Non-Coding RNA Search

Ss1.1-Liv1-LVR010054H11.5

Sequence:


               
               GGGCCGGCGCCGCGCCCCCGCGGCCAGCCGGGAGTCGCGTCCTCCCGGAGCCGCCTCCCC
GCGGCTTCTTCCCTTTTGTCGCGCTCCCCGCGCTCCGGGGCCACTCTCTGCCTGCATCCG
AGCCACGCGCGTTCCTCTCCTCCGCGCCACCACCGTCGAGATGCTGCGCTGCGGCCTGGC
CTGCGAGCGCTGCAGGTGGATCCTGCCCCTGCTGCTGCTCAGCGCCATTGCCTTCGACAT
TATCGCGCTGGCCGGCCGCGGCTGGCTGCAGTCAAGCGACCATGTCCAGACGTCCTCGCT
GTGGTGGAAGTGTTCTCAGGAGGGCGGCGGCAGCGGGTCCTACGAGGAAGGCTGCCAGAG
TCTCATGGATTACGCCTGGGGAAGGGCAGCCGCTGCCATGCTCTTCTGTGGCTTTATCAT
CCTGGTGATCTGTTTCATCCTCTCCTTCTTTGCCCTCTGTGGACCCCAAATGCTTGTCTT
CCTGCGAGTGATCGGAGGCCTCCTGGCCCTGGCTGCTGTGTTCCAGATCATCTCCTTGGT
CATTTACCCTGTGAAGTACACCCAGACCTTCAACCTTCATGCCAACACTGCTGTCACTTA
CATCTATAACTGGGCCTATGGCTTCGGGTGGGCGGCCACAATTATCCTGATCGGCTGTGC
CTTCTTCTTCTGTTGCCTCCCCAACTACGAAGATGACCTCCTGGGCAACGCCAAGCCCCG
GTACTTCTACACATCTGCCTAAAGTGGGAAAGGAGCAGAAGAAAATCGCTGCTGCCCAGA
TGGAGTCCAGAGAAAAAAACTGTTTTCCCCACAATACCTTGAATACCTATTTGGGGGGCA
CTGTTCATGTTATTAAACTAGAGTCAAAATGCTAAAATAATATTTCTTAAATGGTGTTAT
AGTTTCATATTCATCTTTTATATATGTTTTGTAGTGATAAACAAGACTTACTTTGAACTA
ATGACCTAGTGACTAACATGCCAGCGTTTCCTTATATCTACCCATACCATGTATAATGCA
TTTGTAAAAGAATATGAGTATGAAATGTACCATATAATTTATAAGGTAAAAATGAGAAGG
CTTCCAAAGATTTAAGTAACCCGATCAGGTTTCTGTTTTTCTCAGATGGAATGGACTGGG
TCTATTCAGGACTAAGGAGAAAAGGGCGATATTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCGGCGCCGCGCCCCCGCGGCCAGCCGGGAGTCGCGTCCTCCCGGAGCCGCCTCCCC
GCGGCTTCTTCCCTTTTGTCGCGCTCCCCGCGCTCCGGGGCCACTCTCTGCCTGCATCCG
AGCCACGCGCGTTCCTCTCCTCCGCGCCACCACCGTCGAGATGCTGCGCTGCGGCCTGGC
CTGCGAGCGCTGCAGGTGGATCCTGCCCCTGCTGCTGCTCAGCGCCATTGCCTTCGACAT
TATCGCGCTGGCCGGCCGCGGCTGGCTGCAGTCAAGCGACCATGTCCAGACGTCCTCGCT
GTGGTGGAAGTGTTCTCAGGAGGGCGGCGGCAGCGGGTCCTACGAGGAAGGCTGCCAGAG
TCTCATGGATTACGCCTGGGGAAGGGCAGCCGCTGCCATGCTCTTCTGTGGCTTTATCAT
CCTGGTGATCTGTTTCATCCTCTCCTTCTTTGCCCTCTGTGGACCCCAAATGCTTGTCTT
CCTGCGAGTGATCGGAGGCCTCCTGGCCCTGGCTGCTGTGTTCCAGATCATCTCCTTGGT
CATTTACCCTGTGAAGTACACCCAGACCTTCAACCTTCATGCCAACACTGCTGTCACTTA
CATCTATAACTGGGCCTATGGCTTCGGGTGGGCGGCCACAATTATCCTGATCGGCTGTGC
CTTCTTCTTCTGTTGCCTCCCCAACTACGAAGATGACCTCCTGGGCAACGCCAAGCCCCG
GTACTTCTACACATCTGCCTAAAGTGGGAAAGGAGCAGAAGAAAATCGCTGCTGCCCAGA
TGGAGTCCAGAGAAAAAAACTGTTTTCCCCACAATACCTTGAATACCTATTTGGGGGGCA
CTGTTCATGTTATTAAACTAGAGTCAAAATGCTAAAATAATATTTCTTAAATGGTGTTAT
AGTTTCATATTCATCTTTTATATATGTTTTGTAGTGATAAACAAGACTTACTTTGAACTA
ATGACCTAGTGACTAACATGCCAGCGTTTCCTTATATCTACCCATACCATGTATAATGCA
TTTGTAAAAGAATATGAGTATGAAATGTACCATATAATTTATAAGGTAAAAATGAGAAGG
CTTCCAAAGATTTAAGTAACCCGATCAGGTTTCTGTTTTTCTCAGATGGAATGGACTGGG
TCTATTCAGGACTAAGGAGAAAAGGGCGATATTGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55627458|ref|XP_518766.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55627458|ref|XP_518766.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               153-272, - strand, RNAz p=0.707231
               

               
               614-772, - strand, RNAz p=0.784923

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               153-272, - strand, RNAz p=0.707231
               

               
               614-772, - strand, RNAz p=0.784923

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-334, gnl|bosTau2|chr18 (45502519-45502852)
               

               
               1-334, gnl|Mm7|chr10 (18567770-18568098)
               


               
               347-976, gnl|bosTau2|chr18 (45502838-45503477)
               

               
               347-976, gnl|Hg17|chr15 (88619561-88620180)
               

               
               347-976, gnl|Mm7|chr10 (18568084-18578787)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-334, gnl|bosTau2|chr18 (45502519-45502852)
               

               
               1-334, gnl|Mm7|chr10 (18567770-18568098)
               


               
               347-976, gnl|bosTau2|chr18 (45502838-45503477)
               

               
               347-976, gnl|Hg17|chr15 (88619561-88620180)
               

               
               347-976, gnl|Mm7|chr10 (18568084-18578787)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               csk (2.53343)
               

               
               ton (1.2285)
               

               
               bla (0.994777)
               

               
               cut (0.849618)
               

               
               nep (0.7357)
               

               
               eep (0.735384)
               

               
               ski (0.733676)
               

               
               nco (0.646935)
               

               
               sme (0.610874)
               

               
               ret (0.514933)
               

               
               cmu (0.372787)
               

               
               sto (0.359648)
               

               
               pgl (0.35545)
               

               
               ill (0.351185)
               

               
               rec (0.346141)
               

               
               jej (0.296765)
               

               
               che (0.272628)
               

               
               pla (0.267344)
               

               
               ute (0.265569)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (2.53343)
               

               
               ton (1.2285)
               

               
               bla (0.994777)
               

               
               cut (0.849618)
               

               
               nep (0.7357)
               

               
               eep (0.735384)
               

               
               ski (0.733676)
               

               
               nco (0.646935)
               

               
               sme (0.610874)
               

               
               ret (0.514933)
               

               
               cmu (0.372787)
               

               
               sto (0.359648)
               

               
               pgl (0.35545)
               

               
               ill (0.351185)
               

               
               rec (0.346141)
               

               
               jej (0.296765)
               

               
               che (0.272628)
               

               
               pla (0.267344)
               

               
               ute (0.265569)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	153-272, - strand, RNAz p=0.707231
	614-772, - strand, RNAz p=0.784923

	1-334, gnl\|bosTau2\|chr18 (45502519-45502852)
	1-334, gnl\|Mm7\|chr10 (18567770-18568098)

	347-976, gnl\|bosTau2\|chr18 (45502838-45503477)
	347-976, gnl\|Hg17\|chr15 (88619561-88620180)
	347-976, gnl\|Mm7\|chr10 (18568084-18578787)

	csk (2.53343)
	ton (1.2285)
	bla (0.994777)
	cut (0.849618)
	nep (0.7357)
	eep (0.735384)
	ski (0.733676)
	nco (0.646935)
	sme (0.610874)
	ret (0.514933)
	cmu (0.372787)
	sto (0.359648)
	pgl (0.35545)
	ill (0.351185)
	rec (0.346141)
	jej (0.296765)
	che (0.272628)
	pla (0.267344)
	ute (0.265569)
	gul (0.177588)
	duo (0.172801)
	nje (0.16592)
	cki (0.165235)
	mga (0.160205)
	kid (0.129735)
	sug (0.127291)
	tra (0.123092)
	med (0.116252)
	cty (0.10408)
	eje (0.0988338)