Non-Coding RNA Search

Ss1.1-Liv1-LVR010056E10.5

Sequence:


               
               ACTTCCGGCTCTACCCCGCCGCTGCGGCCATTGTCCGGCCCCGGCGCAGCTCGGCCCGCT
TTGGGCCGCCCCTGGCGCTTCAGGATTCCAAAGGACTGATCCTGCAGCGGGGGCGGGAGG
AGCCGGCCCGAGTCTTGGGTGGGCCTAAGGTCGCCAAATCCCAAGCTTCCAGGAGGCGGT
GATTCCGAGCGCGCGTGTCCGGGTGGCACCTCCCACGGGTTTGACTCTGTGCACAAGGCC
GCGCCCACCGTCCTGCGGGTGGGACTGGGCGTGGCCGGAGGAGGGTGTCGGGAAGGCGGC
GAGCCTTTAATTTAGGGGAGGCTGGCTTAGGCGGGGCCCGCACACCTTCCTCTCTCTCGC
ACTTGGAGAGATAGCAGAGAGGCGGAGGCTGGTCCGGCCAGGCGGGGAGTTGGATATCAA
GTCTCCAAGCCAGAAGTGATCTTCAAATTGGAGCAAGGAGAAGAGCCATGGATAGCCGAG
GGAGAAATCCAAAGACCTTTCTGTCCAGACTGGAAGACCAGGCCTGAAGCCAAATCTTCA
AATCTGCGGCAGAACATATCTGAAGTATTCCCTAGCACAGACGATCTCTCACATGCCACA
TTAGAAGATGCTTGGGATGTTAGTGGCCAGTTAGAGAGACACCAGGAAAACTGCAAGAGA
CATCTGGGGCCAGATGCATCCACCCCGAAGAAAATAATCACACCAGAAGAAACTTGTGAG
CAAAAATAAATTTAGCGAAAACTCTAGGTTTAACACAAACCTGGTTATACAACTGAACAT
TCCGCCAAGGCCTAGTGAATGTGATCCGCTTGGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTCCGGCTCTACCCCGCCGCTGCGGCCATTGTCCGGCCCCGGCGCAGCTCGGCCCGCT
TTGGGCCGCCCCTGGCGCTTCAGGATTCCAAAGGACTGATCCTGCAGCGGGGGCGGGAGG
AGCCGGCCCGAGTCTTGGGTGGGCCTAAGGTCGCCAAATCCCAAGCTTCCAGGAGGCGGT
GATTCCGAGCGCGCGTGTCCGGGTGGCACCTCCCACGGGTTTGACTCTGTGCACAAGGCC
GCGCCCACCGTCCTGCGGGTGGGACTGGGCGTGGCCGGAGGAGGGTGTCGGGAAGGCGGC
GAGCCTTTAATTTAGGGGAGGCTGGCTTAGGCGGGGCCCGCACACCTTCCTCTCTCTCGC
ACTTGGAGAGATAGCAGAGAGGCGGAGGCTGGTCCGGCCAGGCGGGGAGTTGGATATCAA
GTCTCCAAGCCAGAAGTGATCTTCAAATTGGAGCAAGGAGAAGAGCCATGGATAGCCGAG
GGAGAAATCCAAAGACCTTTCTGTCCAGACTGGAAGACCAGGCCTGAAGCCAAATCTTCA
AATCTGCGGCAGAACATATCTGAAGTATTCCCTAGCACAGACGATCTCTCACATGCCACA
TTAGAAGATGCTTGGGATGTTAGTGGCCAGTTAGAGAGACACCAGGAAAACTGCAAGAGA
CATCTGGGGCCAGATGCATCCACCCCGAAGAAAATAATCACACCAGAAGAAACTTGTGAG
CAAAAATAAATTTAGCGAAAACTCTAGGTTTAACACAAACCTGGTTATACAACTGAACAT
TCCGCCAAGGCCTAGTGAATGTGATCCGCTTGGGAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               234-413, - strand, RNAz p=0.992644
               

               
               498-616, - strand, RNAz p=0.696101

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               234-413, - strand, RNAz p=0.992644
               

               
               498-616, - strand, RNAz p=0.696101

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               346-411, + strand, RNAmicro p=0.912922

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               346-411, + strand, RNAmicro p=0.912922

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-413, gnl|bosTau2|chr18 (14473149-14472744)
               

               
               1-413, gnl|canFam2|chr5 (84018908-84018559)
               

               
               1-413, gnl|echTel1|scaffold_89023 (1413-1773)
               

               
               1-413, gnl|hg17|chr16 (67130590-67130954)
               

               
               1-413, gnl|Hg17|chr16 (67130695-67131121)
               

               
               1-413, gnl|loxAfr1|scaffold_2149 (109651-109285)
               

               
               1-413, gnl|mm7|chr8 (105014097-105014381)
               

               
               1-413, gnl|Mm7|chr8 (105014190-105014523)
               

               
               1-413, gnl|oryCun1|scaffold_215247 (22243-21866)
               

               
               1-413, gnl|panTro1|chr18 (61447161-61447525)
               

               
               1-413, gnl|rn3|chr19 (36276592-36276878)
               


               
               498-815, gnl|bosTau2|chr18 (14454515-14454200)
               

               
               498-815, gnl|Hg17|chr16 (67154438-67154759)
               

               
               498-815, gnl|Mm7|chr8 (105022758-105023070)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-413, gnl|bosTau2|chr18 (14473149-14472744)
               

               
               1-413, gnl|canFam2|chr5 (84018908-84018559)
               

               
               1-413, gnl|echTel1|scaffold_89023 (1413-1773)
               

               
               1-413, gnl|hg17|chr16 (67130590-67130954)
               

               
               1-413, gnl|Hg17|chr16 (67130695-67131121)
               

               
               1-413, gnl|loxAfr1|scaffold_2149 (109651-109285)
               

               
               1-413, gnl|mm7|chr8 (105014097-105014381)
               

               
               1-413, gnl|Mm7|chr8 (105014190-105014523)
               

               
               1-413, gnl|oryCun1|scaffold_215247 (22243-21866)
               

               
               1-413, gnl|panTro1|chr18 (61447161-61447525)
               

               
               1-413, gnl|rn3|chr19 (36276592-36276878)
               


               
               498-815, gnl|bosTau2|chr18 (14454515-14454200)
               

               
               498-815, gnl|Hg17|chr16 (67154438-67154759)
               

               
               498-815, gnl|Mm7|chr8 (105022758-105023070)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	234-413, - strand, RNAz p=0.992644
	498-616, - strand, RNAz p=0.696101

	1-413, gnl\|bosTau2\|chr18 (14473149-14472744)
	1-413, gnl\|canFam2\|chr5 (84018908-84018559)
	1-413, gnl\|echTel1\|scaffold_89023 (1413-1773)
	1-413, gnl\|hg17\|chr16 (67130590-67130954)
	1-413, gnl\|Hg17\|chr16 (67130695-67131121)
	1-413, gnl\|loxAfr1\|scaffold_2149 (109651-109285)
	1-413, gnl\|mm7\|chr8 (105014097-105014381)
	1-413, gnl\|Mm7\|chr8 (105014190-105014523)
	1-413, gnl\|oryCun1\|scaffold_215247 (22243-21866)
	1-413, gnl\|panTro1\|chr18 (61447161-61447525)
	1-413, gnl\|rn3\|chr19 (36276592-36276878)

	498-815, gnl\|bosTau2\|chr18 (14454515-14454200)
	498-815, gnl\|Hg17\|chr16 (67154438-67154759)
	498-815, gnl\|Mm7\|chr8 (105022758-105023070)