Ss1.1-Liv1-LVR010054D05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAGAGGCTCGAACAGATCCCCCCGATGGTCAGCAAGATTCATAGTGCAGCAGGAGCAAA GAAAAAACCTTAGGAAAAGAAGTTTTATTATTGATGCAAGCCCTAAACACCCTTTCAACT CCAGAAGAGAAGCTGGCAGCTCTCTGTAAGAAATATGCTGACCTTCTGGAGGAGAGCAGG AACGTTCAGAAGCAAATGAAAATTCTACAGAAGAAGCAAGCCCAGATCGTGAAAGAGAAG GTTCACTTGCAGAGTGAACACAGCAAGGCCATCTTGGCAAGAAGCAAACTCGAGTCTCTT TGCAGGGAGCTTCAGCGGCACAATAAGACGTTAAAGGAAGAAAACATGCAGCAGGCGCGA GAGGAGGAGGAAAGACGGAAGGAAGCCACGGCGCACTTCCAGATGACGCTGAATGAGATC CAGGCGCAGCTGGAGCAGCACGACCTGCACAACGCCAAGCTCCGCCAGGAGAACATGGAG CTGGGAGAGAAGCTCAAGAAGCTCATCGAGCAGTACGCGCTGCGGGAGGAGCACATTGAT AAAGTGTTCAAACATAAGGAACTTCAGCAACAGCTTGTGGACGCCAAGCTTCAGCAGACA ACGCAGCTGATCAAAGAAGCAGATGAGAAACATCAGAGAGAGAGAGAGTTTTTACTAAAA GAAGCAACGGAATCGAGACACAAATATGAACAAATGAAACAGCAAGAAGTACAACTGAAA CAGCAGCTTTCCCTTTATATGGATAAGTTTGAAGAATTCCAGACTACCATGGCAAAAAGC AACGAACTGTTTACAACCTTCCGGCAGGAAATGGAAAAGATGACGAAGAAAATCAAAAAA CTGGAAAAAGAGACAATCATATGGCGGAGCAAATGGGAAAACAACAATAAGGCTCTCCTG CAGATGGCTGAAGAGAAAACTGTCCGCGACAAAGAGTACAAGGCCTTTCAGATAAAGCTG GACCGGCTGGAGAAGCTGTGCCGAGCCCTGCAGACGGAGCGGAACGAGCTCAACGAGAAG GTGGAGGTGCTGAAGGGCCAGGTGCCTGAGTGGGGTGCGGGCGCGGGCCCAGCGCCCCCC GGGGCCCAGCCCTGCGCCGCCCTGCCTGCCCCGCAGGAGTCCCGCACCGCCTGGCCAGTG GCCCCTGGGGTCCCCCCGGAGGCCGCGTCCCCGGGCGCCGGGCCCGGCATCGAGTCCGTG GACTGAGACCCAGTGCGACCACTGTATGGAGAGCTCTATTTTGTGTATACCTTCCTCTGT TAGTAGTAACGATTGGTTTTGTGGTGACAATTTTCTTACTTTTTCTACCATATCTGTATT TTCTTAGAACTACTGGACTTATGTGGTACAGGAGGCTGCTTGGCAGTTCTGATTAGTTTC CCTCCACATCTCGCTCAGCTGCGCTGGCTGCACATCCGCCTCGTTCCCCTCCGTCGGATG CATGTGTTCACTGCCTTGTCCTCTCCCCCGCCCCTTGCGCACGACTGTCACTCACCAGGG CCGCCCCTCACAAGGGAACGTTGTTCTGCTGATACAGTTCCTGGATGTGAAAACAGTATT CATTTACATGTCCCGGCCCCCGTTAATATTATTCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAGAGGCTCGAACAGATCCCCCCGATGGTCAGCAAGATTCATAGTGCAGCAGGAGCAAA GAAAAAACCTTAGGAAAAGAAGTTTTATTATTGATGCAAGCCCTAAACACCCTTTCAACT CCAGAAGAGAAGCTGGCAGCTCTCTGTAAGAAATATGCTGACCTTCTGGAGGAGAGCAGG AACGTTCAGAAGCAAATGAAAATTCTACAGAAGAAGCAAGCCCAGATCGTGAAAGAGAAG GTTCACTTGCAGAGTGAACACAGCAAGGCCATCTTGGCAAGAAGCAAACTCGAGTCTCTT TGCAGGGAGCTTCAGCGGCACAATAAGACGTTAAAGGAAGAAAACATGCAGCAGGCGCGA GAGGAGGAGGAAAGACGGAAGGAAGCCACGGCGCACTTCCAGATGACGCTGAATGAGATC CAGGCGCAGCTGGAGCAGCACGACCTGCACAACGCCAAGCTCCGCCAGGAGAACATGGAG CTGGGAGAGAAGCTCAAGAAGCTCATCGAGCAGTACGCGCTGCGGGAGGAGCACATTGAT AAAGTGTTCAAACATAAGGAACTTCAGCAACAGCTTGTGGACGCCAAGCTTCAGCAGACA ACGCAGCTGATCAAAGAAGCAGATGAGAAACATCAGAGAGAGAGAGAGTTTTTACTAAAA GAAGCAACGGAATCGAGACACAAATATGAACAAATGAAACAGCAAGAAGTACAACTGAAA CAGCAGCTTTCCCTTTATATGGATAAGTTTGAAGAATTCCAGACTACCATGGCAAAAAGC AACGAACTGTTTACAACCTTCCGGCAGGAAATGGAAAAGATGACGAAGAAAATCAAAAAA CTGGAAAAAGAGACAATCATATGGCGGAGCAAATGGGAAAACAACAATAAGGCTCTCCTG CAGATGGCTGAAGAGAAAACTGTCCGCGACAAAGAGTACAAGGCCTTTCAGATAAAGCTG GACCGGCTGGAGAAGCTGTGCCGAGCCCTGCAGACGGAGCGGAACGAGCTCAACGAGAAG GTGGAGGTGCTGAAGGGCCAGGTGCCTGAGTGGGGTGCGGGCGCGGGCCCAGCGCCCCCC GGGGCCCAGCCCTGCGCCGCCCTGCCTGCCCCGCAGGAGTCCCGCACCGCCTGGCCAGTG GCCCCTGGGGTCCCCCCGGAGGCCGCGTCCCCGGGCGCCGGGCCCGGCATCGAGTCCGTG GACTGAGACCCAGTGCGACCACTGTATGGAGAGCTCTATTTTGTGTATACCTTCCTCTGT TAGTAGTAACGATTGGTTTTGTGGTGACAATTTTCTTACTTTTTCTACCATATCTGTATT TTCTTAGAACTACTGGACTTATGTGGTACAGGAGGCTGCTTGGCAGTTCTGATTAGTTTC CCTCCACATCTCGCTCAGCTGCGCTGGCTGCACATCCGCCTCGTTCCCCTCCGTCGGATG CATGTGTTCACTGCCTTGTCCTCTCCCCCGCCCCTTGCGCACGACTGTCACTCACCAGGG CCGCCCCTCACAAGGGAACGTTGTTCTGCTGATACAGTTCCTGGATGTGAAAACAGTATT CATTTACATGTCCCGGCCCCCGTTAATATTATTCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1256-1374, - strand, RNAz p=0.893729 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1256-1374, - strand, RNAz p=0.893729 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 334-531, gnl|bosTau2|chrX (40490614-40490811) | |
| 334-531, gnl|canFam2|chrX (12919581-12919813) | |
| 334-531, gnl|danRer3|chr11 (7554755-7554955) | |
| 334-531, gnl|dasNov1|scaffold_24214 (15984-15752) | |
| 334-531, gnl|echTel1|scaffold_318152 (37399-37167) | |
| 334-531, gnl|fr1|chrUn (345039-345252) | |
| 334-531, gnl|galGal2|chr1 (114730032-114729801) | |
| 334-531, gnl|hg17|chrX (16607338-16607570) | |
| 334-531, gnl|Hg17|chrX (16607353-16607550) | |
| 334-531, gnl|loxAfr1|scaffold_1840 (65771-66006) | |
| 334-531, gnl|mm7|chrX (157565188-157564954) | |
| 334-531, gnl|Mm7|chrX (157565171-157564974) | |
| 334-531, gnl|monDom2|scaffold_25 (22875412-22875180) | |
| 334-531, gnl|oryCun1|scaffold_214383 (73189-72965) | |
| 334-531, gnl|panTro1|chrX (17090674-17090906) | |
| 334-531, gnl|rheMac2|chrX (14501281-14501513) | |
| 334-531, gnl|rn3|chrX (52709170-52709402) | |
| 334-531, gnl|tetNig1|chrUn_random (32897607-32897407) | |
| 334-531, gnl|xenTro1|scaffold_56 (34475-34701) | |
| 914-1481, gnl|bosTau2|chrX (40503034-40503599) | |
| 914-1481, gnl|Hg17|chrX (16619206-16619824) | |
| 914-1481, gnl|Mm7|chrX (157555782-157555206) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 334-531, gnl|bosTau2|chrX (40490614-40490811) | |
| 334-531, gnl|canFam2|chrX (12919581-12919813) | |
| 334-531, gnl|danRer3|chr11 (7554755-7554955) | |
| 334-531, gnl|dasNov1|scaffold_24214 (15984-15752) | |
| 334-531, gnl|echTel1|scaffold_318152 (37399-37167) | |
| 334-531, gnl|fr1|chrUn (345039-345252) | |
| 334-531, gnl|galGal2|chr1 (114730032-114729801) | |
| 334-531, gnl|hg17|chrX (16607338-16607570) | |
| 334-531, gnl|Hg17|chrX (16607353-16607550) | |
| 334-531, gnl|loxAfr1|scaffold_1840 (65771-66006) | |
| 334-531, gnl|mm7|chrX (157565188-157564954) | |
| 334-531, gnl|Mm7|chrX (157565171-157564974) | |
| 334-531, gnl|monDom2|scaffold_25 (22875412-22875180) | |
| 334-531, gnl|oryCun1|scaffold_214383 (73189-72965) | |
| 334-531, gnl|panTro1|chrX (17090674-17090906) | |
| 334-531, gnl|rheMac2|chrX (14501281-14501513) | |
| 334-531, gnl|rn3|chrX (52709170-52709402) | |
| 334-531, gnl|tetNig1|chrUn_random (32897607-32897407) | |
| 334-531, gnl|xenTro1|scaffold_56 (34475-34701) | |
| 914-1481, gnl|bosTau2|chrX (40503034-40503599) | |
| 914-1481, gnl|Hg17|chrX (16619206-16619824) | |
| 914-1481, gnl|Mm7|chrX (157555782-157555206) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) | |
| ecc (0.115035) |