635) | |
| 403-707, gnl|mm7|chr7 (122719792-122720162) | |
| 403-707, gnl|Mm7|chr7 (122720139-122719809) | |
| 403-707, gnl|monDom2|scaffold_5 (119541503-119541821) | |
| 403-707, gnl|panTro1|chr18 (29204402-29204056) | |
| 403-707, gnl|rheMac2|chr20 (28289441-28289096) | |
| 403-707, gnl|rn3|chr1 (185920180-185920498) | |
| 721-957, gnl|bosTau2|chr25 (25031373-25031141) | |
| 721-957, gnl|canFam2|chr6 (21236447-21236111) | |
| 721-957, gnl|dasNov1|scaffold_85179 (3746-4142) | |
| 721-957, gnl|echTel1|scaffold_221926 (1006-643) | |
| 721-957, gnl|hg17|chr16 (28456174-28456518) | |
| 721-957, gnl|Hg17|chr16 (28456512-28456277) | |
| 721-957, gnl|loxAfr1|scaffold_70526 (9309-9635) | |
| 721-957, gnl|mm7|chr7 (122719792-122720162) | |
| 721-957, gnl|Mm7|chr7 (122720156-122719890) | |
| 721-957, gnl|monDom2|scaffold_5 (119541503-119541821) | |
| 721-957, gnl|panTro1|chr18 (29204402-29204056) | |
| 721-957, gnl|rheMac2|chr20 (28289441-28289096) | |
| 721-957, gnl|rn3|chr1 (185920180-185920498) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-255, gnl|bosTau2|chr25 (25032512-25032262) | |
| 1-255, gnl|canFam2|chr6 (21235156-21234672) | |
| 1-255, gnl|dasNov1|scaffold_85179 (4967-5453) | |
| 1-255, gnl|echTel1|scaffold_313665 (39750-40231) | |
| 1-255, gnl|hg17|chr16 (28457576-28458064) | |
| 1-255, gnl|Hg17|chr16 (28457868-28457617) | |
| 1-255, gnl|mm7|chr7 (122721858-122722300) | |
| 1-255, gnl|Mm7|chr7 (122722119-122721880) | |
| 1-255, gnl|monDom2|scaffold_5 (119543147-119543720) | |
| 1-255, gnl|panTro1|chr18 (29202992-29202504) | |
| 1-255, gnl|rheMac2|chr20 (28288029-28287530) | |
| 1-255, gnl|rn3|chr1 (185922006-185922448) | |
| 403-707, gnl|bosTau2|chr25 (25031357-25031060) | |
| 403-707, gnl|canFam2|chr6 (21236447-21236111) | |
| 403-707, gnl|dasNov1|scaffold_85179 (3746-4142) | |
| 403-707, gnl|echTel1|scaffold_221926 (1006-643) | |
| 403-707, gnl|hg17|chr16 (28456174-28456518) | |
| 403-707, gnl|Hg17|chr16 (28456493-28456191) | |
| 403-707, gnl|loxAfr1|scaffold_70526 (9309-9635) | |
| 403-707, gnl|mm7|chr7 (122719792-122720162) | |
| 403-707, gnl|Mm7|chr7 (122720139-122719809) | |
| 403-707, gnl|monDom2|scaffold_5 (119541503-119541821) | |
| 403-707, gnl|panTro1|chr18 (29204402-29204056) | |
| 403-707, gnl|rheMac2|chr20 (28289441-28289096) | |
| 403-707, gnl|rn3|chr1 (185920180-185920498) | |
| 721-957, gnl|bosTau2|chr25 (25031373-25031141) | |
| 721-957, gnl|canFam2|chr6 (21236447-21236111) | |
| 721-957, gnl|dasNov1|scaffold_85179 (3746-4142) | |
| 721-957, gnl|echTel1|scaffold_221926 (1006-643) | |
| 721-957, gnl|hg17|chr16 (28456174-28456518) | |
| 721-957, gnl|Hg17|chr16 (28456512-28456277) | |
| 721-957, gnl|loxAfr1|scaffold_70526 (9309-9635) | |
| 721-957, gnl|mm7|chr7 (122719792-122720162) | |
| 721-957, gnl|Mm7|chr7 (122720156-122719890) | |
| 721-957, gnl|monDom2|scaffold_5 (119541503-119541821) | |
| 721-957, gnl|panTro1|chr18 (29204402-29204056) | |
| 721-957, gnl|rheMac2|chr20 (28289441-28289096) | |
| 721-957, gnl|rn3|chr1 (185920180-185920498) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| pty (0.713572) | |
| nca (0.410621) | |
| fli (0.405762) | |
| nmm (0.265604) | |
| ute (0.265569) | |
| gul (0.177588) | |
| eli (0.151814) | |
| tra (0.123092) | |
| cly (0.120642) | |
| clu (0.119646) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.713572) | |
| nca (0.410621) | |
| fli (0.405762) | |
| nmm (0.265604) | |
| ute (0.265569) | |
| gul (0.177588) | |
| eli (0.151814) | |
| tra (0.123092) | |
| cly (0.120642) | |
| clu (0.119646) | |
| jca (0.11396) | |
| nbm (0.0993246) |