Ss1.1-Liv1-LVR010056B12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTCCAAAGCAACGGATTATTGAATATGCAAGTTAGAAGAAAAATCACAGGACAAGCAAA TTGAGTATTTACTGGCAAATAATTGCTCTCTTAAGCCAACATCAAGAGCAGGAAAATGGA CTCATTAGGGAGGCAGGCAGTCATTACCACTCACACTGTACTTCCAGGGAGACACCGATT ATGAGAAGAGAAACTCAGCGCTGGGGAAGAAGTCACACAAAAAGAAGTGTTAAGGATTGC CCTTTGAGACACTGAAGGCTAAAGACTGCCTGAAGTTACATTTAGAGACTGAAATCACTG CACCTTAAAAACAAAAGATTGAGCTGCACTGCATTCCTAATGTTTCACCGTCACTAACTG GATATTCCTCGCAACATTGCTGTCTGGTCCTTGACCATCAGTCTGTGGCCTGCCCCTTCT GTTTATATGCAGCCTCTCTCTGTTCCCTGCCCCAATGAACATCTGCACTAGGCCCAAGTC TTGGAGTGATTTACCTGAAGAGTGACACCATTTATTTGAGAACTACTGAAGAAACCCAAG ACAGCTGAAAACCAGAAGGCATCTGAGGAGAATGAGATTACTCAGCCGGGTGGATCCAGC GCCAAGCCGGGCCTTCCCTGCCTGAACTTTGAAGCTGTTTTGTCTCCAGACCCAGCCCTC ATCCACCCAACACATTCACTGACAAACTCTCACGCTCACACCGGGTCATCTGATTGTGAC ATCAGTTGCAAGGGGATGACCGAGCGCATTCACAGCATCAACCTTCACAACTTCAGCAAT TCCGTGCTCGAGACCCTCAACGAGCAGCGCAACCGTGGCCACTTCTGTGACGTGACGGTG CGCATCCACGGGAGCATGCTGCGCGCGCACCGCTGCGTGCTGGCAGCCGGCAGCCCCTTC TTCCAGGACAAGCTGCTGCTGGGCTACAGCGACATCGAGATCCCGTCCGTGGTGTCGGTG CAGTCGGTGCAAAAGCTCATTGACTTCATGTACAGCGGAGTGCTGCGCGTCTCACAGTCC GAAGCCCTGCAGATCCTCACGGCCGCCAGCATCCTGCAGATCAAAACGGTCATCGATGAG TGCACGCGCATCGTGTCGCAGAACGTGGGCGATGTGTTCCCGGGGATCCAGGACTCGGGC CAGGACACGCCCCGGGGCACACCCGAGTCGGGCACCTCGGGCCAGAGCAGCGACACCGAG TCAGGCTACCTGCAGAGCCACCCGCAGCACAGCGTGGACAGGATCTACTCGGCGCTCTAC GCCTGCTCCATGCAGAACGGCAGCGGCGAGCGCTCCTTCTACAGCGGCGCAGTGGTCAGC CACCACGAGACTGCACTCGGCCTGCCCCGCGACCACCACATGGAAGACCCTAGCTGGATC ACGCGTATCCACGAGCGCTCGCAGCAGATGGAGCGCTACCTGTCCACCACCCCCGAAACC ACGCACTGCCGCAAGCAGCCCCGGCCCGTGCGCATCCAGACCCTGGTGGGCAACATCCAC ATCAAGCAGGAGATGGAGGACGACTACGACTACTACGGGCAGCAAAGGGTGCAGATCCTG GAGCGCAACGAGTCCGAGGAATGCACGGAAGACACCGACCAGGCTGAGGGCACCGAGAGT GAGCCCAAGGGCGAAAGCTTTGACTCAGGCGTCAGCTCCTCCATAGGCACCGAGCCCGAC TCCGTGGAGCAGCAGTTCGGGCCCGCGGCGGCGCGGGACGGTCCAGCCGAACCCGCCCAA CCTGAGCAGGCCGCGGAAGCCCCGGCTGAGGGCGCCCCGCAGCCGCACCAGCTGGAGACG GGTGCCTCTTCCCCGGAGAGAAGCAACGAAGTGGAGATGGACAACACGGTGATCACCGTC AGCAACAGCTCCGACAAGAGCGTCCTGCAGCAGCCCTCGGTCAACACGTCCATCGGGCAG CCATTGCCAAGTACCCAGCTCTATTTACGCCAGACAGAAACCCTCACCAGCAACTTGAGG ATGCCTCTGACCTTAACCAGCAACACACAGGTCATTGGCACCGCCGGCAACACCTACCTG CCGGCCCTCTTCACTACCCAGCCCGCGGGCAGCGGCCCCAAGCCTTTCCTCTTCAGCCTG CCACAGCCCCTGGCAGGCCAGCAGACCCAGTTTGTGACAGTGTCCCAGCCCGGCCTGTCA ACCTTTACTGCACAGCTGCCAGCGCCACAGCCCCTGGCTCCATCCGCCGGCCACAGCACA GCCAGTGGGCAGGGCGAAAAAAAGCCTTATGAGTGCACTCTCTGCAACAAGACTTTCACC GCCAAACAGAACTACGTCAAGCACATGTTCGTACACACAGGTGAGAAGCCCCACCAATGC AGCATCTGCTGGCGCTCCTTCTCCTTAAAGGATTACCTTATCAAGCACATGGTGACACAC ACAGGGGTGAGGGCGTACCAGTGCAGTATCTGCAACAAGCGCTTCACCCAGAAGAGCTCT CTCAACGTGCACATGCGCCTCCACCGGGGCGAGAAGTCCTACGAGTGCTACATCTGCAAA AAGAAGTTCTCCCACAAGACCCTCCTGGAGCGACACGTGGCCCTGCACAGTGCCAGCAAC GGGACCCCTCCCGCGGGCACACCCCCAGGGGCCCGCGCTGGCCCCCCAGGGGTGGTGGCC TGCACGGAGGGGACCACTTACGTCTGCTCCGTCTGTCCAGCAAAGTTTGACCAAATCGAG CAGTTCAACGACCACATGAGGATGCATGTGTCTGACGGATAAGTAGTATCTTTCTCTCTT TCTTATGAACAAAACAACAAAAAAGAAAAGAAACAAAAAAAGCTATGGCACTAGAATTTA AGAAATGTTTTGGTTTCGTTTTTACTTTCTGTTTTTGTTTTTGTTTCGTTTCATTTTGTA CTACATGAAGAACTGTTTTTTGCCTGCTGGTACATTACATTTCCGGAGGCTCGGGGGAAC ACGGGTTCTCCCAGCCTCCCTCGGATGGTGGCCTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTCCAAAGCAACGGATTATTGAATATGCAAGTTAGAAGAAAAATCACAGGACAAGCAAA TTGAGTATTTACTGGCAAATAATTGCTCTCTTAAGCCAACATCAAGAGCAGGAAAATGGA CTCATTAGGGAGGCAGGCAGTCATTACCACTCACACTGTACTTCCAGGGAGACACCGATT ATGAGAAGAGAAACTCAGCGCTGGGGAAGAAGTCACACAAAAAGAAGTGTTAAGGATTGC CCTTTGAGACACTGAAGGCTAAAGACTGCCTGAAGTTACATTTAGAGACTGAAATCACTG CACCTTAAAAACAAAAGATTGAGCTGCACTGCATTCCTAATGTTTCACCGTCACTAACTG GATATTCCTCGCAACATTGCTGTCTGGTCCTTGACCATCAGTCTGTGGCCTGCCCCTTCT GTTTATATGCAGCCTCTCTCTGTTCCCTGCCCCAATGAACATCTGCACTAGGCCCAAGTC TTGGAGTGATTTACCTGAAGAGTGACACCATTTATTTGAGAACTACTGAAGAAACCCAAG ACAGCTGAAAACCAGAAGGCATCTGAGGAGAATGAGATTACTCAGCCGGGTGGATCCAGC GCCAAGCCGGGCCTTCCCTGCCTGAACTTTGAAGCTGTTTTGTCTCCAGACCCAGCCCTC ATCCACCCAACACATTCACTGACAAACTCTCACGCTCACACCGGGTCATCTGATTGTGAC ATCAGTTGCAAGGGGATGACCGAGCGCATTCACAGCATCAACCTTCACAACTTCAGCAAT TCCGTGCTCGAGACCCTCAACGAGCAGCGCAACCGTGGCCACTTCTGTGACGTGACGGTG CGCATCCACGGGAGCATGCTGCGCGCGCACCGCTGCGTGCTGGCAGCCGGCAGCCCCTTC TTCCAGGACAAGCTGCTGCTGGGCTACAGCGACATCGAGATCCCGTCCGTGGTGTCGGTG CAGTCGGTGCAAAAGCTCATTGACTTCATGTACAGCGGAGTGCTGCGCGTCTCACAGTCC GAAGCCCTGCAGATCCTCACGGCCGCCAGCATCCTGCAGATCAAAACGGTCATCGATGAG TGCACGCGCATCGTGTCGCAGAACGTGGGCGATGTGTTCCCGGGGATCCAGGACTCGGGC CAGGACACGCCCCGGGGCACACCCGAGTCGGGCACCTCGGGCCAGAGCAGCGACACCGAG TCAGGCTACCTGCAGAGCCACCCGCAGCACAGCGTGGACAGGATCTACTCGGCGCTCTAC GCCTGCTCCATGCAGAACGGCAGCGGCGAGCGCTCCTTCTACAGCGGCGCAGTGGTCAGC CACCACGAGACTGCACTCGGCCTGCCCCGCGACCACCACATGGAAGACCCTAGCTGGATC ACGCGTATCCACGAGCGCTCGCAGCAGATGGAGCGCTACCTGTCCACCACCCCCGAAACC ACGCACTGCCGCAAGCAGCCCCGGCCCGTGCGCATCCAGACCCTGGTGGGCAACATCCAC ATCAAGCAGGAGATGGAGGACGACTACGACTACTACGGGCAGCAAAGGGTGCAGATCCTG GAGCGCAACGAGTCCGAGGAATGCACGGAAGACACCGACCAGGCTGAGGGCACCGAGAGT GAGCCCAAGGGCGAAAGCTTTGACTCAGGCGTCAGCTCCTCCATAGGCACCGAGCCCGAC TCCGTGGAGCAGCAGTTCGGGCCCGCGGCGGCGCGGGACGGTCCAGCCGAACCCGCCCAA CCTGAGCAGGCCGCGGAAGCCCCGGCTGAGGGCGCCCCGCAGCCGCACCAGCTGGAGACG GGTGCCTCTTCCCCGGAGAGAAGCAACGAAGTGGAGATGGACAACACGGTGATCACCGTC AGCAACAGCTCCGACAAGAGCGTCCTGCAGCAGCCCTCGGTCAACACGTCCATCGGGCAG CCATTGCCAAGTACCCAGCTCTATTTACGCCAGACAGAAACCCTCACCAGCAACTTGAGG ATGCCTCTGACCTTAACCAGCAACACACAGGTCATTGGCACCGCCGGCAACACCTACCTG CCGGCCCTCTTCACTACCCAGCCCGCGGGCAGCGGCCCCAAGCCTTTCCTCTTCAGCCTG CCACAGCCCCTGGCAGGCCAGCAGACCCAGTTTGTGACAGTGTCCCAGCCCGGCCTGTCA ACCTTTACTGCACAGCTGCCAGCGCCACAGCCCCTGGCTCCATCCGCCGGCCACAGCACA GCCAGTGGGCAGGGCGAAAAAAAGCCTTATGAGTGCACTCTCTGCAACAAGACTTTCACC GCCAAACAGAACTACGTCAAGCACATGTTCGTACACACAGGTGAGAAGCCCCACCAATGC AGCATCTGCTGGCGCTCCTTCTCCTTAAAGGATTACCTTATCAAGCACATGGTGACACAC ACAGGGGTGAGGGCGTACCAGTGCAGTATCTGCAACAAGCGCTTCACCCAGAAGAGCTCT CTCAACGTGCACATGCGCCTCCACCGGGGCGAGAAGTCCTACGAGTGCTACATCTGCAAA AAGAAGTTCTCCCACAAGACCCTCCTGGAGCGACACGTGGCCCTGCACAGTGCCAGCAAC GGGACCCCTCCCGCGGGCACACCCCCAGGGGCCCGCGCTGGCCCCCCAGGGGTGGTGGCC TGCACGGAGGGGACCACTTACGTCTGCTCCGTCTGTCCAGCAAAGTTTGACCAAATCGAG CAGTTCAACGACCACATGAGGATGCATGTGTCTGACGGATAAGTAGTATCTTTCTCTCTT TCTTATGAACAAAACAACAAAAAAGAAAAGAAACAAAAAAAGCTATGGCACTAGAATTTA AGAAATGTTTTGGTTTCGTTTTTACTTTCTGTTTTTGTTTTTGTTTCGTTTCATTTTGTA CTACATGAAGAACTGTTTTTTGCCTGCTGGTACATTACATTTCCGGAGGCTCGGGGGAAC ACGGGTTCTCCCAGCCTCCCTCGGATGGTGGCCTTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 97-212, gnl|bosTau2|chr1 (34931015-34930900) | |
| 97-212, gnl|canFam2|chr33 (22278496-22279034) | |
| 97-212, gnl|echTel1|scaffold_316926 (207443-206913) | |
| 97-212, gnl|galGal2|chr1 (76577085-76576542) | |
| 97-212, gnl|hg17|chr3 (116301298-116301826) | |
| 97-212, gnl|Hg17|chr3 (116301827-116301712) | |
| 97-212, gnl|loxAfr1|scaffold_4843 (56548-57094) | |
| 97-212, gnl|mm7|chr16 (42672112-42671588) | |
| 97-212, gnl|Mm7|chr16 (42671585-42671700) | |
| 97-212, gnl|monDom2|scaffold_24 (10089556-10090098) | |
| 97-212, gnl|oryCun1|scaffold_201628 (50942-50405) | |
| 97-212, gnl|panTro1|chr2 (118011489-118012019) | |
| 97-212, gnl|rheMac2|chr2 (35106969-35107502) | |
| 97-212, gnl|rn3|chr11 (59456319-59456840) | |
| 97-212, gnl|xenTro1|scaffold_324 (555878-556420) | |
| 427-528, gnl|bosTau2|chr1 (33672730-33672629) | |
| 427-528, gnl|canFam2|chr33 (21620825-21620988) | |
| 427-528, gnl|galGal2|chr1 (76996440-76996281) | |
| 427-528, gnl|hg17|chr3 (115590503-115590666) | |
| 427-528, gnl|Hg17|chr3 (115590642-115590541) | |
| 427-528, gnl|loxAfr1|scaffold_171791 (4010-4174) | |
| 427-528, gnl|mm7|chr16 (43333746-43333587) | |
| 427-528, gnl|Mm7|chr16 (43333612-43333713) | |
| 427-528, gnl|monDom2|scaffold_24 (9188776-9188939) | |
| 427-528, gnl|oryCun1|scaffold_202631 (26979-26812) | |
| 427-528, gnl|panTro1|chr2 (117296572-117296735) | |
| 427-528, gnl|rheMac2|chr2 (34394855-34395018) | |
| 427-528, gnl|rn3|chr11 (58773490-58773648) | |
| 427-528, gnl|xenTro1|scaffold_324 (156986-157127) | |
| 2242-2534, gnl|bosTau2|chr25 (25652443-25652735) | |
| 2242-2534, gnl|Hg17|chr15 (82965088-82965380) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 97-212, gnl|bosTau2|chr1 (34931015-34930900) | |
| 97-212, gnl|canFam2|chr33 (22278496-22279034) | |
| 97-212, gnl|echTel1|scaffold_316926 (207443-206913) | |
| 97-212, gnl|galGal2|chr1 (76577085-76576542) | |
| 97-212, gnl|hg17|chr3 (116301298-116301826) | |
| 97-212, gnl|Hg17|chr3 (116301827-116301712) | |
| 97-212, gnl|loxAfr1|scaffold_4843 (56548-57094) | |
| 97-212, gnl|mm7|chr16 (42672112-42671588) | |
| 97-212, gnl|Mm7|chr16 (42671585-42671700) | |
| 97-212, gnl|monDom2|scaffold_24 (10089556-10090098) | |
| 97-212, gnl|oryCun1|scaffold_201628 (50942-50405) | |
| 97-212, gnl|panTro1|chr2 (118011489-118012019) | |
| 97-212, gnl|rheMac2|chr2 (35106969-35107502) | |
| 97-212, gnl|rn3|chr11 (59456319-59456840) | |
| 97-212, gnl|xenTro1|scaffold_324 (555878-556420) | |
| 427-528, gnl|bosTau2|chr1 (33672730-33672629) | |
| 427-528, gnl|canFam2|chr33 (21620825-21620988) | |
| 427-528, gnl|galGal2|chr1 (76996440-76996281) | |
| 427-528, gnl|hg17|chr3 (115590503-115590666) | |
| 427-528, gnl|Hg17|chr3 (115590642-115590541) | |
| 427-528, gnl|loxAfr1|scaffold_171791 (4010-4174) | |
| 427-528, gnl|mm7|chr16 (43333746-43333587) | |
| 427-528, gnl|Mm7|chr16 (43333612-43333713) | |
| 427-528, gnl|monDom2|scaffold_24 (9188776-9188939) | |
| 427-528, gnl|oryCun1|scaffold_202631 (26979-26812) | |
| 427-528, gnl|panTro1|chr2 (117296572-117296735) | |
| 427-528, gnl|rheMac2|chr2 (34394855-34395018) | |
| 427-528, gnl|rn3|chr11 (58773490-58773648) | |
| 427-528, gnl|xenTro1|scaffold_324 (156986-157127) | |
| 2242-2534, gnl|bosTau2|chr25 (25652443-25652735) | |
| 2242-2534, gnl|Hg17|chr15 (82965088-82965380) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.213858) |