Non-Coding RNA Search

Ss1.1-Liv1-LVR010052H08.5

Sequence:


               
               ATCCAGCCTTCGCCGCCGCCAACTTCTCTGGATGGGACCAGAAGTTTCTAGCCGGCCAGT
TGCTACCTCCCTTTATCTCCTCCTTCCCCTTTGGCAGCGTGGAGGCTATTTCCAGACACT
TCCAGCCCTCTCCGGCCACGTCACCCCCTCCTTTAATTCATAAAGGTGCCCAGCGCCGGC
TTCCCGGACACGTCGGCAGCCCACAAGACTCTAGCTCCGGCCTCGGCCAGCGAGCCACTC
TGCGCCTGGAAGTCCGGCACCCCGCGACCCTGTGACCCGGCACCCCGGCGGCTGCCCCTC
CGGGCCGACCCCGACCCAGCATGAGCGCTGCCACCCACTCGCCGATGGTTCAGATGGCGT
CCGGCAACGGCGCCGGCGACCGCGACCCCCTGCCCCCCGGCTGGGAAATCAAGATCGATC
CGCAAACCGGCTGGCCCTTCTTCGTGGACCACAACAGCCGCACCACGACGTGGAACGACC
CGCGCGTGCCCCCCGAGGGCCCCAAGGAAACCACATCTTCTGCGAACGGGCCTTCGCGGG
AGGGCTCCAGGGCACTCCCCACTAGGGAAGGCCATGCCGTGTACCCCCAGCTCCGGCCAG
GCTACATTCCCATCCCTGTCCTCCACGAAGGCGCTGAGAGCCGGCAGCTGCGCCCCTTCT
TTGCCCACCCCCAGCCGGGGGTGCAGCGCTTCCAAGCTGAGGCGGCCCCCACCGCTCCAC
AGACATCCCAGACACCTCTGCGGGGTGTGGTGGAAGCCACCCAGCCAGATAAGCAGTGCG
GACAGGCAGTGGCAGCTGCGGGAGCCCAGCCCCCAGCCTCCCAGGGACCTGAGCGGTCCC
AATCTCCAGCTGCCTCAGACTGCTCGTCCTCATCCTCCTCGGCCAGCCTGCCTTCCTCCT
CAGGCAGGAGCAGCCTGGGCAGTCACCAACTCCCCCGGGGCTACATCTCCATCCCTGTGA
TACATGAGCAGAATGTCACCCGGCCGGCAGCCCAGCCCTCCTTCCACCAAGCCCAGAAGA
CCCACTACCCAGCTCAGCAGGGTGAATACCAGACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCAGCCTTCGCCGCCGCCAACTTCTCTGGATGGGACCAGAAGTTTCTAGCCGGCCAGT
TGCTACCTCCCTTTATCTCCTCCTTCCCCTTTGGCAGCGTGGAGGCTATTTCCAGACACT
TCCAGCCCTCTCCGGCCACGTCACCCCCTCCTTTAATTCATAAAGGTGCCCAGCGCCGGC
TTCCCGGACACGTCGGCAGCCCACAAGACTCTAGCTCCGGCCTCGGCCAGCGAGCCACTC
TGCGCCTGGAAGTCCGGCACCCCGCGACCCTGTGACCCGGCACCCCGGCGGCTGCCCCTC
CGGGCCGACCCCGACCCAGCATGAGCGCTGCCACCCACTCGCCGATGGTTCAGATGGCGT
CCGGCAACGGCGCCGGCGACCGCGACCCCCTGCCCCCCGGCTGGGAAATCAAGATCGATC
CGCAAACCGGCTGGCCCTTCTTCGTGGACCACAACAGCCGCACCACGACGTGGAACGACC
CGCGCGTGCCCCCCGAGGGCCCCAAGGAAACCACATCTTCTGCGAACGGGCCTTCGCGGG
AGGGCTCCAGGGCACTCCCCACTAGGGAAGGCCATGCCGTGTACCCCCAGCTCCGGCCAG
GCTACATTCCCATCCCTGTCCTCCACGAAGGCGCTGAGAGCCGGCAGCTGCGCCCCTTCT
TTGCCCACCCCCAGCCGGGGGTGCAGCGCTTCCAAGCTGAGGCGGCCCCCACCGCTCCAC
AGACATCCCAGACACCTCTGCGGGGTGTGGTGGAAGCCACCCAGCCAGATAAGCAGTGCG
GACAGGCAGTGGCAGCTGCGGGAGCCCAGCCCCCAGCCTCCCAGGGACCTGAGCGGTCCC
AATCTCCAGCTGCCTCAGACTGCTCGTCCTCATCCTCCTCGGCCAGCCTGCCTTCCTCCT
CAGGCAGGAGCAGCCTGGGCAGTCACCAACTCCCCCGGGGCTACATCTCCATCCCTGTGA
TACATGAGCAGAATGTCACCCGGCCGGCAGCCCAGCCCTCCTTCCACCAAGCCCAGAAGA
CCCACTACCCAGCTCAGCAGGGTGAATACCAGACCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|53134221|emb|CAG32312.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|53134221|emb|CAG32312.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               832-950, - strand, RNAz p=0.905563

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               832-950, - strand, RNAz p=0.905563

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               223-507, gnl|bosTau2|chr26 (25514876-25514592)
               

               
               223-507, gnl|Hg17|chr10 (121401107-121401358)
               

               
               223-507, gnl|Mm7|chr7 (124620351-124620603)
               


               
               832-1054, gnl|bosTau2|chr26 (25496527-25496305)
               

               
               832-1054, gnl|Hg17|chr10 (121421755-121421974)
               

               
               832-1054, gnl|Mm7|chr7 (124638363-124638582)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               223-507, gnl|bosTau2|chr26 (25514876-25514592)
               

               
               223-507, gnl|Hg17|chr10 (121401107-121401358)
               

               
               223-507, gnl|Mm7|chr7 (124620351-124620603)
               


               
               832-1054, gnl|bosTau2|chr26 (25496527-25496305)
               

               
               832-1054, gnl|Hg17|chr10 (121421755-121421974)
               

               
               832-1054, gnl|Mm7|chr7 (124638363-124638582)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fli (0.202881)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               hyp (0.142837)

	223-507, gnl\|bosTau2\|chr26 (25514876-25514592)
	223-507, gnl\|Hg17\|chr10 (121401107-121401358)
	223-507, gnl\|Mm7\|chr7 (124620351-124620603)

	832-1054, gnl\|bosTau2\|chr26 (25496527-25496305)
	832-1054, gnl\|Hg17\|chr10 (121421755-121421974)
	832-1054, gnl\|Mm7\|chr7 (124638363-124638582)